data_5I80 # _model_server_result.job_id Et6FpXskt2rqPyeeLet5TQ _model_server_result.datetime_utc '2024-10-19 00:54:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5I80 # _exptl.entry_id 5I80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.336 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-dimethyl-3-(6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I80 _cell.length_a 43.693 _cell.length_b 48.67 _cell.length_c 59.933 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H17 N3 O2' _chem_comp.formula_weight 295.336 _chem_comp.id 67B _chem_comp.mon_nstd_flag . _chem_comp.name N,N-dimethyl-3-(6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N2 67B sing 1 n y C16 C15 67B doub 2 n y N2 C13 67B sing 3 n y C15 C14 67B sing 4 n y C13 C14 67B doub 5 n y C13 C12 67B sing 6 n n C14 C9 67B sing 7 n n O1 C12 67B doub 8 n n C12 N1 67B sing 9 n n C6 C5 67B doub 10 n y C6 C7 67B sing 11 n y C5 C4 67B sing 12 n y C9 C7 67B sing 13 n n C9 C10 67B doub 14 n n C7 C8 67B doub 15 n y N1 C10 67B sing 16 n n N1 C11 67B sing 17 n n C4 C3 67B doub 18 n y C8 C3 67B sing 19 n y C3 C2 67B sing 20 n n C2 O 67B doub 21 n n C2 N 67B sing 22 n n C1 N 67B sing 23 n n N C 67B sing 24 n n C4 H1 67B sing 25 n n C1 H2 67B sing 26 n n C1 H3 67B sing 27 n n C1 H4 67B sing 28 n n C5 H5 67B sing 29 n n C8 H6 67B sing 30 n n C6 H7 67B sing 31 n n C10 H8 67B sing 32 n n C11 H9 67B sing 33 n n C11 H10 67B sing 34 n n C11 H11 67B sing 35 n n N2 H12 67B sing 36 n n C16 H13 67B sing 37 n n C15 H14 67B sing 38 n n C H15 67B sing 39 n n C H16 67B sing 40 n n C H17 67B sing 41 n n # _atom_sites.entry_id 5I80 _atom_sites.fract_transf_matrix[1][1] 0.022887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 67B A 1 201 1 67B ZZZ . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 4 DMS A 1 204 3 DMS DMS . F 5 HOH A 1 301 120 HOH HOH . F 5 HOH A 2 302 38 HOH HOH . F 5 HOH A 3 303 119 HOH HOH . F 5 HOH A 4 304 30 HOH HOH . F 5 HOH A 5 305 122 HOH HOH . F 5 HOH A 6 306 124 HOH HOH . F 5 HOH A 7 307 87 HOH HOH . F 5 HOH A 8 308 94 HOH HOH . F 5 HOH A 9 309 1 HOH HOH . F 5 HOH A 10 310 37 HOH HOH . F 5 HOH A 11 311 51 HOH HOH . F 5 HOH A 12 312 59 HOH HOH . F 5 HOH A 13 313 50 HOH HOH . F 5 HOH A 14 314 5 HOH HOH . F 5 HOH A 15 315 93 HOH HOH . F 5 HOH A 16 316 28 HOH HOH . F 5 HOH A 17 317 34 HOH HOH . F 5 HOH A 18 318 95 HOH HOH . F 5 HOH A 19 319 17 HOH HOH . F 5 HOH A 20 320 3 HOH HOH . F 5 HOH A 21 321 82 HOH HOH . F 5 HOH A 22 322 4 HOH HOH . F 5 HOH A 23 323 7 HOH HOH . F 5 HOH A 24 324 71 HOH HOH . F 5 HOH A 25 325 33 HOH HOH . F 5 HOH A 26 326 29 HOH HOH . F 5 HOH A 27 327 40 HOH HOH . F 5 HOH A 28 328 27 HOH HOH . F 5 HOH A 29 329 78 HOH HOH . F 5 HOH A 30 330 22 HOH HOH . F 5 HOH A 31 331 2 HOH HOH . F 5 HOH A 32 332 9 HOH HOH . F 5 HOH A 33 333 12 HOH HOH . F 5 HOH A 34 334 32 HOH HOH . F 5 HOH A 35 335 121 HOH HOH . F 5 HOH A 36 336 6 HOH HOH . F 5 HOH A 37 337 73 HOH HOH . F 5 HOH A 38 338 101 HOH HOH . F 5 HOH A 39 339 69 HOH HOH . F 5 HOH A 40 340 45 HOH HOH . F 5 HOH A 41 341 54 HOH HOH . F 5 HOH A 42 342 68 HOH HOH . F 5 HOH A 43 343 75 HOH HOH . F 5 HOH A 44 344 31 HOH HOH . F 5 HOH A 45 345 8 HOH HOH . F 5 HOH A 46 346 18 HOH HOH . F 5 HOH A 47 347 98 HOH HOH . F 5 HOH A 48 348 80 HOH HOH . F 5 HOH A 49 349 41 HOH HOH . F 5 HOH A 50 350 15 HOH HOH . F 5 HOH A 51 351 76 HOH HOH . F 5 HOH A 52 352 14 HOH HOH . F 5 HOH A 53 353 35 HOH HOH . F 5 HOH A 54 354 85 HOH HOH . F 5 HOH A 55 355 49 HOH HOH . F 5 HOH A 56 356 26 HOH HOH . F 5 HOH A 57 357 79 HOH HOH . F 5 HOH A 58 358 116 HOH HOH . F 5 HOH A 59 359 66 HOH HOH . F 5 HOH A 60 360 19 HOH HOH . F 5 HOH A 61 361 67 HOH HOH . F 5 HOH A 62 362 77 HOH HOH . F 5 HOH A 63 363 43 HOH HOH . F 5 HOH A 64 364 24 HOH HOH . F 5 HOH A 65 365 46 HOH HOH . F 5 HOH A 66 366 55 HOH HOH . F 5 HOH A 67 367 11 HOH HOH . F 5 HOH A 68 368 92 HOH HOH . F 5 HOH A 69 369 99 HOH HOH . F 5 HOH A 70 370 115 HOH HOH . F 5 HOH A 71 371 25 HOH HOH . F 5 HOH A 72 372 13 HOH HOH . F 5 HOH A 73 373 118 HOH HOH . F 5 HOH A 74 374 42 HOH HOH . F 5 HOH A 75 375 36 HOH HOH . F 5 HOH A 76 376 65 HOH HOH . F 5 HOH A 77 377 20 HOH HOH . F 5 HOH A 78 378 109 HOH HOH . F 5 HOH A 79 379 63 HOH HOH . F 5 HOH A 80 380 56 HOH HOH . F 5 HOH A 81 381 102 HOH HOH . F 5 HOH A 82 382 60 HOH HOH . F 5 HOH A 83 383 16 HOH HOH . F 5 HOH A 84 384 52 HOH HOH . F 5 HOH A 85 385 10 HOH HOH . F 5 HOH A 86 386 123 HOH HOH . F 5 HOH A 87 387 21 HOH HOH . F 5 HOH A 88 388 108 HOH HOH . F 5 HOH A 89 389 58 HOH HOH . F 5 HOH A 90 390 86 HOH HOH . F 5 HOH A 91 391 47 HOH HOH . F 5 HOH A 92 392 44 HOH HOH . F 5 HOH A 93 393 105 HOH HOH . F 5 HOH A 94 394 83 HOH HOH . F 5 HOH A 95 395 88 HOH HOH . F 5 HOH A 96 396 23 HOH HOH . F 5 HOH A 97 397 62 HOH HOH . F 5 HOH A 98 398 110 HOH HOH . F 5 HOH A 99 399 96 HOH HOH . F 5 HOH A 100 400 74 HOH HOH . F 5 HOH A 101 401 84 HOH HOH . F 5 HOH A 102 402 111 HOH HOH . F 5 HOH A 103 403 114 HOH HOH . F 5 HOH A 104 404 90 HOH HOH . F 5 HOH A 105 405 113 HOH HOH . F 5 HOH A 106 406 97 HOH HOH . F 5 HOH A 107 407 104 HOH HOH . F 5 HOH A 108 408 64 HOH HOH . F 5 HOH A 109 409 70 HOH HOH . F 5 HOH A 110 410 103 HOH HOH . F 5 HOH A 111 411 91 HOH HOH . F 5 HOH A 112 412 48 HOH HOH . F 5 HOH A 113 413 61 HOH HOH . F 5 HOH A 114 414 39 HOH HOH . F 5 HOH A 115 415 53 HOH HOH . F 5 HOH A 116 416 100 HOH HOH . F 5 HOH A 117 417 106 HOH HOH . F 5 HOH A 118 418 72 HOH HOH . F 5 HOH A 119 419 57 HOH HOH . F 5 HOH A 120 420 107 HOH HOH . F 5 HOH A 121 421 81 HOH HOH . F 5 HOH A 122 422 117 HOH HOH . F 5 HOH A 123 423 112 HOH HOH . F 5 HOH A 124 424 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 67B . . . B 2 -14.95 -0.386 10.22 1 21.78 ? C4 67B 201 A 1 HETATM 2 C C2 67B . . . B 2 -15.051 -0.456 7.727 1 23.11 ? C2 67B 201 A 1 HETATM 3 C C1 67B . . . B 2 -14.627 0.138 5.413 1 23.41 ? C1 67B 201 A 1 HETATM 4 C C5 67B . . . B 2 -14.707 -1.029 11.423 1 21.69 ? C5 67B 201 A 1 HETATM 5 C C8 67B . . . B 2 -14.376 -2.433 9.098 1 20.11 ? C8 67B 201 A 1 HETATM 6 C C9 67B . . . B 2 -13.658 -4.486 10.279 1 19.98 ? C9 67B 201 A 1 HETATM 7 C C6 67B . . . B 2 -14.292 -2.357 11.483 1 19.63 ? C6 67B 201 A 1 HETATM 8 C C10 67B . . . B 2 -12.653 -4.856 11.125 1 20.11 ? C10 67B 201 A 1 HETATM 9 C C11 67B . . . B 2 -11.034 -6.396 12.071 1 19.75 ? C11 67B 201 A 1 HETATM 10 O O1 67B . . . B 2 -12.069 -8.22 10.335 1 21.43 ? O1 67B 201 A 1 HETATM 11 C C12 67B . . . B 2 -12.566 -7.089 10.308 1 21.16 ? C12 67B 201 A 1 HETATM 12 N N1 67B . . . B 2 -12.134 -6.118 11.137 1 20.25 ? N1 67B 201 A 1 HETATM 13 C C13 67B . . . B 2 -13.607 -6.804 9.408 1 21.38 ? C13 67B 201 A 1 HETATM 14 N N2 67B . . . B 2 -14.251 -7.561 8.469 1 20.8 ? N2 67B 201 A 1 HETATM 15 C C16 67B . . . B 2 -15.19 -6.788 7.853 1 21.2 ? C16 67B 201 A 1 HETATM 16 C C15 67B . . . B 2 -15.175 -5.542 8.372 1 20.74 ? C15 67B 201 A 1 HETATM 17 C C14 67B . . . B 2 -14.176 -5.514 9.366 1 20.52 ? C14 67B 201 A 1 HETATM 18 C C7 67B . . . B 2 -14.131 -3.077 10.3 1 20.6 ? C7 67B 201 A 1 HETATM 19 C C3 67B . . . B 2 -14.769 -1.094 9.033 1 21.22 ? C3 67B 201 A 1 HETATM 20 O O 67B . . . B 2 -16.109 0.129 7.612 1 26.01 ? O 67B 201 A 1 HETATM 21 N N 67B . . . B 2 -14.212 -0.508 6.661 1 23.24 ? N 67B 201 A 1 HETATM 22 C C 67B . . . B 2 -12.892 -1.161 6.673 1 24.57 ? C 67B 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #