data_5I88 # _model_server_result.job_id Ou0e5u32pYUcGpM1Ne95Uw _model_server_result.datetime_utc '2024-11-22 20:26:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5I88 # _exptl.entry_id 5I88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.4 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{6-[(2E)-but-2-en-1-yl]-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl}-N,N-dimethylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I88 _cell.length_a 44.176 _cell.length_b 48.561 _cell.length_c 60.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C5 _struct_conn.ptnr1_label_comp_id PGE _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PGE _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id O2 _struct_conn.ptnr2_label_comp_id GOL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GOL _struct_conn.ptnr2_auth_seq_id 206 _struct_conn.ptnr2_symmetry 4_546 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.375 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H21 N3 O2' _chem_comp.formula_weight 335.4 _chem_comp.id 69G _chem_comp.mon_nstd_flag . _chem_comp.name 3-{6-[(2E)-but-2-en-1-yl]-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-4-yl}-N,N-dimethylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 N24 69G sing 1 n n N24 C26 69G sing 2 n n N24 C22 69G sing 3 n n O23 C22 69G doub 4 n n C22 C20 69G sing 5 n n C10 N11 69G sing 6 n y C10 C9 69G doub 7 n y N11 C13 69G sing 8 n y C9 C8 69G sing 9 n y C21 C20 69G doub 10 n y C21 C16 69G sing 11 n y C20 C19 69G sing 12 n y C13 C8 69G doub 13 n y C13 C14 69G sing 14 n n C8 C7 69G sing 15 n n O15 C14 69G doub 16 n n C14 N5 69G sing 17 n n C7 C16 69G sing 18 n n C7 C6 69G doub 19 n n C16 C17 69G doub 20 n y C19 C18 69G doub 21 n y N5 C6 69G sing 22 n n N5 C4 69G sing 23 n n C17 C18 69G sing 24 n y C4 C3 69G sing 25 n n C3 C2 69G doub 26 e n C2 C1 69G sing 27 n n C4 H1 69G sing 28 n n C4 H2 69G sing 29 n n C6 H3 69G sing 30 n n C9 H4 69G sing 31 n n C10 H5 69G sing 32 n n C3 H6 69G sing 33 n n C1 H7 69G sing 34 n n C1 H8 69G sing 35 n n C1 H9 69G sing 36 n n C2 H10 69G sing 37 n n N11 H12 69G sing 38 n n C17 H11 69G sing 39 n n C18 H13 69G sing 40 n n C19 H14 69G sing 41 n n C21 H15 69G sing 42 n n C25 H16 69G sing 43 n n C25 H17 69G sing 44 n n C25 H18 69G sing 45 n n C26 H19 69G sing 46 n n C26 H20 69G sing 47 n n C26 H21 69G sing 48 n n # _atom_sites.entry_id 5I88 _atom_sites.fract_transf_matrix[1][1] 0.022637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 201 2 PGE 12P . C 3 EDO A 1 202 3 EDO EDO . D 3 EDO A 1 203 4 EDO EDO . E 4 DMS A 1 204 5 DMS DMS . F 5 69G A 1 205 1 69G DRG . G 6 GOL A 1 206 1 GOL GOL . H 7 HOH A 1 301 71 HOH HOH . H 7 HOH A 2 302 85 HOH HOH . H 7 HOH A 3 303 98 HOH HOH . H 7 HOH A 4 304 44 HOH HOH . H 7 HOH A 5 305 15 HOH HOH . H 7 HOH A 6 306 57 HOH HOH . H 7 HOH A 7 307 80 HOH HOH . H 7 HOH A 8 308 100 HOH HOH . H 7 HOH A 9 309 8 HOH HOH . H 7 HOH A 10 310 60 HOH HOH . H 7 HOH A 11 311 123 HOH HOH . H 7 HOH A 12 312 130 HOH HOH . H 7 HOH A 13 313 48 HOH HOH . H 7 HOH A 14 314 43 HOH HOH . H 7 HOH A 15 315 9 HOH HOH . H 7 HOH A 16 316 3 HOH HOH . H 7 HOH A 17 317 67 HOH HOH . H 7 HOH A 18 318 69 HOH HOH . H 7 HOH A 19 319 122 HOH HOH . H 7 HOH A 20 320 63 HOH HOH . H 7 HOH A 21 321 23 HOH HOH . H 7 HOH A 22 322 13 HOH HOH . H 7 HOH A 23 323 22 HOH HOH . H 7 HOH A 24 324 10 HOH HOH . H 7 HOH A 25 325 35 HOH HOH . H 7 HOH A 26 326 4 HOH HOH . H 7 HOH A 27 327 21 HOH HOH . H 7 HOH A 28 328 11 HOH HOH . H 7 HOH A 29 329 5 HOH HOH . H 7 HOH A 30 330 24 HOH HOH . H 7 HOH A 31 331 38 HOH HOH . H 7 HOH A 32 332 1 HOH HOH . H 7 HOH A 33 333 41 HOH HOH . H 7 HOH A 34 334 36 HOH HOH . H 7 HOH A 35 335 117 HOH HOH . H 7 HOH A 36 336 97 HOH HOH . H 7 HOH A 37 337 89 HOH HOH . H 7 HOH A 38 338 6 HOH HOH . H 7 HOH A 39 339 74 HOH HOH . H 7 HOH A 40 340 45 HOH HOH . H 7 HOH A 41 341 55 HOH HOH . H 7 HOH A 42 342 77 HOH HOH . H 7 HOH A 43 343 26 HOH HOH . H 7 HOH A 44 344 33 HOH HOH . H 7 HOH A 45 345 86 HOH HOH . H 7 HOH A 46 346 25 HOH HOH . H 7 HOH A 47 347 46 HOH HOH . H 7 HOH A 48 348 39 HOH HOH . H 7 HOH A 49 349 37 HOH HOH . H 7 HOH A 50 350 2 HOH HOH . H 7 HOH A 51 351 14 HOH HOH . H 7 HOH A 52 352 87 HOH HOH . H 7 HOH A 53 353 34 HOH HOH . H 7 HOH A 54 354 111 HOH HOH . H 7 HOH A 55 355 19 HOH HOH . H 7 HOH A 56 356 72 HOH HOH . H 7 HOH A 57 357 64 HOH HOH . H 7 HOH A 58 358 83 HOH HOH . H 7 HOH A 59 359 121 HOH HOH . H 7 HOH A 60 360 28 HOH HOH . H 7 HOH A 61 361 56 HOH HOH . H 7 HOH A 62 362 68 HOH HOH . H 7 HOH A 63 363 12 HOH HOH . H 7 HOH A 64 364 58 HOH HOH . H 7 HOH A 65 365 29 HOH HOH . H 7 HOH A 66 366 40 HOH HOH . H 7 HOH A 67 367 75 HOH HOH . H 7 HOH A 68 368 107 HOH HOH . H 7 HOH A 69 369 128 HOH HOH . H 7 HOH A 70 370 114 HOH HOH . H 7 HOH A 71 371 47 HOH HOH . H 7 HOH A 72 372 52 HOH HOH . H 7 HOH A 73 373 7 HOH HOH . H 7 HOH A 74 374 109 HOH HOH . H 7 HOH A 75 375 66 HOH HOH . H 7 HOH A 76 376 78 HOH HOH . H 7 HOH A 77 377 70 HOH HOH . H 7 HOH A 78 378 27 HOH HOH . H 7 HOH A 79 379 106 HOH HOH . H 7 HOH A 80 380 62 HOH HOH . H 7 HOH A 81 381 20 HOH HOH . H 7 HOH A 82 382 125 HOH HOH . H 7 HOH A 83 383 105 HOH HOH . H 7 HOH A 84 384 18 HOH HOH . H 7 HOH A 85 385 30 HOH HOH . H 7 HOH A 86 386 82 HOH HOH . H 7 HOH A 87 387 42 HOH HOH . H 7 HOH A 88 388 51 HOH HOH . H 7 HOH A 89 389 32 HOH HOH . H 7 HOH A 90 390 101 HOH HOH . H 7 HOH A 91 391 110 HOH HOH . H 7 HOH A 92 392 16 HOH HOH . H 7 HOH A 93 393 65 HOH HOH . H 7 HOH A 94 394 88 HOH HOH . H 7 HOH A 95 395 99 HOH HOH . H 7 HOH A 96 396 116 HOH HOH . H 7 HOH A 97 397 73 HOH HOH . H 7 HOH A 98 398 79 HOH HOH . H 7 HOH A 99 399 31 HOH HOH . H 7 HOH A 100 400 95 HOH HOH . H 7 HOH A 101 401 108 HOH HOH . H 7 HOH A 102 402 54 HOH HOH . H 7 HOH A 103 403 49 HOH HOH . H 7 HOH A 104 404 81 HOH HOH . H 7 HOH A 105 405 119 HOH HOH . H 7 HOH A 106 406 129 HOH HOH . H 7 HOH A 107 407 50 HOH HOH . H 7 HOH A 108 408 53 HOH HOH . H 7 HOH A 109 409 102 HOH HOH . H 7 HOH A 110 410 90 HOH HOH . H 7 HOH A 111 411 115 HOH HOH . H 7 HOH A 112 412 76 HOH HOH . H 7 HOH A 113 413 113 HOH HOH . H 7 HOH A 114 414 17 HOH HOH . H 7 HOH A 115 415 127 HOH HOH . H 7 HOH A 116 416 126 HOH HOH . H 7 HOH A 117 417 61 HOH HOH . H 7 HOH A 118 418 118 HOH HOH . H 7 HOH A 119 419 92 HOH HOH . H 7 HOH A 120 420 103 HOH HOH . H 7 HOH A 121 421 124 HOH HOH . H 7 HOH A 122 422 91 HOH HOH . H 7 HOH A 123 423 59 HOH HOH . H 7 HOH A 124 424 112 HOH HOH . H 7 HOH A 125 425 96 HOH HOH . H 7 HOH A 126 426 84 HOH HOH . H 7 HOH A 127 427 93 HOH HOH . H 7 HOH A 128 428 120 HOH HOH . H 7 HOH A 129 429 94 HOH HOH . H 7 HOH A 130 430 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 69G . . . F 5 -10.83 -6.411 11.931 1 19.85 ? C4 69G 205 A 1 HETATM 2 C C14 69G . . . F 5 -12.495 -7.124 10.332 1 17.1 ? C14 69G 205 A 1 HETATM 3 C C6 69G . . . F 5 -12.61 -4.909 11.209 1 15.48 ? C6 69G 205 A 1 HETATM 4 C C7 69G . . . F 5 -13.708 -4.599 10.47 1 16.85 ? C7 69G 205 A 1 HETATM 5 C C8 69G . . . F 5 -14.252 -5.625 9.578 1 16.58 ? C8 69G 205 A 1 HETATM 6 C C9 69G . . . F 5 -15.327 -5.677 8.672 1 18.56 ? C9 69G 205 A 1 HETATM 7 C C10 69G . . . F 5 -15.332 -6.904 8.115 1 18.97 ? C10 69G 205 A 1 HETATM 8 C C13 69G . . . F 5 -13.622 -6.877 9.526 1 17 ? C13 69G 205 A 1 HETATM 9 C C3 69G . . . F 5 -11.07 -6.401 13.418 1 16.54 ? C3 69G 205 A 1 HETATM 10 C C1 69G . . . F 5 -10.72 -5.309 15.6 1 18.65 ? C1 69G 205 A 1 HETATM 11 C C2 69G . . . F 5 -10.543 -5.404 14.101 1 16.43 ? C2 69G 205 A 1 HETATM 12 N N5 69G . . . F 5 -12.04 -6.151 11.141 1 17.09 ? N5 69G 205 A 1 HETATM 13 N N11 69G . . . F 5 -14.303 -7.647 8.616 1 18.18 ? N11 69G 205 A 1 HETATM 14 O O15 69G . . . F 5 -11.931 -8.221 10.284 1 19.78 ? O15 69G 205 A 1 HETATM 15 C C16 69G . . . F 5 -14.253 -3.233 10.527 1 17.65 ? C16 69G 205 A 1 HETATM 16 C C17 69G . . . F 5 -14.421 -2.559 11.734 1 16.91 ? C17 69G 205 A 1 HETATM 17 C C18 69G . . . F 5 -14.898 -1.266 11.747 1 20.5 ? C18 69G 205 A 1 HETATM 18 C C19 69G . . . F 5 -15.193 -0.613 10.563 1 23.35 ? C19 69G 205 A 1 HETATM 19 C C20 69G . . . F 5 -15.001 -1.271 9.347 1 27.91 ? C20 69G 205 A 1 HETATM 20 C C21 69G . . . F 5 -14.53 -2.583 9.327 1 20.68 ? C21 69G 205 A 1 HETATM 21 C C22 69G . . . F 5 -15.331 -0.562 8.091 1 24.06 ? C22 69G 205 A 1 HETATM 22 O O23 69G . . . F 5 -16.408 -0.015 8.012 1 27.19 ? O23 69G 205 A 1 HETATM 23 N N24 69G . . . F 5 -14.483 -0.492 7.04 1 29.2 ? N24 69G 205 A 1 HETATM 24 C C25 69G . . . F 5 -14.909 0.237 5.843 1 23.1 ? C25 69G 205 A 1 HETATM 25 C C26 69G . . . F 5 -13.154 -1.107 7.046 1 23.9 ? C26 69G 205 A 1 HETATM 26 H H12 69G . . . F 5 -14.096 -8.564 8.379 1 21.81 ? H12 69G 205 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 26 #