data_5I7V # _model_server_result.job_id YRbnDdrmitlS3Pjtu0BKNw _model_server_result.datetime_utc '2024-12-03 11:18:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5I7V # _exptl.entry_id 5I7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I7V _cell.length_a 69.62 _cell.length_b 111.95 _cell.length_c 262.75 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,J,K 1 1,2 C,H,I,L 2 1,3,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -69.62 111.95 0 3 'crystal symmetry operation' 2_365 -x-2,-y+1,z -1 0 0 0 -1 0 0 0 1 -139.24 111.95 0 4 'crystal symmetry operation' 3_355 -x-2,y,-z -1 0 0 0 1 0 0 0 -1 -139.24 0 0 5 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 111.95 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 5I7V _atom_sites.fract_transf_matrix[1][1] 0.014364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAD A 1 301 1 NAD NAD . E 3 PV4 A 1 302 1 PV4 3PP . F 2 NAD B 1 301 1 NAD NAD . G 3 PV4 B 1 302 1 PV4 3PP . H 2 NAD C 1 301 1 NAD NAD . I 3 PV4 C 1 302 1 PV4 3PP . J 4 HOH A 1 401 47 HOH HOH . J 4 HOH A 2 402 87 HOH HOH . J 4 HOH A 3 403 83 HOH HOH . J 4 HOH A 4 404 70 HOH HOH . J 4 HOH A 5 405 30 HOH HOH . J 4 HOH A 6 406 58 HOH HOH . J 4 HOH A 7 407 98 HOH HOH . J 4 HOH A 8 408 107 HOH HOH . J 4 HOH A 9 409 36 HOH HOH . J 4 HOH A 10 410 21 HOH HOH . J 4 HOH A 11 411 46 HOH HOH . J 4 HOH A 12 412 29 HOH HOH . J 4 HOH A 13 413 4 HOH HOH . J 4 HOH A 14 414 1 HOH HOH . J 4 HOH A 15 415 94 HOH HOH . J 4 HOH A 16 416 32 HOH HOH . J 4 HOH A 17 417 38 HOH HOH . J 4 HOH A 18 418 60 HOH HOH . J 4 HOH A 19 419 37 HOH HOH . J 4 HOH A 20 420 63 HOH HOH . J 4 HOH A 21 421 111 HOH HOH . J 4 HOH A 22 422 2 HOH HOH . J 4 HOH A 23 423 5 HOH HOH . J 4 HOH A 24 424 9 HOH HOH . J 4 HOH A 25 425 12 HOH HOH . J 4 HOH A 26 426 93 HOH HOH . J 4 HOH A 27 427 52 HOH HOH . J 4 HOH A 28 428 41 HOH HOH . J 4 HOH A 29 429 3 HOH HOH . J 4 HOH A 30 430 48 HOH HOH . J 4 HOH A 31 431 18 HOH HOH . J 4 HOH A 32 432 13 HOH HOH . J 4 HOH A 33 433 40 HOH HOH . J 4 HOH A 34 434 54 HOH HOH . J 4 HOH A 35 435 81 HOH HOH . J 4 HOH A 36 436 118 HOH HOH . J 4 HOH A 37 437 82 HOH HOH . J 4 HOH A 38 438 76 HOH HOH . J 4 HOH A 39 439 101 HOH HOH . J 4 HOH A 40 440 85 HOH HOH . J 4 HOH A 41 441 57 HOH HOH . J 4 HOH A 42 442 77 HOH HOH . J 4 HOH A 43 443 106 HOH HOH . J 4 HOH A 44 444 75 HOH HOH . J 4 HOH A 45 445 113 HOH HOH . K 4 HOH B 1 401 59 HOH HOH . K 4 HOH B 2 402 31 HOH HOH . K 4 HOH B 3 403 27 HOH HOH . K 4 HOH B 4 404 42 HOH HOH . K 4 HOH B 5 405 11 HOH HOH . K 4 HOH B 6 406 65 HOH HOH . K 4 HOH B 7 407 56 HOH HOH . K 4 HOH B 8 408 74 HOH HOH . K 4 HOH B 9 409 26 HOH HOH . K 4 HOH B 10 410 86 HOH HOH . K 4 HOH B 11 411 22 HOH HOH . K 4 HOH B 12 412 115 HOH HOH . K 4 HOH B 13 413 28 HOH HOH . K 4 HOH B 14 414 103 HOH HOH . K 4 HOH B 15 415 72 HOH HOH . K 4 HOH B 16 416 69 HOH HOH . K 4 HOH B 17 417 25 HOH HOH . K 4 HOH B 18 418 114 HOH HOH . K 4 HOH B 19 419 80 HOH HOH . K 4 HOH B 20 420 24 HOH HOH . K 4 HOH B 21 421 44 HOH HOH . K 4 HOH B 22 422 67 HOH HOH . K 4 HOH B 23 423 8 HOH HOH . K 4 HOH B 24 424 116 HOH HOH . K 4 HOH B 25 425 64 HOH HOH . K 4 HOH B 26 426 104 HOH HOH . K 4 HOH B 27 427 105 HOH HOH . K 4 HOH B 28 428 17 HOH HOH . K 4 HOH B 29 429 88 HOH HOH . K 4 HOH B 30 430 117 HOH HOH . K 4 HOH B 31 431 61 HOH HOH . K 4 HOH B 32 432 102 HOH HOH . K 4 HOH B 33 433 110 HOH HOH . K 4 HOH B 34 434 51 HOH HOH . L 4 HOH C 1 401 16 HOH HOH . L 4 HOH C 2 402 34 HOH HOH . L 4 HOH C 3 403 33 HOH HOH . L 4 HOH C 4 404 84 HOH HOH . L 4 HOH C 5 405 19 HOH HOH . L 4 HOH C 6 406 20 HOH HOH . L 4 HOH C 7 407 14 HOH HOH . L 4 HOH C 8 408 108 HOH HOH . L 4 HOH C 9 409 99 HOH HOH . L 4 HOH C 10 410 43 HOH HOH . L 4 HOH C 11 411 109 HOH HOH . L 4 HOH C 12 412 62 HOH HOH . L 4 HOH C 13 413 96 HOH HOH . L 4 HOH C 14 414 35 HOH HOH . L 4 HOH C 15 415 90 HOH HOH . L 4 HOH C 16 416 6 HOH HOH . L 4 HOH C 17 417 50 HOH HOH . L 4 HOH C 18 418 10 HOH HOH . L 4 HOH C 19 419 15 HOH HOH . L 4 HOH C 20 420 53 HOH HOH . L 4 HOH C 21 421 100 HOH HOH . L 4 HOH C 22 422 112 HOH HOH . L 4 HOH C 23 423 79 HOH HOH . L 4 HOH C 24 424 49 HOH HOH . L 4 HOH C 25 425 45 HOH HOH . L 4 HOH C 26 426 71 HOH HOH . L 4 HOH C 27 427 23 HOH HOH . L 4 HOH C 28 428 66 HOH HOH . L 4 HOH C 29 429 78 HOH HOH . L 4 HOH C 30 430 55 HOH HOH . L 4 HOH C 31 431 7 HOH HOH . L 4 HOH C 32 432 68 HOH HOH . L 4 HOH C 33 433 73 HOH HOH . L 4 HOH C 34 434 95 HOH HOH . L 4 HOH C 35 435 89 HOH HOH . L 4 HOH C 36 436 91 HOH HOH . L 4 HOH C 37 437 39 HOH HOH . L 4 HOH C 38 438 92 HOH HOH . L 4 HOH C 39 439 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 2 -46.947 39.312 71.005 1 161.66 ? PA NAD 301 B 1 HETATM 2 O O1A NAD . . . F 2 -47.388 40.099 72.238 1 88.24 ? O1A NAD 301 B 1 HETATM 3 O O2A NAD . . . F 2 -48.059 38.322 70.534 1 67.45 ? O2A NAD 301 B 1 HETATM 4 O O5B NAD . . . F 2 -45.555 38.617 71.435 1 126.17 ? O5B NAD 301 B 1 HETATM 5 C C5B NAD . . . F 2 -44.374 39.424 71.665 1 103.61 ? C5B NAD 301 B 1 HETATM 6 C C4B NAD . . . F 2 -43.654 39.071 72.84 1 118.07 ? C4B NAD 301 B 1 HETATM 7 O O4B NAD . . . F 2 -42.706 40.067 73.354 1 101.04 ? O4B NAD 301 B 1 HETATM 8 C C3B NAD . . . F 2 -44.7 38.93 73.869 1 152.03 ? C3B NAD 301 B 1 HETATM 9 O O3B NAD . . . F 2 -44.597 37.672 74.464 1 176.97 ? O3B NAD 301 B 1 HETATM 10 C C2B NAD . . . F 2 -44.387 39.965 74.827 1 141 ? C2B NAD 301 B 1 HETATM 11 O O2B NAD . . . F 2 -44.815 39.638 76.103 1 148.17 ? O2B NAD 301 B 1 HETATM 12 C C1B NAD . . . F 2 -42.917 39.886 74.721 1 142.93 ? C1B NAD 301 B 1 HETATM 13 N N9A NAD . . . F 2 -42.212 40.702 75.72 1 158.05 ? N9A NAD 301 B 1 HETATM 14 C C8A NAD . . . F 2 -42.729 41.765 76.369 1 139.8 ? C8A NAD 301 B 1 HETATM 15 N N7A NAD . . . F 2 -41.82 42.209 77.255 1 145.65 ? N7A NAD 301 B 1 HETATM 16 C C5A NAD . . . F 2 -40.705 41.428 77.199 1 152.32 ? C5A NAD 301 B 1 HETATM 17 C C6A NAD . . . F 2 -39.453 41.403 77.866 1 118.3 ? C6A NAD 301 B 1 HETATM 18 N N6A NAD . . . F 2 -39.14 42.383 78.882 1 26.55 ? N6A NAD 301 B 1 HETATM 19 N N1A NAD . . . F 2 -38.533 40.459 77.56 1 39.63 ? N1A NAD 301 B 1 HETATM 20 C C2A NAD . . . F 2 -38.843 39.542 76.615 1 115.57 ? C2A NAD 301 B 1 HETATM 21 N N3A NAD . . . F 2 -40.016 39.532 75.952 1 114.08 ? N3A NAD 301 B 1 HETATM 22 C C4A NAD . . . F 2 -40.968 40.459 76.222 1 143.35 ? C4A NAD 301 B 1 HETATM 23 O O3 NAD . . . F 2 -46.523 40.314 69.875 1 218.79 ? O3 NAD 301 B 1 HETATM 24 P PN NAD . . . F 2 -46.061 39.797 68.552 1 187.4 ? PN NAD 301 B 1 HETATM 25 O O1N NAD . . . F 2 -47.118 40.185 67.612 1 32.86 ? O1N NAD 301 B 1 HETATM 26 O O2N NAD . . . F 2 -45.879 38.303 68.574 1 172.29 ? O2N NAD 301 B 1 HETATM 27 O O5D NAD . . . F 2 -44.756 40.537 68.087 1 37.58 ? O5D NAD 301 B 1 HETATM 28 C C5D NAD . . . F 2 -43.547 40.535 68.831 1 36.49 ? C5D NAD 301 B 1 HETATM 29 C C4D NAD . . . F 2 -42.389 41.223 68.323 1 112.82 ? C4D NAD 301 B 1 HETATM 30 O O4D NAD . . . F 2 -42.483 41.388 66.944 1 148.8 ? O4D NAD 301 B 1 HETATM 31 C C3D NAD . . . F 2 -42.265 42.607 68.878 1 136.1 ? C3D NAD 301 B 1 HETATM 32 O O3D NAD . . . F 2 -40.98 43.013 68.831 1 82.46 ? O3D NAD 301 B 1 HETATM 33 C C2D NAD . . . F 2 -43.007 43.47 67.979 1 113.49 ? C2D NAD 301 B 1 HETATM 34 O O2D NAD . . . F 2 -42.467 44.71 67.993 1 91.73 ? O2D NAD 301 B 1 HETATM 35 C C1D NAD . . . F 2 -42.801 42.809 66.67 1 73.58 ? C1D NAD 301 B 1 HETATM 36 N N1N NAD . . . F 2 -43.842 43.057 65.635 1 51.23 ? N1N NAD 301 B 1 HETATM 37 C C2N NAD . . . F 2 -45.239 42.856 65.461 1 35.2 ? C2N NAD 301 B 1 HETATM 38 C C3N NAD . . . F 2 -45.808 43.26 64.232 1 24.08 ? C3N NAD 301 B 1 HETATM 39 C C7N NAD . . . F 2 -47.298 43.115 63.841 1 67.63 ? C7N NAD 301 B 1 HETATM 40 O O7N NAD . . . F 2 -47.66 43.502 62.722 1 25.26 ? O7N NAD 301 B 1 HETATM 41 N N7N NAD . . . F 2 -48.069 42.186 64.399 1 13.45 ? N7N NAD 301 B 1 HETATM 42 C C4N NAD . . . F 2 -45.007 43.85 63.249 1 39.03 ? C4N NAD 301 B 1 HETATM 43 C C5N NAD . . . F 2 -43.634 44.016 63.474 1 105.67 ? C5N NAD 301 B 1 HETATM 44 C C6N NAD . . . F 2 -43.02 43.641 64.663 1 11.93 ? C6N NAD 301 B 1 # _model_server_stats.io_time_ms 143 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 44 #