data_5I88
#
_model_server_result.job_id            Zzx0hoBohT8PNo3ZVJ4nsQ 
_model_server_result.datetime_utc      '2024-11-22 20:52:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5I88 
#
_exptl.entry_id    5I88 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5I88 
_cell.length_a            44.176 
_cell.length_b            48.561 
_cell.length_c            60.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C5 
_struct_conn.ptnr1_label_comp_id            PGE 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PGE 
_struct_conn.ptnr1_auth_seq_id              201 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            G 
_struct_conn.ptnr2_label_atom_id            O2 
_struct_conn.ptnr2_label_comp_id            GOL 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             GOL 
_struct_conn.ptnr2_auth_seq_id              206 
_struct_conn.ptnr2_symmetry                 4_546 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        B 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.375 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 140 n n 
C1 C2 EDO sing 141 n n 
C1 H11 EDO sing 142 n n 
C1 H12 EDO sing 143 n n 
O1 HO1 EDO sing 144 n n 
C2 O2 EDO sing 145 n n 
C2 H21 EDO sing 146 n n 
C2 H22 EDO sing 147 n n 
O2 HO2 EDO sing 148 n n 
#
_atom_sites.entry_id                     5I88 
_atom_sites.fract_transf_matrix[1][1]    0.022637 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PGE A 1 201 2 PGE 12P . 
C 3 EDO A 1 202 3 EDO EDO . 
D 3 EDO A 1 203 4 EDO EDO . 
E 4 DMS A 1 204 5 DMS DMS . 
F 5 69G A 1 205 1 69G DRG . 
G 6 GOL A 1 206 1 GOL GOL . 
H 7 HOH A 1 301 71 HOH HOH . 
H 7 HOH A 2 302 85 HOH HOH . 
H 7 HOH A 3 303 98 HOH HOH . 
H 7 HOH A 4 304 44 HOH HOH . 
H 7 HOH A 5 305 15 HOH HOH . 
H 7 HOH A 6 306 57 HOH HOH . 
H 7 HOH A 7 307 80 HOH HOH . 
H 7 HOH A 8 308 100 HOH HOH . 
H 7 HOH A 9 309 8 HOH HOH . 
H 7 HOH A 10 310 60 HOH HOH . 
H 7 HOH A 11 311 123 HOH HOH . 
H 7 HOH A 12 312 130 HOH HOH . 
H 7 HOH A 13 313 48 HOH HOH . 
H 7 HOH A 14 314 43 HOH HOH . 
H 7 HOH A 15 315 9 HOH HOH . 
H 7 HOH A 16 316 3 HOH HOH . 
H 7 HOH A 17 317 67 HOH HOH . 
H 7 HOH A 18 318 69 HOH HOH . 
H 7 HOH A 19 319 122 HOH HOH . 
H 7 HOH A 20 320 63 HOH HOH . 
H 7 HOH A 21 321 23 HOH HOH . 
H 7 HOH A 22 322 13 HOH HOH . 
H 7 HOH A 23 323 22 HOH HOH . 
H 7 HOH A 24 324 10 HOH HOH . 
H 7 HOH A 25 325 35 HOH HOH . 
H 7 HOH A 26 326 4 HOH HOH . 
H 7 HOH A 27 327 21 HOH HOH . 
H 7 HOH A 28 328 11 HOH HOH . 
H 7 HOH A 29 329 5 HOH HOH . 
H 7 HOH A 30 330 24 HOH HOH . 
H 7 HOH A 31 331 38 HOH HOH . 
H 7 HOH A 32 332 1 HOH HOH . 
H 7 HOH A 33 333 41 HOH HOH . 
H 7 HOH A 34 334 36 HOH HOH . 
H 7 HOH A 35 335 117 HOH HOH . 
H 7 HOH A 36 336 97 HOH HOH . 
H 7 HOH A 37 337 89 HOH HOH . 
H 7 HOH A 38 338 6 HOH HOH . 
H 7 HOH A 39 339 74 HOH HOH . 
H 7 HOH A 40 340 45 HOH HOH . 
H 7 HOH A 41 341 55 HOH HOH . 
H 7 HOH A 42 342 77 HOH HOH . 
H 7 HOH A 43 343 26 HOH HOH . 
H 7 HOH A 44 344 33 HOH HOH . 
H 7 HOH A 45 345 86 HOH HOH . 
H 7 HOH A 46 346 25 HOH HOH . 
H 7 HOH A 47 347 46 HOH HOH . 
H 7 HOH A 48 348 39 HOH HOH . 
H 7 HOH A 49 349 37 HOH HOH . 
H 7 HOH A 50 350 2 HOH HOH . 
H 7 HOH A 51 351 14 HOH HOH . 
H 7 HOH A 52 352 87 HOH HOH . 
H 7 HOH A 53 353 34 HOH HOH . 
H 7 HOH A 54 354 111 HOH HOH . 
H 7 HOH A 55 355 19 HOH HOH . 
H 7 HOH A 56 356 72 HOH HOH . 
H 7 HOH A 57 357 64 HOH HOH . 
H 7 HOH A 58 358 83 HOH HOH . 
H 7 HOH A 59 359 121 HOH HOH . 
H 7 HOH A 60 360 28 HOH HOH . 
H 7 HOH A 61 361 56 HOH HOH . 
H 7 HOH A 62 362 68 HOH HOH . 
H 7 HOH A 63 363 12 HOH HOH . 
H 7 HOH A 64 364 58 HOH HOH . 
H 7 HOH A 65 365 29 HOH HOH . 
H 7 HOH A 66 366 40 HOH HOH . 
H 7 HOH A 67 367 75 HOH HOH . 
H 7 HOH A 68 368 107 HOH HOH . 
H 7 HOH A 69 369 128 HOH HOH . 
H 7 HOH A 70 370 114 HOH HOH . 
H 7 HOH A 71 371 47 HOH HOH . 
H 7 HOH A 72 372 52 HOH HOH . 
H 7 HOH A 73 373 7 HOH HOH . 
H 7 HOH A 74 374 109 HOH HOH . 
H 7 HOH A 75 375 66 HOH HOH . 
H 7 HOH A 76 376 78 HOH HOH . 
H 7 HOH A 77 377 70 HOH HOH . 
H 7 HOH A 78 378 27 HOH HOH . 
H 7 HOH A 79 379 106 HOH HOH . 
H 7 HOH A 80 380 62 HOH HOH . 
H 7 HOH A 81 381 20 HOH HOH . 
H 7 HOH A 82 382 125 HOH HOH . 
H 7 HOH A 83 383 105 HOH HOH . 
H 7 HOH A 84 384 18 HOH HOH . 
H 7 HOH A 85 385 30 HOH HOH . 
H 7 HOH A 86 386 82 HOH HOH . 
H 7 HOH A 87 387 42 HOH HOH . 
H 7 HOH A 88 388 51 HOH HOH . 
H 7 HOH A 89 389 32 HOH HOH . 
H 7 HOH A 90 390 101 HOH HOH . 
H 7 HOH A 91 391 110 HOH HOH . 
H 7 HOH A 92 392 16 HOH HOH . 
H 7 HOH A 93 393 65 HOH HOH . 
H 7 HOH A 94 394 88 HOH HOH . 
H 7 HOH A 95 395 99 HOH HOH . 
H 7 HOH A 96 396 116 HOH HOH . 
H 7 HOH A 97 397 73 HOH HOH . 
H 7 HOH A 98 398 79 HOH HOH . 
H 7 HOH A 99 399 31 HOH HOH . 
H 7 HOH A 100 400 95 HOH HOH . 
H 7 HOH A 101 401 108 HOH HOH . 
H 7 HOH A 102 402 54 HOH HOH . 
H 7 HOH A 103 403 49 HOH HOH . 
H 7 HOH A 104 404 81 HOH HOH . 
H 7 HOH A 105 405 119 HOH HOH . 
H 7 HOH A 106 406 129 HOH HOH . 
H 7 HOH A 107 407 50 HOH HOH . 
H 7 HOH A 108 408 53 HOH HOH . 
H 7 HOH A 109 409 102 HOH HOH . 
H 7 HOH A 110 410 90 HOH HOH . 
H 7 HOH A 111 411 115 HOH HOH . 
H 7 HOH A 112 412 76 HOH HOH . 
H 7 HOH A 113 413 113 HOH HOH . 
H 7 HOH A 114 414 17 HOH HOH . 
H 7 HOH A 115 415 127 HOH HOH . 
H 7 HOH A 116 416 126 HOH HOH . 
H 7 HOH A 117 417 61 HOH HOH . 
H 7 HOH A 118 418 118 HOH HOH . 
H 7 HOH A 119 419 92 HOH HOH . 
H 7 HOH A 120 420 103 HOH HOH . 
H 7 HOH A 121 421 124 HOH HOH . 
H 7 HOH A 122 422 91 HOH HOH . 
H 7 HOH A 123 423 59 HOH HOH . 
H 7 HOH A 124 424 112 HOH HOH . 
H 7 HOH A 125 425 96 HOH HOH . 
H 7 HOH A 126 426 84 HOH HOH . 
H 7 HOH A 127 427 93 HOH HOH . 
H 7 HOH A 128 428 120 HOH HOH . 
H 7 HOH A 129 429 94 HOH HOH . 
H 7 HOH A 130 430 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -10.102 -17.111 16.701 1 29.88 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . D 3 -10.613 -16.015 17.475 1 27.41 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . D 3 -10.616 -18.435 17.245 1 32.37 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . D 3 -12.041 -18.399 17.345 1 32.37 ? O2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#