data_5I75 # _model_server_result.job_id r1wHDQq1kgOMZ83TZpSFZw _model_server_result.datetime_utc '2024-11-24 18:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":703}' # _entry.id 5I75 # _exptl.entry_id 5I75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I75 _cell.length_a 129.6 _cell.length_b 163.41 _cell.length_c 140.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 388.8 0 70.235 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 I C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O GLY 21 A GLY 94 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A O VAL 24 A VAL 97 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 A O LEU 361 A LEU 434 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 A OD1 ASP 364 A ASP 437 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc5 A OG SER 365 A SER 438 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 207 n n C1 C10 CLR sing 208 n n C1 H11 CLR sing 209 n n C1 H12 CLR sing 210 n n C2 C3 CLR sing 211 n n C2 H21 CLR sing 212 n n C2 H22 CLR sing 213 n n C3 C4 CLR sing 214 n n C3 O1 CLR sing 215 n n C3 H3 CLR sing 216 n n C4 C5 CLR sing 217 n n C4 H41 CLR sing 218 n n C4 H42 CLR sing 219 n n C5 C6 CLR doub 220 n n C5 C10 CLR sing 221 n n C6 C7 CLR sing 222 n n C6 H6 CLR sing 223 n n C7 C8 CLR sing 224 n n C7 H71 CLR sing 225 n n C7 H72 CLR sing 226 n n C8 C9 CLR sing 227 n n C8 C14 CLR sing 228 n n C8 H8 CLR sing 229 n n C9 C10 CLR sing 230 n n C9 C11 CLR sing 231 n n C9 H9 CLR sing 232 n n C10 C19 CLR sing 233 n n C11 C12 CLR sing 234 n n C11 H111 CLR sing 235 n n C11 H112 CLR sing 236 n n C12 C13 CLR sing 237 n n C12 H121 CLR sing 238 n n C12 H122 CLR sing 239 n n C13 C14 CLR sing 240 n n C13 C17 CLR sing 241 n n C13 C18 CLR sing 242 n n C14 C15 CLR sing 243 n n C14 H14 CLR sing 244 n n C15 C16 CLR sing 245 n n C15 H151 CLR sing 246 n n C15 H152 CLR sing 247 n n C16 C17 CLR sing 248 n n C16 H161 CLR sing 249 n n C16 H162 CLR sing 250 n n C17 C20 CLR sing 251 n n C17 H17 CLR sing 252 n n C18 H181 CLR sing 253 n n C18 H182 CLR sing 254 n n C18 H183 CLR sing 255 n n C19 H191 CLR sing 256 n n C19 H192 CLR sing 257 n n C19 H193 CLR sing 258 n n C20 C21 CLR sing 259 n n C20 C22 CLR sing 260 n n C20 H20 CLR sing 261 n n C21 H211 CLR sing 262 n n C21 H212 CLR sing 263 n n C21 H213 CLR sing 264 n n C22 C23 CLR sing 265 n n C22 H221 CLR sing 266 n n C22 H222 CLR sing 267 n n C23 C24 CLR sing 268 n n C23 H231 CLR sing 269 n n C23 H232 CLR sing 270 n n C24 C25 CLR sing 271 n n C24 H241 CLR sing 272 n n C24 H242 CLR sing 273 n n C25 C26 CLR sing 274 n n C25 C27 CLR sing 275 n n C25 H25 CLR sing 276 n n C26 H261 CLR sing 277 n n C26 H262 CLR sing 278 n n C26 H263 CLR sing 279 n n C27 H271 CLR sing 280 n n C27 H272 CLR sing 281 n n C27 H273 CLR sing 282 n n O1 H1 CLR sing 283 n n # _atom_sites.entry_id 5I75 _atom_sites.fract_transf_matrix[1][1] 0.007716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 68P A 1 701 700 68P 68P . E 5 NAG A 1 702 701 NAG NAG . F 6 CLR A 1 703 702 CLR CLR . G 7 C14 A 1 704 704 C14 C14 . H 8 69D A 1 705 705 69D 69D . I 5 NAG A 1 706 706 NAG NAG . J 9 NA A 1 707 803 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 167.174 159.429 16.769 1 173.26 ? C1 CLR 703 A 1 HETATM 2 C C2 CLR . . . F 6 167.639 159.077 18.174 1 182.92 ? C2 CLR 703 A 1 HETATM 3 C C3 CLR . . . F 6 167.952 160.366 18.916 1 200.9 ? C3 CLR 703 A 1 HETATM 4 C C4 CLR . . . F 6 166.715 161.246 19.001 1 180.61 ? C4 CLR 703 A 1 HETATM 5 C C5 CLR . . . F 6 166.022 161.37 17.669 1 174.31 ? C5 CLR 703 A 1 HETATM 6 C C6 CLR . . . F 6 165.55 162.56 17.29 1 180.28 ? C6 CLR 703 A 1 HETATM 7 C C7 CLR . . . F 6 165.136 162.843 15.869 1 173.27 ? C7 CLR 703 A 1 HETATM 8 C C8 CLR . . . F 6 164.41 161.632 15.336 1 164.4 ? C8 CLR 703 A 1 HETATM 9 C C9 CLR . . . F 6 165.355 160.445 15.379 1 163.83 ? C9 CLR 703 A 1 HETATM 10 C C10 CLR . . . F 6 165.84 160.145 16.807 1 168.03 ? C10 CLR 703 A 1 HETATM 11 C C11 CLR . . . F 6 164.727 159.224 14.691 1 160.06 ? C11 CLR 703 A 1 HETATM 12 C C12 CLR . . . F 6 164.073 159.529 13.336 1 156.58 ? C12 CLR 703 A 1 HETATM 13 C C13 CLR . . . F 6 163.086 160.665 13.476 1 166.37 ? C13 CLR 703 A 1 HETATM 14 C C14 CLR . . . F 6 163.905 161.847 13.929 1 168.38 ? C14 CLR 703 A 1 HETATM 15 C C15 CLR . . . F 6 163.022 163.056 13.716 1 172 ? C15 CLR 703 A 1 HETATM 16 C C16 CLR . . . F 6 162.218 162.694 12.476 1 163.17 ? C16 CLR 703 A 1 HETATM 17 C C17 CLR . . . F 6 162.404 161.205 12.222 1 162.91 ? C17 CLR 703 A 1 HETATM 18 C C18 CLR . . . F 6 162.051 160.258 14.517 1 172.12 ? C18 CLR 703 A 1 HETATM 19 C C19 CLR . . . F 6 164.86 159.253 17.54 1 172.9 ? C19 CLR 703 A 1 HETATM 20 C C20 CLR . . . F 6 161.058 160.588 11.865 1 160.06 ? C20 CLR 703 A 1 HETATM 21 C C21 CLR . . . F 6 161.22 159.132 11.467 1 154 ? C21 CLR 703 A 1 HETATM 22 C C22 CLR . . . F 6 160.347 161.377 10.774 1 164.23 ? C22 CLR 703 A 1 HETATM 23 C C23 CLR . . . F 6 159.196 162.187 11.366 1 179.07 ? C23 CLR 703 A 1 HETATM 24 C C24 CLR . . . F 6 158.982 163.513 10.637 1 179.19 ? C24 CLR 703 A 1 HETATM 25 C C25 CLR . . . F 6 157.527 163.971 10.681 1 168.99 ? C25 CLR 703 A 1 HETATM 26 C C26 CLR . . . F 6 157.43 165.491 10.639 1 163.11 ? C26 CLR 703 A 1 HETATM 27 C C27 CLR . . . F 6 156.718 163.356 9.549 1 171.75 ? C27 CLR 703 A 1 HETATM 28 O O1 CLR . . . F 6 168.383 160.05 20.241 1 199.73 ? O1 CLR 703 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 87 _model_server_stats.element_count 28 #