data_5I8G # _model_server_result.job_id 3ISOA-pM91fdko2KAxOifg _model_server_result.datetime_utc '2024-10-12 14:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1407}' # _entry.id 5I8G # _exptl.entry_id 5I8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.71 _cell.angle_gamma 90 _cell.entry_id 5I8G _cell.length_a 92.11 _cell.length_b 60.06 _cell.length_c 54.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 151 A CYS 1199 1_555 B ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 152 A CYS 1200 1_555 B ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A SG CYS 165 A CYS 1213 1_555 D ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 A SG CYS 171 A CYS 1219 1_555 D ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc5 A SG CYS 189 A CYS 1237 1_555 D ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 A SG CYS 192 A CYS 1240 1_555 D ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 A SG CYS 235 A CYS 1283 1_555 C ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A SG CYS 238 A CYS 1286 1_555 C ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc9 A ND1 HIS 243 A HIS 1291 1_555 B ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 A SG CYS 246 A CYS 1294 1_555 B ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc11 A SG CYS 260 A CYS 1308 1_555 C ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 A SG CYS 263 A CYS 1311 1_555 C ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 182 n n C1 C2 EDO sing 183 n n C1 H11 EDO sing 184 n n C1 H12 EDO sing 185 n n O1 HO1 EDO sing 186 n n C2 O2 EDO sing 187 n n C2 H21 EDO sing 188 n n C2 H22 EDO sing 189 n n O2 HO2 EDO sing 190 n n # _atom_sites.entry_id 5I8G _atom_sites.fract_transf_matrix[1][1] 0.010857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002449 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1401 1401 ZN ZN . C 2 ZN A 1 1402 1402 ZN ZN . D 2 ZN A 1 1403 1403 ZN ZN . E 3 69E A 1 1404 1 69E DRG . F 4 B3P A 1 1405 1 B3P B3P . G 5 EDO A 1 1406 2 EDO EDO . H 5 EDO A 1 1407 3 EDO EDO . I 5 EDO A 1 1408 4 EDO EDO . J 5 EDO A 1 1409 5 EDO EDO . K 5 EDO A 1 1410 6 EDO EDO . L 6 NA A 1 1411 9 NA NA . M 7 PEG A 1 1412 7 PEG PEG . N 7 PEG A 1 1413 8 PEG PEG . O 8 HOH A 1 1501 178 HOH HOH . O 8 HOH A 2 1502 137 HOH HOH . O 8 HOH A 3 1503 147 HOH HOH . O 8 HOH A 4 1504 61 HOH HOH . O 8 HOH A 5 1505 105 HOH HOH . O 8 HOH A 6 1506 159 HOH HOH . O 8 HOH A 7 1507 133 HOH HOH . O 8 HOH A 8 1508 162 HOH HOH . O 8 HOH A 9 1509 199 HOH HOH . O 8 HOH A 10 1510 161 HOH HOH . O 8 HOH A 11 1511 160 HOH HOH . O 8 HOH A 12 1512 55 HOH HOH . O 8 HOH A 13 1513 200 HOH HOH . O 8 HOH A 14 1514 196 HOH HOH . O 8 HOH A 15 1515 163 HOH HOH . O 8 HOH A 16 1516 201 HOH HOH . O 8 HOH A 17 1517 134 HOH HOH . O 8 HOH A 18 1518 38 HOH HOH . O 8 HOH A 19 1519 56 HOH HOH . O 8 HOH A 20 1520 115 HOH HOH . O 8 HOH A 21 1521 195 HOH HOH . O 8 HOH A 22 1522 99 HOH HOH . O 8 HOH A 23 1523 207 HOH HOH . O 8 HOH A 24 1524 106 HOH HOH . O 8 HOH A 25 1525 33 HOH HOH . O 8 HOH A 26 1526 194 HOH HOH . O 8 HOH A 27 1527 58 HOH HOH . O 8 HOH A 28 1528 24 HOH HOH . O 8 HOH A 29 1529 118 HOH HOH . O 8 HOH A 30 1530 212 HOH HOH . O 8 HOH A 31 1531 40 HOH HOH . O 8 HOH A 32 1532 203 HOH HOH . O 8 HOH A 33 1533 27 HOH HOH . O 8 HOH A 34 1534 1 HOH HOH . O 8 HOH A 35 1535 46 HOH HOH . O 8 HOH A 36 1536 208 HOH HOH . O 8 HOH A 37 1537 23 HOH HOH . O 8 HOH A 38 1538 69 HOH HOH . O 8 HOH A 39 1539 13 HOH HOH . O 8 HOH A 40 1540 4 HOH HOH . O 8 HOH A 41 1541 144 HOH HOH . O 8 HOH A 42 1542 79 HOH HOH . O 8 HOH A 43 1543 153 HOH HOH . O 8 HOH A 44 1544 142 HOH HOH . O 8 HOH A 45 1545 156 HOH HOH . O 8 HOH A 46 1546 37 HOH HOH . O 8 HOH A 47 1547 16 HOH HOH . O 8 HOH A 48 1548 155 HOH HOH . O 8 HOH A 49 1549 28 HOH HOH . O 8 HOH A 50 1550 192 HOH HOH . O 8 HOH A 51 1551 2 HOH HOH . O 8 HOH A 52 1552 96 HOH HOH . O 8 HOH A 53 1553 50 HOH HOH . O 8 HOH A 54 1554 22 HOH HOH . O 8 HOH A 55 1555 30 HOH HOH . O 8 HOH A 56 1556 84 HOH HOH . O 8 HOH A 57 1557 117 HOH HOH . O 8 HOH A 58 1558 97 HOH HOH . O 8 HOH A 59 1559 12 HOH HOH . O 8 HOH A 60 1560 25 HOH HOH . O 8 HOH A 61 1561 88 HOH HOH . O 8 HOH A 62 1562 141 HOH HOH . O 8 HOH A 63 1563 182 HOH HOH . O 8 HOH A 64 1564 42 HOH HOH . O 8 HOH A 65 1565 8 HOH HOH . O 8 HOH A 66 1566 15 HOH HOH . O 8 HOH A 67 1567 59 HOH HOH . O 8 HOH A 68 1568 20 HOH HOH . O 8 HOH A 69 1569 116 HOH HOH . O 8 HOH A 70 1570 21 HOH HOH . O 8 HOH A 71 1571 211 HOH HOH . O 8 HOH A 72 1572 94 HOH HOH . O 8 HOH A 73 1573 132 HOH HOH . O 8 HOH A 74 1574 48 HOH HOH . O 8 HOH A 75 1575 86 HOH HOH . O 8 HOH A 76 1576 57 HOH HOH . O 8 HOH A 77 1577 131 HOH HOH . O 8 HOH A 78 1578 72 HOH HOH . O 8 HOH A 79 1579 135 HOH HOH . O 8 HOH A 80 1580 49 HOH HOH . O 8 HOH A 81 1581 18 HOH HOH . O 8 HOH A 82 1582 76 HOH HOH . O 8 HOH A 83 1583 75 HOH HOH . O 8 HOH A 84 1584 143 HOH HOH . O 8 HOH A 85 1585 167 HOH HOH . O 8 HOH A 86 1586 54 HOH HOH . O 8 HOH A 87 1587 3 HOH HOH . O 8 HOH A 88 1588 44 HOH HOH . O 8 HOH A 89 1589 110 HOH HOH . O 8 HOH A 90 1590 47 HOH HOH . O 8 HOH A 91 1591 166 HOH HOH . O 8 HOH A 92 1592 189 HOH HOH . O 8 HOH A 93 1593 103 HOH HOH . O 8 HOH A 94 1594 29 HOH HOH . O 8 HOH A 95 1595 73 HOH HOH . O 8 HOH A 96 1596 114 HOH HOH . O 8 HOH A 97 1597 176 HOH HOH . O 8 HOH A 98 1598 108 HOH HOH . O 8 HOH A 99 1599 126 HOH HOH . O 8 HOH A 100 1600 190 HOH HOH . O 8 HOH A 101 1601 9 HOH HOH . O 8 HOH A 102 1602 171 HOH HOH . O 8 HOH A 103 1603 111 HOH HOH . O 8 HOH A 104 1604 198 HOH HOH . O 8 HOH A 105 1605 83 HOH HOH . O 8 HOH A 106 1606 65 HOH HOH . O 8 HOH A 107 1607 5 HOH HOH . O 8 HOH A 108 1608 51 HOH HOH . O 8 HOH A 109 1609 174 HOH HOH . O 8 HOH A 110 1610 150 HOH HOH . O 8 HOH A 111 1611 14 HOH HOH . O 8 HOH A 112 1612 139 HOH HOH . O 8 HOH A 113 1613 74 HOH HOH . O 8 HOH A 114 1614 70 HOH HOH . O 8 HOH A 115 1615 7 HOH HOH . O 8 HOH A 116 1616 87 HOH HOH . O 8 HOH A 117 1617 6 HOH HOH . O 8 HOH A 118 1618 19 HOH HOH . O 8 HOH A 119 1619 187 HOH HOH . O 8 HOH A 120 1620 71 HOH HOH . O 8 HOH A 121 1621 120 HOH HOH . O 8 HOH A 122 1622 39 HOH HOH . O 8 HOH A 123 1623 17 HOH HOH . O 8 HOH A 124 1624 180 HOH HOH . O 8 HOH A 125 1625 35 HOH HOH . O 8 HOH A 126 1626 123 HOH HOH . O 8 HOH A 127 1627 53 HOH HOH . O 8 HOH A 128 1628 43 HOH HOH . O 8 HOH A 129 1629 109 HOH HOH . O 8 HOH A 130 1630 112 HOH HOH . O 8 HOH A 131 1631 52 HOH HOH . O 8 HOH A 132 1632 95 HOH HOH . O 8 HOH A 133 1633 32 HOH HOH . O 8 HOH A 134 1634 209 HOH HOH . O 8 HOH A 135 1635 149 HOH HOH . O 8 HOH A 136 1636 10 HOH HOH . O 8 HOH A 137 1637 128 HOH HOH . O 8 HOH A 138 1638 102 HOH HOH . O 8 HOH A 139 1639 170 HOH HOH . O 8 HOH A 140 1640 34 HOH HOH . O 8 HOH A 141 1641 82 HOH HOH . O 8 HOH A 142 1642 140 HOH HOH . O 8 HOH A 143 1643 31 HOH HOH . O 8 HOH A 144 1644 11 HOH HOH . O 8 HOH A 145 1645 152 HOH HOH . O 8 HOH A 146 1646 85 HOH HOH . O 8 HOH A 147 1647 127 HOH HOH . O 8 HOH A 148 1648 26 HOH HOH . O 8 HOH A 149 1649 81 HOH HOH . O 8 HOH A 150 1650 36 HOH HOH . O 8 HOH A 151 1651 60 HOH HOH . O 8 HOH A 152 1652 164 HOH HOH . O 8 HOH A 153 1653 193 HOH HOH . O 8 HOH A 154 1654 136 HOH HOH . O 8 HOH A 155 1655 165 HOH HOH . O 8 HOH A 156 1656 66 HOH HOH . O 8 HOH A 157 1657 64 HOH HOH . O 8 HOH A 158 1658 98 HOH HOH . O 8 HOH A 159 1659 62 HOH HOH . O 8 HOH A 160 1660 184 HOH HOH . O 8 HOH A 161 1661 125 HOH HOH . O 8 HOH A 162 1662 90 HOH HOH . O 8 HOH A 163 1663 92 HOH HOH . O 8 HOH A 164 1664 185 HOH HOH . O 8 HOH A 165 1665 113 HOH HOH . O 8 HOH A 166 1666 206 HOH HOH . O 8 HOH A 167 1667 146 HOH HOH . O 8 HOH A 168 1668 63 HOH HOH . O 8 HOH A 169 1669 89 HOH HOH . O 8 HOH A 170 1670 191 HOH HOH . O 8 HOH A 171 1671 169 HOH HOH . O 8 HOH A 172 1672 197 HOH HOH . O 8 HOH A 173 1673 77 HOH HOH . O 8 HOH A 174 1674 130 HOH HOH . O 8 HOH A 175 1675 119 HOH HOH . O 8 HOH A 176 1676 129 HOH HOH . O 8 HOH A 177 1677 67 HOH HOH . O 8 HOH A 178 1678 205 HOH HOH . O 8 HOH A 179 1679 154 HOH HOH . O 8 HOH A 180 1680 210 HOH HOH . O 8 HOH A 181 1681 145 HOH HOH . O 8 HOH A 182 1682 172 HOH HOH . O 8 HOH A 183 1683 188 HOH HOH . O 8 HOH A 184 1684 186 HOH HOH . O 8 HOH A 185 1685 173 HOH HOH . O 8 HOH A 186 1686 168 HOH HOH . O 8 HOH A 187 1687 183 HOH HOH . O 8 HOH A 188 1688 175 HOH HOH . O 8 HOH A 189 1689 101 HOH HOH . O 8 HOH A 190 1690 181 HOH HOH . O 8 HOH A 191 1691 157 HOH HOH . O 8 HOH A 192 1692 179 HOH HOH . O 8 HOH A 193 1693 158 HOH HOH . O 8 HOH A 194 1694 107 HOH HOH . O 8 HOH A 195 1695 122 HOH HOH . O 8 HOH A 196 1696 68 HOH HOH . O 8 HOH A 197 1697 213 HOH HOH . O 8 HOH A 198 1698 93 HOH HOH . O 8 HOH A 199 1699 41 HOH HOH . O 8 HOH A 200 1700 45 HOH HOH . O 8 HOH A 201 1701 91 HOH HOH . O 8 HOH A 202 1702 202 HOH HOH . O 8 HOH A 203 1703 80 HOH HOH . O 8 HOH A 204 1704 121 HOH HOH . O 8 HOH A 205 1705 138 HOH HOH . O 8 HOH A 206 1706 151 HOH HOH . O 8 HOH A 207 1707 148 HOH HOH . O 8 HOH A 208 1708 78 HOH HOH . O 8 HOH A 209 1709 204 HOH HOH . O 8 HOH A 210 1710 100 HOH HOH . O 8 HOH A 211 1711 124 HOH HOH . O 8 HOH A 212 1712 104 HOH HOH . O 8 HOH A 213 1713 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 23.331 2.458 1.888 1 45.05 ? C1 EDO 1407 A 1 HETATM 2 O O1 EDO . . . H 5 23.299 3.802 2.383 1 45.58 ? O1 EDO 1407 A 1 HETATM 3 C C2 EDO . . . H 5 24.656 2.234 1.17 1 48.32 ? C2 EDO 1407 A 1 HETATM 4 O O2 EDO . . . H 5 25.722 2.477 2.095 1 45.01 ? O2 EDO 1407 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #