data_5I83 # _model_server_result.job_id t_NMCpbIi5lf-AGGLGXmMg _model_server_result.datetime_utc '2024-11-24 15:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 5I83 # _exptl.entry_id 5I83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.364 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-4-methyl-7-[(1R)-1-phenylethoxy]-1,3,4,5-tetrahydro-2H-1,5-benzodiazepin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I83 _cell.length_a 33.832 _cell.length_b 50.885 _cell.length_c 80.534 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N2 O2' _chem_comp.formula_weight 296.364 _chem_comp.id 68Y _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-4-methyl-7-[(1R)-1-phenylethoxy]-1,3,4,5-tetrahydro-2H-1,5-benzodiazepin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAU CAT 68Y doub 1 n y CAU CAV 68Y sing 2 n y CAH CAD 68Y sing 3 n n CAT CAS 68Y sing 4 n y CAV CAQ 68Y doub 5 n y CAD NAE 68Y sing 6 n n CAD CAC 68Y sing 7 n n NAE CAF 68Y sing 8 n n CAS CAR 68Y doub 9 n y CAQ CAO 68Y sing 10 n n CAQ CAR 68Y sing 11 n y CAO CAP 68Y sing 12 n n CAO OAN 68Y sing 13 n n CAJ CAF 68Y doub 14 n y CAJ CAK 68Y sing 15 n y CAC CAB 68Y sing 16 n n CAF CAG 68Y sing 17 n y CAB OAI 68Y doub 18 n n CAB NAA 68Y sing 19 n n OAN CAK 68Y sing 20 n n CAK CAL 68Y doub 21 n y CAG NAA 68Y sing 22 n n CAG CAM 68Y doub 23 n y CAL CAM 68Y sing 24 n y CAJ H1 68Y sing 25 n n NAE H2 68Y sing 26 n n CAD H3 68Y sing 27 n n CAH H4 68Y sing 28 n n CAH H5 68Y sing 29 n n CAH H6 68Y sing 30 n n CAC H7 68Y sing 31 n n CAC H8 68Y sing 32 n n NAA H9 68Y sing 33 n n CAM H10 68Y sing 34 n n CAL H11 68Y sing 35 n n CAO H12 68Y sing 36 n n CAP H13 68Y sing 37 n n CAP H14 68Y sing 38 n n CAP H15 68Y sing 39 n n CAR H16 68Y sing 40 n n CAS H17 68Y sing 41 n n CAT H18 68Y sing 42 n n CAU H19 68Y sing 43 n n CAV H20 68Y sing 44 n n # _atom_sites.entry_id 5I83 _atom_sites.fract_transf_matrix[1][1] 0.029558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SCN A 1 1201 1 SCN SCN . C 3 68Y A 1 1202 1 68Y 006 . D 4 HOH A 1 1301 211 HOH HOH . D 4 HOH A 2 1302 195 HOH HOH . D 4 HOH A 3 1303 157 HOH HOH . D 4 HOH A 4 1304 198 HOH HOH . D 4 HOH A 5 1305 199 HOH HOH . D 4 HOH A 6 1306 72 HOH HOH . D 4 HOH A 7 1307 147 HOH HOH . D 4 HOH A 8 1308 191 HOH HOH . D 4 HOH A 9 1309 161 HOH HOH . D 4 HOH A 10 1310 214 HOH HOH . D 4 HOH A 11 1311 209 HOH HOH . D 4 HOH A 12 1312 1 HOH HOH . D 4 HOH A 13 1313 150 HOH HOH . D 4 HOH A 14 1314 26 HOH HOH . D 4 HOH A 15 1315 192 HOH HOH . D 4 HOH A 16 1316 128 HOH HOH . D 4 HOH A 17 1317 41 HOH HOH . D 4 HOH A 18 1318 133 HOH HOH . D 4 HOH A 19 1319 141 HOH HOH . D 4 HOH A 20 1320 32 HOH HOH . D 4 HOH A 21 1321 136 HOH HOH . D 4 HOH A 22 1322 54 HOH HOH . D 4 HOH A 23 1323 4 HOH HOH . D 4 HOH A 24 1324 47 HOH HOH . D 4 HOH A 25 1325 15 HOH HOH . D 4 HOH A 26 1326 188 HOH HOH . D 4 HOH A 27 1327 58 HOH HOH . D 4 HOH A 28 1328 148 HOH HOH . D 4 HOH A 29 1329 117 HOH HOH . D 4 HOH A 30 1330 151 HOH HOH . D 4 HOH A 31 1331 139 HOH HOH . D 4 HOH A 32 1332 12 HOH HOH . D 4 HOH A 33 1333 164 HOH HOH . D 4 HOH A 34 1334 66 HOH HOH . D 4 HOH A 35 1335 39 HOH HOH . D 4 HOH A 36 1336 137 HOH HOH . D 4 HOH A 37 1337 36 HOH HOH . D 4 HOH A 38 1338 9 HOH HOH . D 4 HOH A 39 1339 18 HOH HOH . D 4 HOH A 40 1340 87 HOH HOH . D 4 HOH A 41 1341 17 HOH HOH . D 4 HOH A 42 1342 28 HOH HOH . D 4 HOH A 43 1343 68 HOH HOH . D 4 HOH A 44 1344 212 HOH HOH . D 4 HOH A 45 1345 42 HOH HOH . D 4 HOH A 46 1346 57 HOH HOH . D 4 HOH A 47 1347 34 HOH HOH . D 4 HOH A 48 1348 53 HOH HOH . D 4 HOH A 49 1349 106 HOH HOH . D 4 HOH A 50 1350 145 HOH HOH . D 4 HOH A 51 1351 40 HOH HOH . D 4 HOH A 52 1352 173 HOH HOH . D 4 HOH A 53 1353 44 HOH HOH . D 4 HOH A 54 1354 51 HOH HOH . D 4 HOH A 55 1355 46 HOH HOH . D 4 HOH A 56 1356 22 HOH HOH . D 4 HOH A 57 1357 129 HOH HOH . D 4 HOH A 58 1358 127 HOH HOH . D 4 HOH A 59 1359 91 HOH HOH . D 4 HOH A 60 1360 81 HOH HOH . D 4 HOH A 61 1361 5 HOH HOH . D 4 HOH A 62 1362 63 HOH HOH . D 4 HOH A 63 1363 52 HOH HOH . D 4 HOH A 64 1364 19 HOH HOH . D 4 HOH A 65 1365 123 HOH HOH . D 4 HOH A 66 1366 216 HOH HOH . D 4 HOH A 67 1367 61 HOH HOH . D 4 HOH A 68 1368 2 HOH HOH . D 4 HOH A 69 1369 160 HOH HOH . D 4 HOH A 70 1370 118 HOH HOH . D 4 HOH A 71 1371 50 HOH HOH . D 4 HOH A 72 1372 56 HOH HOH . D 4 HOH A 73 1373 64 HOH HOH . D 4 HOH A 74 1374 7 HOH HOH . D 4 HOH A 75 1375 30 HOH HOH . D 4 HOH A 76 1376 70 HOH HOH . D 4 HOH A 77 1377 29 HOH HOH . D 4 HOH A 78 1378 76 HOH HOH . D 4 HOH A 79 1379 181 HOH HOH . D 4 HOH A 80 1380 8 HOH HOH . D 4 HOH A 81 1381 119 HOH HOH . D 4 HOH A 82 1382 20 HOH HOH . D 4 HOH A 83 1383 31 HOH HOH . D 4 HOH A 84 1384 62 HOH HOH . D 4 HOH A 85 1385 48 HOH HOH . D 4 HOH A 86 1386 158 HOH HOH . D 4 HOH A 87 1387 65 HOH HOH . D 4 HOH A 88 1388 174 HOH HOH . D 4 HOH A 89 1389 49 HOH HOH . D 4 HOH A 90 1390 13 HOH HOH . D 4 HOH A 91 1391 86 HOH HOH . D 4 HOH A 92 1392 43 HOH HOH . D 4 HOH A 93 1393 166 HOH HOH . D 4 HOH A 94 1394 142 HOH HOH . D 4 HOH A 95 1395 201 HOH HOH . D 4 HOH A 96 1396 101 HOH HOH . D 4 HOH A 97 1397 10 HOH HOH . D 4 HOH A 98 1398 130 HOH HOH . D 4 HOH A 99 1399 16 HOH HOH . D 4 HOH A 100 1400 23 HOH HOH . D 4 HOH A 101 1401 134 HOH HOH . D 4 HOH A 102 1402 206 HOH HOH . D 4 HOH A 103 1403 175 HOH HOH . D 4 HOH A 104 1404 114 HOH HOH . D 4 HOH A 105 1405 77 HOH HOH . D 4 HOH A 106 1406 105 HOH HOH . D 4 HOH A 107 1407 33 HOH HOH . D 4 HOH A 108 1408 60 HOH HOH . D 4 HOH A 109 1409 14 HOH HOH . D 4 HOH A 110 1410 107 HOH HOH . D 4 HOH A 111 1411 79 HOH HOH . D 4 HOH A 112 1412 194 HOH HOH . D 4 HOH A 113 1413 6 HOH HOH . D 4 HOH A 114 1414 193 HOH HOH . D 4 HOH A 115 1415 21 HOH HOH . D 4 HOH A 116 1416 73 HOH HOH . D 4 HOH A 117 1417 196 HOH HOH . D 4 HOH A 118 1418 45 HOH HOH . D 4 HOH A 119 1419 93 HOH HOH . D 4 HOH A 120 1420 124 HOH HOH . D 4 HOH A 121 1421 84 HOH HOH . D 4 HOH A 122 1422 131 HOH HOH . D 4 HOH A 123 1423 176 HOH HOH . D 4 HOH A 124 1424 126 HOH HOH . D 4 HOH A 125 1425 75 HOH HOH . D 4 HOH A 126 1426 172 HOH HOH . D 4 HOH A 127 1427 135 HOH HOH . D 4 HOH A 128 1428 186 HOH HOH . D 4 HOH A 129 1429 178 HOH HOH . D 4 HOH A 130 1430 95 HOH HOH . D 4 HOH A 131 1431 38 HOH HOH . D 4 HOH A 132 1432 185 HOH HOH . D 4 HOH A 133 1433 153 HOH HOH . D 4 HOH A 134 1434 210 HOH HOH . D 4 HOH A 135 1435 24 HOH HOH . D 4 HOH A 136 1436 143 HOH HOH . D 4 HOH A 137 1437 197 HOH HOH . D 4 HOH A 138 1438 97 HOH HOH . D 4 HOH A 139 1439 85 HOH HOH . D 4 HOH A 140 1440 99 HOH HOH . D 4 HOH A 141 1441 108 HOH HOH . D 4 HOH A 142 1442 170 HOH HOH . D 4 HOH A 143 1443 177 HOH HOH . D 4 HOH A 144 1444 92 HOH HOH . D 4 HOH A 145 1445 69 HOH HOH . D 4 HOH A 146 1446 163 HOH HOH . D 4 HOH A 147 1447 88 HOH HOH . D 4 HOH A 148 1448 3 HOH HOH . D 4 HOH A 149 1449 138 HOH HOH . D 4 HOH A 150 1450 115 HOH HOH . D 4 HOH A 151 1451 146 HOH HOH . D 4 HOH A 152 1452 122 HOH HOH . D 4 HOH A 153 1453 59 HOH HOH . D 4 HOH A 154 1454 182 HOH HOH . D 4 HOH A 155 1455 179 HOH HOH . D 4 HOH A 156 1456 144 HOH HOH . D 4 HOH A 157 1457 189 HOH HOH . D 4 HOH A 158 1458 94 HOH HOH . D 4 HOH A 159 1459 149 HOH HOH . D 4 HOH A 160 1460 156 HOH HOH . D 4 HOH A 161 1461 152 HOH HOH . D 4 HOH A 162 1462 11 HOH HOH . D 4 HOH A 163 1463 165 HOH HOH . D 4 HOH A 164 1464 71 HOH HOH . D 4 HOH A 165 1465 120 HOH HOH . D 4 HOH A 166 1466 74 HOH HOH . D 4 HOH A 167 1467 78 HOH HOH . D 4 HOH A 168 1468 37 HOH HOH . D 4 HOH A 169 1469 140 HOH HOH . D 4 HOH A 170 1470 89 HOH HOH . D 4 HOH A 171 1471 82 HOH HOH . D 4 HOH A 172 1472 184 HOH HOH . D 4 HOH A 173 1473 25 HOH HOH . D 4 HOH A 174 1474 202 HOH HOH . D 4 HOH A 175 1475 67 HOH HOH . D 4 HOH A 176 1476 27 HOH HOH . D 4 HOH A 177 1477 200 HOH HOH . D 4 HOH A 178 1478 208 HOH HOH . D 4 HOH A 179 1479 121 HOH HOH . D 4 HOH A 180 1480 132 HOH HOH . D 4 HOH A 181 1481 180 HOH HOH . D 4 HOH A 182 1482 90 HOH HOH . D 4 HOH A 183 1483 155 HOH HOH . D 4 HOH A 184 1484 169 HOH HOH . D 4 HOH A 185 1485 207 HOH HOH . D 4 HOH A 186 1486 187 HOH HOH . D 4 HOH A 187 1487 80 HOH HOH . D 4 HOH A 188 1488 55 HOH HOH . D 4 HOH A 189 1489 213 HOH HOH . D 4 HOH A 190 1490 204 HOH HOH . D 4 HOH A 191 1491 167 HOH HOH . D 4 HOH A 192 1492 98 HOH HOH . D 4 HOH A 193 1493 110 HOH HOH . D 4 HOH A 194 1494 111 HOH HOH . D 4 HOH A 195 1495 168 HOH HOH . D 4 HOH A 196 1496 162 HOH HOH . D 4 HOH A 197 1497 159 HOH HOH . D 4 HOH A 198 1498 190 HOH HOH . D 4 HOH A 199 1499 205 HOH HOH . D 4 HOH A 200 1500 116 HOH HOH . D 4 HOH A 201 1501 203 HOH HOH . D 4 HOH A 202 1502 215 HOH HOH . D 4 HOH A 203 1503 35 HOH HOH . D 4 HOH A 204 1504 83 HOH HOH . D 4 HOH A 205 1505 125 HOH HOH . D 4 HOH A 206 1506 100 HOH HOH . D 4 HOH A 207 1507 102 HOH HOH . D 4 HOH A 208 1508 96 HOH HOH . D 4 HOH A 209 1509 171 HOH HOH . D 4 HOH A 210 1510 154 HOH HOH . D 4 HOH A 211 1511 183 HOH HOH . D 4 HOH A 212 1512 109 HOH HOH . D 4 HOH A 213 1513 112 HOH HOH . D 4 HOH A 214 1514 103 HOH HOH . D 4 HOH A 215 1515 113 HOH HOH . D 4 HOH A 216 1516 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ 68Y . . . C 3 2.048 -2.067 3.324 1 15.82 ? CAJ 68Y 1202 A 1 HETATM 2 C CAF 68Y . . . C 3 3.439 -2.175 3.43 1 13.62 ? CAF 68Y 1202 A 1 HETATM 3 N NAE 68Y . . . C 3 4.159 -2.116 2.245 1 15.61 ? NAE 68Y 1202 A 1 HETATM 4 C CAD 68Y . . . C 3 5.385 -1.29 2.035 1 14.21 ? CAD 68Y 1202 A 1 HETATM 5 C CAH 68Y . . . C 3 6.405 -2.011 1.158 1 15.81 ? CAH 68Y 1202 A 1 HETATM 6 C CAC 68Y . . . C 3 6.041 -0.885 3.372 1 14.12 ? CAC 68Y 1202 A 1 HETATM 7 C CAB 68Y . . . C 3 6.357 -2.044 4.126 1 14.28 ? CAB 68Y 1202 A 1 HETATM 8 O OAI 68Y . . . C 3 7.507 -2.476 4.276 1 13.98 ? OAI 68Y 1202 A 1 HETATM 9 N NAA 68Y . . . C 3 5.378 -2.694 4.809 1 13.78 ? NAA 68Y 1202 A 1 HETATM 10 C CAG 68Y . . . C 3 4.01 -2.426 4.644 1 15.12 ? CAG 68Y 1202 A 1 HETATM 11 C CAM 68Y . . . C 3 3.234 -2.536 5.784 1 17.32 ? CAM 68Y 1202 A 1 HETATM 12 C CAL 68Y . . . C 3 1.844 -2.509 5.678 1 18.51 ? CAL 68Y 1202 A 1 HETATM 13 C CAK 68Y . . . C 3 1.24 -2.301 4.441 1 17.04 ? CAK 68Y 1202 A 1 HETATM 14 O OAN 68Y . . . C 3 -0.138 -2.22 4.399 1 19.9 ? OAN 68Y 1202 A 1 HETATM 15 C CAO 68Y . . . C 3 -0.807 -2.389 3.141 1 18.82 ? CAO 68Y 1202 A 1 HETATM 16 C CAP 68Y . . . C 3 -2.287 -2.109 3.39 1 23.55 ? CAP 68Y 1202 A 1 HETATM 17 C CAQ 68Y . . . C 3 -0.699 -3.696 2.578 1 19.96 ? CAQ 68Y 1202 A 1 HETATM 18 C CAR 68Y . . . C 3 -0.146 -4.814 3.213 1 21.62 ? CAR 68Y 1202 A 1 HETATM 19 C CAS 68Y . . . C 3 -0.16 -6.062 2.549 1 22.08 ? CAS 68Y 1202 A 1 HETATM 20 C CAT 68Y . . . C 3 -0.644 -6.163 1.25 1 22.02 ? CAT 68Y 1202 A 1 HETATM 21 C CAU 68Y . . . C 3 -1.163 -5.036 0.619 1 24.29 ? CAU 68Y 1202 A 1 HETATM 22 C CAV 68Y . . . C 3 -1.193 -3.828 1.285 1 24.33 ? CAV 68Y 1202 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 691 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #