data_5I8F # _model_server_result.job_id 36S9TuPk-4_lrYpFJRWUew _model_server_result.datetime_utc '2024-11-23 11:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 5I8F # _exptl.entry_id 5I8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I8F _cell.length_a 60.86 _cell.length_b 89.639 _cell.length_c 76.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 16 A GLU 10 1_555 I NA NA . A NA 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 A O GLU 17 A GLU 11 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A O VAL 66 A VAL 60 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc4 A O ASP 67 A ASP 61 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc5 A O HIS 69 A HIS 63 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 A O LEU 71 A LEU 65 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 A OE2 GLU 143 A GLU 137 1_555 J NA NA . A NA 209 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc8 A OH TYR 150 A TYR 144 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc9 H NA NA . A NA 207 1_555 O O HOH . A HOH 369 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 H NA NA . A NA 207 1_555 O O HOH . A HOH 369 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.54 ? metalc ? metalc11 H NA NA . A NA 207 1_555 O O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 I NA NA . A NA 208 1_555 O O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc13 I NA NA . A NA 208 1_555 O O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc14 I NA NA . A NA 208 1_555 O O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 J NA NA . A NA 209 1_555 O O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc16 J NA NA . A NA 209 1_555 O O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc17 J NA NA . A NA 209 1_555 O O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5I8F _atom_sites.fract_transf_matrix[1][1] 0.016431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 201 276 UNL UNL . C 2 UNL A 1 202 277 UNL UNL . D 2 UNL A 1 203 278 UNL UNL . E 2 UNL A 1 204 279 UNL UNL . F 2 UNL A 1 205 280 UNL UNL . G 2 UNL A 1 206 284 UNL UNL . H 3 NA A 1 207 1 NA NA . I 3 NA A 1 208 2 NA NA . J 3 NA A 1 209 3 NA NA . K 4 ML1 A 1 210 1 ML1 ML1 . L 4 ML1 A 1 211 1 ML1 ML1 . M 5 GOL A 1 212 1 GOL GOL . N 5 GOL A 1 213 2 GOL GOL . O 6 HOH A 1 301 131 HOH HOH . O 6 HOH A 2 302 143 HOH HOH . O 6 HOH A 3 303 151 HOH HOH . O 6 HOH A 4 304 171 HOH HOH . O 6 HOH A 5 305 158 HOH HOH . O 6 HOH A 6 306 227 HOH HOH . O 6 HOH A 7 307 242 HOH HOH . O 6 HOH A 8 308 28 HOH HOH . O 6 HOH A 9 309 46 HOH HOH . O 6 HOH A 10 310 135 HOH HOH . O 6 HOH A 11 311 146 HOH HOH . O 6 HOH A 12 312 103 HOH HOH . O 6 HOH A 13 313 138 HOH HOH . O 6 HOH A 14 314 13 HOH HOH . O 6 HOH A 15 315 268 HOH HOH . O 6 HOH A 16 316 57 HOH HOH . O 6 HOH A 17 317 61 HOH HOH . O 6 HOH A 18 318 275 HOH HOH . O 6 HOH A 19 319 81 HOH HOH . O 6 HOH A 20 320 79 HOH HOH . O 6 HOH A 21 321 203 HOH HOH . O 6 HOH A 22 322 156 HOH HOH . O 6 HOH A 23 323 119 HOH HOH . O 6 HOH A 24 324 140 HOH HOH . O 6 HOH A 25 325 18 HOH HOH . O 6 HOH A 26 326 199 HOH HOH . O 6 HOH A 27 327 30 HOH HOH . O 6 HOH A 28 328 34 HOH HOH . O 6 HOH A 29 329 78 HOH HOH . O 6 HOH A 30 330 54 HOH HOH . O 6 HOH A 31 331 157 HOH HOH . O 6 HOH A 32 332 154 HOH HOH . O 6 HOH A 33 333 74 HOH HOH . O 6 HOH A 34 334 173 HOH HOH . O 6 HOH A 35 335 45 HOH HOH . O 6 HOH A 36 336 59 HOH HOH . O 6 HOH A 37 337 24 HOH HOH . O 6 HOH A 38 338 219 HOH HOH . O 6 HOH A 39 339 198 HOH HOH . O 6 HOH A 40 340 65 HOH HOH . O 6 HOH A 41 341 2 HOH HOH . O 6 HOH A 42 342 127 HOH HOH . O 6 HOH A 43 343 16 HOH HOH . O 6 HOH A 44 344 271 HOH HOH . O 6 HOH A 45 345 5 HOH HOH . O 6 HOH A 46 346 22 HOH HOH . O 6 HOH A 47 347 68 HOH HOH . O 6 HOH A 48 348 76 HOH HOH . O 6 HOH A 49 349 202 HOH HOH . O 6 HOH A 50 350 19 HOH HOH . O 6 HOH A 51 351 116 HOH HOH . O 6 HOH A 52 352 209 HOH HOH . O 6 HOH A 53 353 80 HOH HOH . O 6 HOH A 54 354 29 HOH HOH . O 6 HOH A 55 355 124 HOH HOH . O 6 HOH A 56 356 104 HOH HOH . O 6 HOH A 57 357 72 HOH HOH . O 6 HOH A 58 358 36 HOH HOH . O 6 HOH A 59 359 196 HOH HOH . O 6 HOH A 60 360 39 HOH HOH . O 6 HOH A 61 361 222 HOH HOH . O 6 HOH A 62 362 176 HOH HOH . O 6 HOH A 63 363 51 HOH HOH . O 6 HOH A 64 364 58 HOH HOH . O 6 HOH A 65 365 205 HOH HOH . O 6 HOH A 66 366 14 HOH HOH . O 6 HOH A 67 367 84 HOH HOH . O 6 HOH A 68 368 15 HOH HOH . O 6 HOH A 69 369 27 HOH HOH . O 6 HOH A 70 370 102 HOH HOH . O 6 HOH A 71 371 73 HOH HOH . O 6 HOH A 72 372 20 HOH HOH . O 6 HOH A 73 373 9 HOH HOH . O 6 HOH A 74 374 6 HOH HOH . O 6 HOH A 75 375 47 HOH HOH . O 6 HOH A 76 376 10 HOH HOH . O 6 HOH A 77 377 148 HOH HOH . O 6 HOH A 78 378 53 HOH HOH . O 6 HOH A 79 379 70 HOH HOH . O 6 HOH A 80 380 4 HOH HOH . O 6 HOH A 81 381 120 HOH HOH . O 6 HOH A 82 382 69 HOH HOH . O 6 HOH A 83 383 12 HOH HOH . O 6 HOH A 84 384 71 HOH HOH . O 6 HOH A 85 385 88 HOH HOH . O 6 HOH A 86 386 23 HOH HOH . O 6 HOH A 87 387 200 HOH HOH . O 6 HOH A 88 388 52 HOH HOH . O 6 HOH A 89 389 110 HOH HOH . O 6 HOH A 90 390 35 HOH HOH . O 6 HOH A 91 391 91 HOH HOH . O 6 HOH A 92 392 252 HOH HOH . O 6 HOH A 93 393 267 HOH HOH . O 6 HOH A 94 394 93 HOH HOH . O 6 HOH A 95 395 125 HOH HOH . O 6 HOH A 96 396 145 HOH HOH . O 6 HOH A 97 397 142 HOH HOH . O 6 HOH A 98 398 50 HOH HOH . O 6 HOH A 99 399 87 HOH HOH . O 6 HOH A 100 400 161 HOH HOH . O 6 HOH A 101 401 170 HOH HOH . O 6 HOH A 102 402 239 HOH HOH . O 6 HOH A 103 403 94 HOH HOH . O 6 HOH A 104 404 235 HOH HOH . O 6 HOH A 105 405 32 HOH HOH . O 6 HOH A 106 406 56 HOH HOH . O 6 HOH A 107 407 194 HOH HOH . O 6 HOH A 108 408 141 HOH HOH . O 6 HOH A 109 409 130 HOH HOH . O 6 HOH A 110 410 42 HOH HOH . O 6 HOH A 111 411 224 HOH HOH . O 6 HOH A 112 412 183 HOH HOH . O 6 HOH A 113 413 37 HOH HOH . O 6 HOH A 114 414 48 HOH HOH . O 6 HOH A 115 415 147 HOH HOH . O 6 HOH A 116 416 191 HOH HOH . O 6 HOH A 117 417 33 HOH HOH . O 6 HOH A 118 418 41 HOH HOH . O 6 HOH A 119 419 96 HOH HOH . O 6 HOH A 120 420 118 HOH HOH . O 6 HOH A 121 421 234 HOH HOH . O 6 HOH A 122 422 197 HOH HOH . O 6 HOH A 123 423 166 HOH HOH . O 6 HOH A 124 424 43 HOH HOH . O 6 HOH A 125 425 21 HOH HOH . O 6 HOH A 126 426 164 HOH HOH . O 6 HOH A 127 427 92 HOH HOH . O 6 HOH A 128 428 1 HOH HOH . O 6 HOH A 129 429 108 HOH HOH . O 6 HOH A 130 430 179 HOH HOH . O 6 HOH A 131 431 229 HOH HOH . O 6 HOH A 132 432 192 HOH HOH . O 6 HOH A 133 433 181 HOH HOH . O 6 HOH A 134 434 40 HOH HOH . O 6 HOH A 135 435 144 HOH HOH . O 6 HOH A 136 436 185 HOH HOH . O 6 HOH A 137 437 25 HOH HOH . O 6 HOH A 138 438 201 HOH HOH . O 6 HOH A 139 439 60 HOH HOH . O 6 HOH A 140 440 187 HOH HOH . O 6 HOH A 141 441 11 HOH HOH . O 6 HOH A 142 442 162 HOH HOH . O 6 HOH A 143 443 212 HOH HOH . O 6 HOH A 144 444 216 HOH HOH . O 6 HOH A 145 445 63 HOH HOH . O 6 HOH A 146 446 31 HOH HOH . O 6 HOH A 147 447 67 HOH HOH . O 6 HOH A 148 448 49 HOH HOH . O 6 HOH A 149 449 186 HOH HOH . O 6 HOH A 150 450 155 HOH HOH . O 6 HOH A 151 451 211 HOH HOH . O 6 HOH A 152 452 270 HOH HOH . O 6 HOH A 153 453 204 HOH HOH . O 6 HOH A 154 454 265 HOH HOH . O 6 HOH A 155 455 26 HOH HOH . O 6 HOH A 156 456 210 HOH HOH . O 6 HOH A 157 457 44 HOH HOH . O 6 HOH A 158 458 169 HOH HOH . O 6 HOH A 159 459 190 HOH HOH . O 6 HOH A 160 460 150 HOH HOH . O 6 HOH A 161 461 175 HOH HOH . O 6 HOH A 162 462 165 HOH HOH . O 6 HOH A 163 463 132 HOH HOH . O 6 HOH A 164 464 180 HOH HOH . O 6 HOH A 165 465 160 HOH HOH . O 6 HOH A 166 466 228 HOH HOH . O 6 HOH A 167 467 17 HOH HOH . O 6 HOH A 168 468 95 HOH HOH . O 6 HOH A 169 469 241 HOH HOH . O 6 HOH A 170 470 3 HOH HOH . O 6 HOH A 171 471 62 HOH HOH . O 6 HOH A 172 472 285 HOH HOH . O 6 HOH A 173 473 167 HOH HOH . O 6 HOH A 174 474 246 HOH HOH . O 6 HOH A 175 475 238 HOH HOH . O 6 HOH A 176 476 274 HOH HOH . O 6 HOH A 177 477 286 HOH HOH . O 6 HOH A 178 478 111 HOH HOH . O 6 HOH A 179 479 178 HOH HOH . O 6 HOH A 180 480 90 HOH HOH . O 6 HOH A 181 481 89 HOH HOH . O 6 HOH A 182 482 168 HOH HOH . O 6 HOH A 183 483 184 HOH HOH . O 6 HOH A 184 484 251 HOH HOH . O 6 HOH A 185 485 172 HOH HOH . O 6 HOH A 186 486 122 HOH HOH . O 6 HOH A 187 487 236 HOH HOH . O 6 HOH A 188 488 75 HOH HOH . O 6 HOH A 189 489 55 HOH HOH . O 6 HOH A 190 490 233 HOH HOH . O 6 HOH A 191 491 248 HOH HOH . O 6 HOH A 192 492 182 HOH HOH . O 6 HOH A 193 493 208 HOH HOH . O 6 HOH A 194 494 137 HOH HOH . O 6 HOH A 195 495 66 HOH HOH . O 6 HOH A 196 496 112 HOH HOH . O 6 HOH A 197 497 206 HOH HOH . O 6 HOH A 198 498 82 HOH HOH . O 6 HOH A 199 499 188 HOH HOH . O 6 HOH A 200 500 256 HOH HOH . O 6 HOH A 201 501 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.124 _atom_site.Cartn_y 14.696 _atom_site.Cartn_z 5.401 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 39.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 209 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #