data_5I75 # _model_server_result.job_id u0f2hmxFPRcqjJKWpAyR_A _model_server_result.datetime_utc '2024-11-24 18:50:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 5I75 # _exptl.entry_id 5I75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.298 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(4-bromophenyl)-1-[3-(dimethylamino)propyl]-1,3-dihydro-2-benzofuran-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I75 _cell.length_a 129.6 _cell.length_b 163.41 _cell.length_c 140.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 388.8 0 70.235 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 I C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O GLY 21 A GLY 94 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A O VAL 24 A VAL 97 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 A O LEU 361 A LEU 434 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 A OD1 ASP 364 A ASP 437 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc5 A OG SER 365 A SER 438 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? # _chem_comp.formula 'C20 H21 Br N2 O' _chem_comp.formula_weight 385.298 _chem_comp.id 69D _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(4-bromophenyl)-1-[3-(dimethylamino)propyl]-1,3-dihydro-2-benzofuran-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C07 69D sing 48 n n C05 C10 69D sing 49 n n C05 O02 69D sing 50 n n C05 C06 69D sing 51 n n C07 C08 69D doub 52 n y C07 C13 69D sing 53 n y C08 C11 69D sing 54 n n C08 C14 69D sing 55 n y C10 C15 69D doub 56 n y C10 C16 69D sing 57 n y C13 C17 69D doub 58 n y C14 C18 69D doub 59 n y C15 C19 69D sing 60 n y C16 C20 69D doub 61 n y C17 C18 69D sing 62 n y C18 C24 69D sing 63 n n C19 C21 69D doub 64 n y C20 C21 69D sing 65 n y C21 BR 69D sing 66 n n C24 N04 69D trip 67 n n N03 C12 69D sing 68 n n N03 C22 69D sing 69 n n N03 C23 69D sing 70 n n C06 C09 69D sing 71 n n C09 C12 69D sing 72 n n C11 H1 69D sing 73 n n C11 H2 69D sing 74 n n C13 H4 69D sing 75 n n C14 H5 69D sing 76 n n C15 H6 69D sing 77 n n C16 H7 69D sing 78 n n C17 H8 69D sing 79 n n C19 H9 69D sing 80 n n C20 H10 69D sing 81 n n C06 H13 69D sing 82 n n C06 H14 69D sing 83 n n C09 H15 69D sing 84 n n C09 H16 69D sing 85 n n C12 H17 69D sing 86 n n C12 H18 69D sing 87 n n C22 H19 69D sing 88 n n C22 H20 69D sing 89 n n C22 H21 69D sing 90 n n C23 H22 69D sing 91 n n C23 H23 69D sing 92 n n C23 H24 69D sing 93 n n O02 C11 69D sing 94 n n # _atom_sites.entry_id 5I75 _atom_sites.fract_transf_matrix[1][1] 0.007716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 68P A 1 701 700 68P 68P . E 5 NAG A 1 702 701 NAG NAG . F 6 CLR A 1 703 702 CLR CLR . G 7 C14 A 1 704 704 C14 C14 . H 8 69D A 1 705 705 69D 69D . I 5 NAG A 1 706 706 NAG NAG . J 9 NA A 1 707 803 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C05 69D . . . H 8 172.058 176.927 1.641 1 151.93 ? C05 69D 705 A 1 HETATM 2 C C07 69D . . . H 8 171.888 178.191 1.318 1 151.84 ? C07 69D 705 A 1 HETATM 3 C C08 69D . . . H 8 171.041 179.082 1.876 1 151.5 ? C08 69D 705 A 1 HETATM 4 C C10 69D . . . H 8 171.425 175.892 0.645 1 167.28 ? C10 69D 705 A 1 HETATM 5 C C11 69D . . . H 8 170.339 178.159 2.958 1 147.96 ? C11 69D 705 A 1 HETATM 6 C C13 69D . . . H 8 172.615 178.802 0.345 1 159.54 ? C13 69D 705 A 1 HETATM 7 C C14 69D . . . H 8 171.067 180.558 1.3 1 161.54 ? C14 69D 705 A 1 HETATM 8 C C15 69D . . . H 8 172.093 175.504 -0.507 1 164.49 ? C15 69D 705 A 1 HETATM 9 C C16 69D . . . H 8 170.191 175.338 0.948 1 176.05 ? C16 69D 705 A 1 HETATM 10 C C17 69D . . . H 8 172.581 179.918 -0.036 1 167.26 ? C17 69D 705 A 1 HETATM 11 C C18 69D . . . H 8 171.933 180.793 0.312 1 170.47 ? C18 69D 705 A 1 HETATM 12 C C19 69D . . . H 8 171.514 174.576 -1.361 1 164.91 ? C19 69D 705 A 1 HETATM 13 C C20 69D . . . H 8 169.615 174.414 0.098 1 175.77 ? C20 69D 705 A 1 HETATM 14 C C21 69D . . . H 8 170.275 174.033 -1.056 1 175.38 ? C21 69D 705 A 1 HETATM 15 C C24 69D . . . H 8 172.026 182.184 -0.306 1 193.12 ? C24 69D 705 A 1 HETATM 16 BR BR 69D . . . H 8 169.446 172.733 -2.229 1 195.79 ? BR 69D 705 A 1 HETATM 17 O O02 69D . . . H 8 171.357 176.807 2.972 1 147.91 ? O02 69D 705 A 1 HETATM 18 N N04 69D . . . H 8 172.075 183.224 -0.75 1 198.51 ? N04 69D 705 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #