data_5I88 # _model_server_result.job_id x7EtV4rivgpLg8iFivarJQ _model_server_result.datetime_utc '2024-10-19 03:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5I88 # _exptl.entry_id 5I88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I88 _cell.length_a 44.176 _cell.length_b 48.561 _cell.length_c 60.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C5 _struct_conn.ptnr1_label_comp_id PGE _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PGE _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id O2 _struct_conn.ptnr2_label_comp_id GOL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GOL _struct_conn.ptnr2_auth_seq_id 206 _struct_conn.ptnr2_symmetry 4_546 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.375 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 316 n n C1 C2 PGE sing 317 n n C1 H1 PGE sing 318 n n C1 H12 PGE sing 319 n n O1 HO1 PGE sing 320 n n C2 O2 PGE sing 321 n n C2 H2 PGE sing 322 n n C2 H22 PGE sing 323 n n O2 C3 PGE sing 324 n n C3 C4 PGE sing 325 n n C3 H3 PGE sing 326 n n C3 H32 PGE sing 327 n n C4 O3 PGE sing 328 n n C4 H4 PGE sing 329 n n C4 H42 PGE sing 330 n n O4 C6 PGE sing 331 n n O4 HO4 PGE sing 332 n n C6 C5 PGE sing 333 n n C6 H6 PGE sing 334 n n C6 H62 PGE sing 335 n n C5 O3 PGE sing 336 n n C5 H5 PGE sing 337 n n C5 H52 PGE sing 338 n n # _atom_sites.entry_id 5I88 _atom_sites.fract_transf_matrix[1][1] 0.022637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 201 2 PGE 12P . C 3 EDO A 1 202 3 EDO EDO . D 3 EDO A 1 203 4 EDO EDO . E 4 DMS A 1 204 5 DMS DMS . F 5 69G A 1 205 1 69G DRG . G 6 GOL A 1 206 1 GOL GOL . H 7 HOH A 1 301 71 HOH HOH . H 7 HOH A 2 302 85 HOH HOH . H 7 HOH A 3 303 98 HOH HOH . H 7 HOH A 4 304 44 HOH HOH . H 7 HOH A 5 305 15 HOH HOH . H 7 HOH A 6 306 57 HOH HOH . H 7 HOH A 7 307 80 HOH HOH . H 7 HOH A 8 308 100 HOH HOH . H 7 HOH A 9 309 8 HOH HOH . H 7 HOH A 10 310 60 HOH HOH . H 7 HOH A 11 311 123 HOH HOH . H 7 HOH A 12 312 130 HOH HOH . H 7 HOH A 13 313 48 HOH HOH . H 7 HOH A 14 314 43 HOH HOH . H 7 HOH A 15 315 9 HOH HOH . H 7 HOH A 16 316 3 HOH HOH . H 7 HOH A 17 317 67 HOH HOH . H 7 HOH A 18 318 69 HOH HOH . H 7 HOH A 19 319 122 HOH HOH . H 7 HOH A 20 320 63 HOH HOH . H 7 HOH A 21 321 23 HOH HOH . H 7 HOH A 22 322 13 HOH HOH . H 7 HOH A 23 323 22 HOH HOH . H 7 HOH A 24 324 10 HOH HOH . H 7 HOH A 25 325 35 HOH HOH . H 7 HOH A 26 326 4 HOH HOH . H 7 HOH A 27 327 21 HOH HOH . H 7 HOH A 28 328 11 HOH HOH . H 7 HOH A 29 329 5 HOH HOH . H 7 HOH A 30 330 24 HOH HOH . H 7 HOH A 31 331 38 HOH HOH . H 7 HOH A 32 332 1 HOH HOH . H 7 HOH A 33 333 41 HOH HOH . H 7 HOH A 34 334 36 HOH HOH . H 7 HOH A 35 335 117 HOH HOH . H 7 HOH A 36 336 97 HOH HOH . H 7 HOH A 37 337 89 HOH HOH . H 7 HOH A 38 338 6 HOH HOH . H 7 HOH A 39 339 74 HOH HOH . H 7 HOH A 40 340 45 HOH HOH . H 7 HOH A 41 341 55 HOH HOH . H 7 HOH A 42 342 77 HOH HOH . H 7 HOH A 43 343 26 HOH HOH . H 7 HOH A 44 344 33 HOH HOH . H 7 HOH A 45 345 86 HOH HOH . H 7 HOH A 46 346 25 HOH HOH . H 7 HOH A 47 347 46 HOH HOH . H 7 HOH A 48 348 39 HOH HOH . H 7 HOH A 49 349 37 HOH HOH . H 7 HOH A 50 350 2 HOH HOH . H 7 HOH A 51 351 14 HOH HOH . H 7 HOH A 52 352 87 HOH HOH . H 7 HOH A 53 353 34 HOH HOH . H 7 HOH A 54 354 111 HOH HOH . H 7 HOH A 55 355 19 HOH HOH . H 7 HOH A 56 356 72 HOH HOH . H 7 HOH A 57 357 64 HOH HOH . H 7 HOH A 58 358 83 HOH HOH . H 7 HOH A 59 359 121 HOH HOH . H 7 HOH A 60 360 28 HOH HOH . H 7 HOH A 61 361 56 HOH HOH . H 7 HOH A 62 362 68 HOH HOH . H 7 HOH A 63 363 12 HOH HOH . H 7 HOH A 64 364 58 HOH HOH . H 7 HOH A 65 365 29 HOH HOH . H 7 HOH A 66 366 40 HOH HOH . H 7 HOH A 67 367 75 HOH HOH . H 7 HOH A 68 368 107 HOH HOH . H 7 HOH A 69 369 128 HOH HOH . H 7 HOH A 70 370 114 HOH HOH . H 7 HOH A 71 371 47 HOH HOH . H 7 HOH A 72 372 52 HOH HOH . H 7 HOH A 73 373 7 HOH HOH . H 7 HOH A 74 374 109 HOH HOH . H 7 HOH A 75 375 66 HOH HOH . H 7 HOH A 76 376 78 HOH HOH . H 7 HOH A 77 377 70 HOH HOH . H 7 HOH A 78 378 27 HOH HOH . H 7 HOH A 79 379 106 HOH HOH . H 7 HOH A 80 380 62 HOH HOH . H 7 HOH A 81 381 20 HOH HOH . H 7 HOH A 82 382 125 HOH HOH . H 7 HOH A 83 383 105 HOH HOH . H 7 HOH A 84 384 18 HOH HOH . H 7 HOH A 85 385 30 HOH HOH . H 7 HOH A 86 386 82 HOH HOH . H 7 HOH A 87 387 42 HOH HOH . H 7 HOH A 88 388 51 HOH HOH . H 7 HOH A 89 389 32 HOH HOH . H 7 HOH A 90 390 101 HOH HOH . H 7 HOH A 91 391 110 HOH HOH . H 7 HOH A 92 392 16 HOH HOH . H 7 HOH A 93 393 65 HOH HOH . H 7 HOH A 94 394 88 HOH HOH . H 7 HOH A 95 395 99 HOH HOH . H 7 HOH A 96 396 116 HOH HOH . H 7 HOH A 97 397 73 HOH HOH . H 7 HOH A 98 398 79 HOH HOH . H 7 HOH A 99 399 31 HOH HOH . H 7 HOH A 100 400 95 HOH HOH . H 7 HOH A 101 401 108 HOH HOH . H 7 HOH A 102 402 54 HOH HOH . H 7 HOH A 103 403 49 HOH HOH . H 7 HOH A 104 404 81 HOH HOH . H 7 HOH A 105 405 119 HOH HOH . H 7 HOH A 106 406 129 HOH HOH . H 7 HOH A 107 407 50 HOH HOH . H 7 HOH A 108 408 53 HOH HOH . H 7 HOH A 109 409 102 HOH HOH . H 7 HOH A 110 410 90 HOH HOH . H 7 HOH A 111 411 115 HOH HOH . H 7 HOH A 112 412 76 HOH HOH . H 7 HOH A 113 413 113 HOH HOH . H 7 HOH A 114 414 17 HOH HOH . H 7 HOH A 115 415 127 HOH HOH . H 7 HOH A 116 416 126 HOH HOH . H 7 HOH A 117 417 61 HOH HOH . H 7 HOH A 118 418 118 HOH HOH . H 7 HOH A 119 419 92 HOH HOH . H 7 HOH A 120 420 103 HOH HOH . H 7 HOH A 121 421 124 HOH HOH . H 7 HOH A 122 422 91 HOH HOH . H 7 HOH A 123 423 59 HOH HOH . H 7 HOH A 124 424 112 HOH HOH . H 7 HOH A 125 425 96 HOH HOH . H 7 HOH A 126 426 84 HOH HOH . H 7 HOH A 127 427 93 HOH HOH . H 7 HOH A 128 428 120 HOH HOH . H 7 HOH A 129 429 94 HOH HOH . H 7 HOH A 130 430 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . A . B 2 -4.412 -4.186 35.635 0.37 34.09 ? C1 PGE 201 A 1 HETATM 2 C C1 PGE . B . B 2 -4.547 -4.181 35.595 0.63 28.91 ? C1 PGE 201 A 1 HETATM 3 O O1 PGE . A . B 2 -5.309 -5.259 35.724 0.37 31.83 ? O1 PGE 201 A 1 HETATM 4 O O1 PGE . B . B 2 -5.266 -5.362 35.796 0.63 21.38 ? O1 PGE 201 A 1 HETATM 5 C C2 PGE . A . B 2 -4.874 -3.057 36.553 0.37 36.18 ? C2 PGE 201 A 1 HETATM 6 C C2 PGE . B . B 2 -4.746 -3.267 36.8 0.63 34.92 ? C2 PGE 201 A 1 HETATM 7 O O2 PGE . A . B 2 -5.179 -3.585 37.812 0.37 38.87 ? O2 PGE 201 A 1 HETATM 8 O O2 PGE . B . B 2 -5.106 -4.037 37.912 0.63 40.12 ? O2 PGE 201 A 1 HETATM 9 C C3 PGE . A . B 2 -4.269 -4.548 38.263 0.37 40.04 ? C3 PGE 201 A 1 HETATM 10 C C3 PGE . B . B 2 -4.065 -4.808 38.437 0.63 43.16 ? C3 PGE 201 A 1 HETATM 11 C C4 PGE . A . B 2 -4.928 -5.373 39.364 0.37 41.58 ? C4 PGE 201 A 1 HETATM 12 C C4 PGE . B . B 2 -4.598 -5.732 39.532 0.63 45.83 ? C4 PGE 201 A 1 HETATM 13 O O4 PGE . A . B 2 -4.522 -4.841 42.099 0.37 42.19 ? O4 PGE 201 A 1 HETATM 14 O O4 PGE . B . B 2 -2.075 -5.883 41.986 0.63 47.07 ? O4 PGE 201 A 1 HETATM 15 C C6 PGE . A . B 2 -3.355 -4.681 41.345 0.37 42.18 ? C6 PGE 201 A 1 HETATM 16 C C6 PGE . B . B 2 -3.417 -6.28 41.952 0.63 47.95 ? C6 PGE 201 A 1 HETATM 17 C C5 PGE . A . B 2 -3.011 -5.975 40.607 0.37 42.28 ? C5 PGE 201 A 1 HETATM 18 C C5 PGE . B . B 2 -3.601 -7.391 40.92 0.63 48.11 ? C5 PGE 201 A 1 HETATM 19 O O3 PGE . A . B 2 -4.069 -6.393 39.787 0.37 42.1 ? O3 PGE 201 A 1 HETATM 20 O O3 PGE . B . B 2 -3.734 -6.827 39.645 0.63 47.83 ? O3 PGE 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #