data_5I7R # _model_server_result.job_id xpZgSvL2Bu_U656sLZaEjA _model_server_result.datetime_utc '2024-12-21 14:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 5I7R # _exptl.entry_id 5I7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.353 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-{[([1,1'-biphenyl]-3-yl)carbamoyl]amino}benzoic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I7R _cell.length_a 72.17 _cell.length_b 86.487 _cell.length_c 101.584 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 54 B LYS 51 1_555 C C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale2 B NZ LYS 54 A LYS 51 1_555 H C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? # _chem_comp.formula 'C20 H16 N2 O3' _chem_comp.formula_weight 332.353 _chem_comp.id 68W _chem_comp.mon_nstd_flag . _chem_comp.name "3-{[([1,1'-biphenyl]-3-yl)carbamoyl]amino}benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAI 68W doub 1 n y CAG CAK 68W sing 2 n y OAB CAT 68W doub 3 n n CAH CAJ 68W doub 4 n y CAH CAN 68W sing 5 n y CAI CAU 68W sing 6 n y CAJ CAV 68W sing 7 n y CAK CAW 68W doub 8 n y CAN CAY 68W doub 9 n y CAT NAQ 68W sing 10 n n CAT NAR 68W sing 11 n n CAU NAQ 68W sing 12 n n CAU CAO 68W doub 13 n y CAW CAO 68W sing 14 n y CAW CAS 68W sing 15 n n CAV NAR 68W sing 16 n n CAV CAP 68W doub 17 n y OAA CAS 68W doub 18 n n CAS OAC 68W sing 19 n n CAY CAP 68W sing 20 n y CAY CAX 68W sing 21 n n CAM CAX 68W doub 22 n y CAM CAF 68W sing 23 n y CAX CAL 68W sing 24 n y CAF CAD 68W doub 25 n y CAL CAE 68W doub 26 n y CAD CAE 68W sing 27 n y OAC H1 68W sing 28 n n CAO H2 68W sing 29 n n CAK H3 68W sing 30 n n CAG H4 68W sing 31 n n CAI H5 68W sing 32 n n NAQ H6 68W sing 33 n n NAR H7 68W sing 34 n n CAP H8 68W sing 35 n n CAJ H9 68W sing 36 n n CAH H10 68W sing 37 n n CAN H11 68W sing 38 n n CAL H12 68W sing 39 n n CAE H13 68W sing 40 n n CAD H14 68W sing 41 n n CAF H15 68W sing 42 n n CAM H16 68W sing 43 n n # _atom_sites.entry_id 5I7R _atom_sites.fract_transf_matrix[1][1] 0.013856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP B 1 401 51 PLP LLP . D 3 68W B 1 402 2 68W 51G . E 4 ACT B 1 403 2 ACT ACT . F 4 ACT B 1 404 3 ACT ACT . G 4 ACT B 1 405 6 ACT ACT . H 2 PLP A 1 401 51 PLP LLP . I 3 68W A 1 402 1 68W 51G . J 4 ACT A 1 403 1 ACT ACT . K 4 ACT A 1 404 4 ACT ACT . L 5 HOH B 1 501 327 HOH HOH . L 5 HOH B 2 502 72 HOH HOH . L 5 HOH B 3 503 214 HOH HOH . L 5 HOH B 4 504 324 HOH HOH . L 5 HOH B 5 505 200 HOH HOH . L 5 HOH B 6 506 154 HOH HOH . L 5 HOH B 7 507 51 HOH HOH . L 5 HOH B 8 508 337 HOH HOH . L 5 HOH B 9 509 109 HOH HOH . L 5 HOH B 10 510 10 HOH HOH . L 5 HOH B 11 511 46 HOH HOH . L 5 HOH B 12 512 33 HOH HOH . L 5 HOH B 13 513 122 HOH HOH . L 5 HOH B 14 514 39 HOH HOH . L 5 HOH B 15 515 301 HOH HOH . L 5 HOH B 16 516 65 HOH HOH . L 5 HOH B 17 517 18 HOH HOH . L 5 HOH B 18 518 146 HOH HOH . L 5 HOH B 19 519 107 HOH HOH . L 5 HOH B 20 520 79 HOH HOH . L 5 HOH B 21 521 294 HOH HOH . L 5 HOH B 22 522 345 HOH HOH . L 5 HOH B 23 523 7 HOH HOH . L 5 HOH B 24 524 116 HOH HOH . L 5 HOH B 25 525 68 HOH HOH . L 5 HOH B 26 526 115 HOH HOH . L 5 HOH B 27 527 110 HOH HOH . L 5 HOH B 28 528 349 HOH HOH . L 5 HOH B 29 529 80 HOH HOH . L 5 HOH B 30 530 35 HOH HOH . L 5 HOH B 31 531 169 HOH HOH . L 5 HOH B 32 532 78 HOH HOH . L 5 HOH B 33 533 158 HOH HOH . L 5 HOH B 34 534 213 HOH HOH . L 5 HOH B 35 535 212 HOH HOH . L 5 HOH B 36 536 36 HOH HOH . L 5 HOH B 37 537 16 HOH HOH . L 5 HOH B 38 538 276 HOH HOH . L 5 HOH B 39 539 136 HOH HOH . L 5 HOH B 40 540 149 HOH HOH . L 5 HOH B 41 541 60 HOH HOH . L 5 HOH B 42 542 28 HOH HOH . L 5 HOH B 43 543 50 HOH HOH . L 5 HOH B 44 544 339 HOH HOH . L 5 HOH B 45 545 66 HOH HOH . L 5 HOH B 46 546 334 HOH HOH . L 5 HOH B 47 547 266 HOH HOH . L 5 HOH B 48 548 3 HOH HOH . L 5 HOH B 49 549 218 HOH HOH . L 5 HOH B 50 550 40 HOH HOH . L 5 HOH B 51 551 330 HOH HOH . L 5 HOH B 52 552 94 HOH HOH . L 5 HOH B 53 553 24 HOH HOH . L 5 HOH B 54 554 83 HOH HOH . L 5 HOH B 55 555 167 HOH HOH . L 5 HOH B 56 556 342 HOH HOH . L 5 HOH B 57 557 189 HOH HOH . L 5 HOH B 58 558 341 HOH HOH . L 5 HOH B 59 559 117 HOH HOH . L 5 HOH B 60 560 67 HOH HOH . L 5 HOH B 61 561 295 HOH HOH . L 5 HOH B 62 562 156 HOH HOH . L 5 HOH B 63 563 230 HOH HOH . L 5 HOH B 64 564 61 HOH HOH . L 5 HOH B 65 565 21 HOH HOH . L 5 HOH B 66 566 205 HOH HOH . L 5 HOH B 67 567 331 HOH HOH . L 5 HOH B 68 568 292 HOH HOH . L 5 HOH B 69 569 100 HOH HOH . L 5 HOH B 70 570 101 HOH HOH . L 5 HOH B 71 571 93 HOH HOH . L 5 HOH B 72 572 112 HOH HOH . L 5 HOH B 73 573 92 HOH HOH . L 5 HOH B 74 574 219 HOH HOH . L 5 HOH B 75 575 283 HOH HOH . L 5 HOH B 76 576 138 HOH HOH . L 5 HOH B 77 577 47 HOH HOH . L 5 HOH B 78 578 270 HOH HOH . L 5 HOH B 79 579 20 HOH HOH . L 5 HOH B 80 580 303 HOH HOH . L 5 HOH B 81 581 87 HOH HOH . L 5 HOH B 82 582 131 HOH HOH . L 5 HOH B 83 583 231 HOH HOH . L 5 HOH B 84 584 106 HOH HOH . L 5 HOH B 85 585 174 HOH HOH . L 5 HOH B 86 586 188 HOH HOH . L 5 HOH B 87 587 226 HOH HOH . L 5 HOH B 88 588 151 HOH HOH . L 5 HOH B 89 589 233 HOH HOH . L 5 HOH B 90 590 157 HOH HOH . L 5 HOH B 91 591 267 HOH HOH . L 5 HOH B 92 592 287 HOH HOH . L 5 HOH B 93 593 187 HOH HOH . L 5 HOH B 94 594 348 HOH HOH . L 5 HOH B 95 595 132 HOH HOH . L 5 HOH B 96 596 95 HOH HOH . L 5 HOH B 97 597 186 HOH HOH . L 5 HOH B 98 598 171 HOH HOH . L 5 HOH B 99 599 176 HOH HOH . L 5 HOH B 100 600 329 HOH HOH . L 5 HOH B 101 601 175 HOH HOH . L 5 HOH B 102 602 111 HOH HOH . L 5 HOH B 103 603 282 HOH HOH . L 5 HOH B 104 604 344 HOH HOH . L 5 HOH B 105 605 346 HOH HOH . L 5 HOH B 106 606 265 HOH HOH . L 5 HOH B 107 607 208 HOH HOH . L 5 HOH B 108 608 178 HOH HOH . L 5 HOH B 109 609 300 HOH HOH . M 5 HOH A 1 501 277 HOH HOH . M 5 HOH A 2 502 62 HOH HOH . M 5 HOH A 3 503 76 HOH HOH . M 5 HOH A 4 504 140 HOH HOH . M 5 HOH A 5 505 161 HOH HOH . M 5 HOH A 6 506 166 HOH HOH . M 5 HOH A 7 507 84 HOH HOH . M 5 HOH A 8 508 54 HOH HOH . M 5 HOH A 9 509 273 HOH HOH . M 5 HOH A 10 510 81 HOH HOH . M 5 HOH A 11 511 147 HOH HOH . M 5 HOH A 12 512 43 HOH HOH . M 5 HOH A 13 513 69 HOH HOH . M 5 HOH A 14 514 57 HOH HOH . M 5 HOH A 15 515 25 HOH HOH . M 5 HOH A 16 516 27 HOH HOH . M 5 HOH A 17 517 12 HOH HOH . M 5 HOH A 18 518 203 HOH HOH . M 5 HOH A 19 519 29 HOH HOH . M 5 HOH A 20 520 141 HOH HOH . M 5 HOH A 21 521 113 HOH HOH . M 5 HOH A 22 522 91 HOH HOH . M 5 HOH A 23 523 34 HOH HOH . M 5 HOH A 24 524 286 HOH HOH . M 5 HOH A 25 525 235 HOH HOH . M 5 HOH A 26 526 44 HOH HOH . M 5 HOH A 27 527 216 HOH HOH . M 5 HOH A 28 528 335 HOH HOH . M 5 HOH A 29 529 227 HOH HOH . M 5 HOH A 30 530 4 HOH HOH . M 5 HOH A 31 531 121 HOH HOH . M 5 HOH A 32 532 45 HOH HOH . M 5 HOH A 33 533 168 HOH HOH . M 5 HOH A 34 534 49 HOH HOH . M 5 HOH A 35 535 64 HOH HOH . M 5 HOH A 36 536 119 HOH HOH . M 5 HOH A 37 537 114 HOH HOH . M 5 HOH A 38 538 99 HOH HOH . M 5 HOH A 39 539 336 HOH HOH . M 5 HOH A 40 540 23 HOH HOH . M 5 HOH A 41 541 197 HOH HOH . M 5 HOH A 42 542 48 HOH HOH . M 5 HOH A 43 543 211 HOH HOH . M 5 HOH A 44 544 172 HOH HOH . M 5 HOH A 45 545 120 HOH HOH . M 5 HOH A 46 546 285 HOH HOH . M 5 HOH A 47 547 262 HOH HOH . M 5 HOH A 48 548 75 HOH HOH . M 5 HOH A 49 549 343 HOH HOH . M 5 HOH A 50 550 260 HOH HOH . M 5 HOH A 51 551 284 HOH HOH . M 5 HOH A 52 552 332 HOH HOH . M 5 HOH A 53 553 340 HOH HOH . M 5 HOH A 54 554 278 HOH HOH . M 5 HOH A 55 555 143 HOH HOH . M 5 HOH A 56 556 26 HOH HOH . M 5 HOH A 57 557 31 HOH HOH . M 5 HOH A 58 558 159 HOH HOH . M 5 HOH A 59 559 37 HOH HOH . M 5 HOH A 60 560 333 HOH HOH . M 5 HOH A 61 561 19 HOH HOH . M 5 HOH A 62 562 196 HOH HOH . M 5 HOH A 63 563 297 HOH HOH . M 5 HOH A 64 564 153 HOH HOH . M 5 HOH A 65 565 130 HOH HOH . M 5 HOH A 66 566 42 HOH HOH . M 5 HOH A 67 567 179 HOH HOH . M 5 HOH A 68 568 118 HOH HOH . M 5 HOH A 69 569 70 HOH HOH . M 5 HOH A 70 570 77 HOH HOH . M 5 HOH A 71 571 139 HOH HOH . M 5 HOH A 72 572 90 HOH HOH . M 5 HOH A 73 573 302 HOH HOH . M 5 HOH A 74 574 328 HOH HOH . M 5 HOH A 75 575 269 HOH HOH . M 5 HOH A 76 576 108 HOH HOH . M 5 HOH A 77 577 103 HOH HOH . M 5 HOH A 78 578 160 HOH HOH . M 5 HOH A 79 579 261 HOH HOH . M 5 HOH A 80 580 293 HOH HOH . M 5 HOH A 81 581 124 HOH HOH . M 5 HOH A 82 582 350 HOH HOH . M 5 HOH A 83 583 298 HOH HOH . M 5 HOH A 84 584 304 HOH HOH . M 5 HOH A 85 585 299 HOH HOH . M 5 HOH A 86 586 180 HOH HOH . M 5 HOH A 87 587 182 HOH HOH . M 5 HOH A 88 588 338 HOH HOH . M 5 HOH A 89 589 272 HOH HOH . M 5 HOH A 90 590 252 HOH HOH . M 5 HOH A 91 591 290 HOH HOH . M 5 HOH A 92 592 210 HOH HOH . M 5 HOH A 93 593 289 HOH HOH . M 5 HOH A 94 594 296 HOH HOH . M 5 HOH A 95 595 97 HOH HOH . M 5 HOH A 96 596 183 HOH HOH . M 5 HOH A 97 597 288 HOH HOH . M 5 HOH A 98 598 236 HOH HOH . M 5 HOH A 99 599 347 HOH HOH . M 5 HOH A 100 600 275 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 68W . . . I 3 6.898 -2.338 6.735 1 22.3 ? OAA 68W 402 A 1 HETATM 2 C CAS 68W . . . I 3 6.408 -1.175 6.787 1 24.68 ? CAS 68W 402 A 1 HETATM 3 O OAC 68W . . . I 3 5.387 -1.026 7.487 1 25.72 ? OAC 68W 402 A 1 HETATM 4 C CAW 68W . . . I 3 7.023 -0.113 6.081 1 22.63 ? CAW 68W 402 A 1 HETATM 5 C CAO 68W . . . I 3 6.873 1.211 6.461 1 23.37 ? CAO 68W 402 A 1 HETATM 6 C CAK 68W . . . I 3 7.906 -0.401 5.031 1 24.1 ? CAK 68W 402 A 1 HETATM 7 C CAG 68W . . . I 3 8.573 0.647 4.349 1 24.3 ? CAG 68W 402 A 1 HETATM 8 C CAI 68W . . . I 3 8.402 1.965 4.732 1 25.02 ? CAI 68W 402 A 1 HETATM 9 C CAU 68W . . . I 3 7.501 2.292 5.775 1 24.79 ? CAU 68W 402 A 1 HETATM 10 N NAQ 68W . . . I 3 7.341 3.539 6.307 1 23.51 ? NAQ 68W 402 A 1 HETATM 11 C CAT 68W . . . I 3 7.749 4.723 5.74 1 23.97 ? CAT 68W 402 A 1 HETATM 12 O OAB 68W . . . I 3 8.105 4.814 4.568 1 24.12 ? OAB 68W 402 A 1 HETATM 13 N NAR 68W . . . I 3 7.542 5.802 6.526 1 23.09 ? NAR 68W 402 A 1 HETATM 14 C CAV 68W . . . I 3 7.813 7.108 6.175 1 22.76 ? CAV 68W 402 A 1 HETATM 15 C CAP 68W . . . I 3 8.282 7.977 7.17 1 23.71 ? CAP 68W 402 A 1 HETATM 16 C CAJ 68W . . . I 3 7.583 7.637 4.894 1 22.68 ? CAJ 68W 402 A 1 HETATM 17 C CAH 68W . . . I 3 7.845 8.984 4.636 1 22.17 ? CAH 68W 402 A 1 HETATM 18 C CAN 68W . . . I 3 8.294 9.847 5.635 1 23.94 ? CAN 68W 402 A 1 HETATM 19 C CAY 68W . . . I 3 8.55 9.339 6.922 1 24.79 ? CAY 68W 402 A 1 HETATM 20 C CAX 68W . . . I 3 9.061 10.185 7.934 1 29.13 ? CAX 68W 402 A 1 HETATM 21 C CAL 68W . . . I 3 8.827 9.913 9.278 1 29.87 ? CAL 68W 402 A 1 HETATM 22 C CAE 68W . . . I 3 9.291 10.739 10.298 1 31.54 ? CAE 68W 402 A 1 HETATM 23 C CAD 68W . . . I 3 10.064 11.829 9.981 1 29.63 ? CAD 68W 402 A 1 HETATM 24 C CAF 68W . . . I 3 10.367 12.108 8.651 1 27.8 ? CAF 68W 402 A 1 HETATM 25 C CAM 68W . . . I 3 9.854 11.283 7.628 1 29.02 ? CAM 68W 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #