data_5I8P # _model_server_result.job_id 5OlIAucfkkTJb02gypVRkw _model_server_result.datetime_utc '2025-01-10 18:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5I8P # _exptl.entry_id 5I8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 579.924 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]-4-[[4-[4-chloranyl-3-(trifluoromethyl)phenoxy]-3,5-bis(fluoranyl)phenyl]methoxy]-1-methyl-pyrimidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.44 _cell.angle_gamma 90 _cell.entry_id 5I8P _cell.length_a 115.82 _cell.length_b 82.75 _cell.length_c 96.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H19 Cl F5 N3 O5 S' _chem_comp.formula_weight 579.924 _chem_comp.id VQ7 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]-4-[[4-[4-chloranyl-3-(trifluoromethyl)phenoxy]-3,5-bis(fluoranyl)phenyl]methoxy]-1-methyl-pyrimidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 VQ7 sing 376 n n C3 S VQ7 sing 377 n n O1 S VQ7 doub 378 n n C2 N1 VQ7 sing 379 n n S O VQ7 doub 380 n n S C4 VQ7 sing 381 n n C N VQ7 sing 382 n n N1 C1 VQ7 sing 383 n n N1 C5 VQ7 sing 384 n n N C1 VQ7 sing 385 n n N C22 VQ7 sing 386 n n C1 C6 VQ7 doub 387 n n O4 C22 VQ7 doub 388 n n C22 N2 VQ7 sing 389 n n C5 C4 VQ7 sing 390 n n C6 C7 VQ7 sing 391 n n N2 C7 VQ7 doub 392 n n C7 O2 VQ7 sing 393 n n O2 C8 VQ7 sing 394 n n C8 C9 VQ7 sing 395 n n C21 C9 VQ7 doub 396 n y C21 C20 VQ7 sing 397 n y C9 C10 VQ7 sing 398 n y F4 C20 VQ7 sing 399 n n C20 C12 VQ7 doub 400 n y C10 C11 VQ7 doub 401 n y C12 C11 VQ7 sing 402 n y C12 O3 VQ7 sing 403 n n C14 C15 VQ7 doub 404 n y C14 C13 VQ7 sing 405 n y C15 C16 VQ7 sing 406 n y C11 F VQ7 sing 407 n n O3 C13 VQ7 sing 408 n n C13 C19 VQ7 doub 409 n y C16 CL VQ7 sing 410 n n C16 C17 VQ7 doub 411 n y C19 C17 VQ7 sing 412 n y C17 C18 VQ7 sing 413 n n F2 C18 VQ7 sing 414 n n C18 F3 VQ7 sing 415 n n C18 F1 VQ7 sing 416 n n C H1 VQ7 sing 417 n n C H2 VQ7 sing 418 n n C H3 VQ7 sing 419 n n C6 H4 VQ7 sing 420 n n C5 H5 VQ7 sing 421 n n C5 H6 VQ7 sing 422 n n C4 H7 VQ7 sing 423 n n C4 H8 VQ7 sing 424 n n C3 H9 VQ7 sing 425 n n C3 H10 VQ7 sing 426 n n C2 H11 VQ7 sing 427 n n C2 H12 VQ7 sing 428 n n C8 H13 VQ7 sing 429 n n C8 H14 VQ7 sing 430 n n C21 H15 VQ7 sing 431 n n C10 H16 VQ7 sing 432 n n C19 H17 VQ7 sing 433 n n C15 H18 VQ7 sing 434 n n C14 H19 VQ7 sing 435 n n # _atom_sites.entry_id 5I8P _atom_sites.fract_transf_matrix[1][1] 0.008634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VQ7 A 1 501 1 VQ7 VQ7 . D 2 VQ7 B 1 501 1 VQ7 VQ7 . E 3 HOH A 1 601 24 HOH HOH . E 3 HOH A 2 602 1 HOH HOH . E 3 HOH A 3 603 7 HOH HOH . E 3 HOH A 4 604 10 HOH HOH . E 3 HOH A 5 605 22 HOH HOH . E 3 HOH A 6 606 13 HOH HOH . E 3 HOH A 7 607 35 HOH HOH . E 3 HOH A 8 608 3 HOH HOH . E 3 HOH A 9 609 21 HOH HOH . E 3 HOH A 10 610 2 HOH HOH . E 3 HOH A 11 611 11 HOH HOH . E 3 HOH A 12 612 14 HOH HOH . E 3 HOH A 13 613 6 HOH HOH . E 3 HOH A 14 614 26 HOH HOH . E 3 HOH A 15 615 15 HOH HOH . E 3 HOH A 16 616 16 HOH HOH . E 3 HOH A 17 617 19 HOH HOH . E 3 HOH A 18 618 25 HOH HOH . F 3 HOH B 1 601 4 HOH HOH . F 3 HOH B 2 602 8 HOH HOH . F 3 HOH B 3 603 12 HOH HOH . F 3 HOH B 4 604 5 HOH HOH . F 3 HOH B 5 605 38 HOH HOH . F 3 HOH B 6 606 18 HOH HOH . F 3 HOH B 7 607 9 HOH HOH . F 3 HOH B 8 608 17 HOH HOH . F 3 HOH B 9 609 20 HOH HOH . F 3 HOH B 10 610 29 HOH HOH . F 3 HOH B 11 611 40 HOH HOH . F 3 HOH B 12 612 23 HOH HOH . F 3 HOH B 13 613 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 VQ7 . . . C 2 121.861 31.301 24.803 1 29.2 ? O4 VQ7 501 A 1 HETATM 2 C C22 VQ7 . . . C 2 123.104 31.191 24.904 1 30.67 ? C22 VQ7 501 A 1 HETATM 3 N N VQ7 . . . C 2 123.647 30.021 24.567 1 37.09 ? N VQ7 501 A 1 HETATM 4 C C VQ7 . . . C 2 122.606 29.061 24.154 1 33.43 ? C VQ7 501 A 1 HETATM 5 N N2 VQ7 . . . C 2 123.833 32.235 25.334 1 31.63 ? N2 VQ7 501 A 1 HETATM 6 C C7 VQ7 . . . C 2 125.166 32.118 25.433 1 33.89 ? C7 VQ7 501 A 1 HETATM 7 C C6 VQ7 . . . C 2 125.771 30.903 25.1 1 32.5 ? C6 VQ7 501 A 1 HETATM 8 C C1 VQ7 . . . C 2 125.002 29.815 24.652 1 34.74 ? C1 VQ7 501 A 1 HETATM 9 N N1 VQ7 . . . C 2 125.702 28.61 24.32 1 36.6 ? N1 VQ7 501 A 1 HETATM 10 C C5 VQ7 . . . C 2 126.998 28.363 24.962 1 37.53 ? C5 VQ7 501 A 1 HETATM 11 C C4 VQ7 . . . C 2 127.197 26.844 25.091 1 42.08 ? C4 VQ7 501 A 1 HETATM 12 S S VQ7 . . . C 2 127.232 26.066 23.612 1 52.78 ? S VQ7 501 A 1 HETATM 13 O O VQ7 . . . C 2 126.738 24.718 23.711 1 52.15 ? O VQ7 501 A 1 HETATM 14 O O1 VQ7 . . . C 2 128.564 26.05 23.089 1 60.94 ? O1 VQ7 501 A 1 HETATM 15 C C3 VQ7 . . . C 2 126.288 26.926 22.568 1 43.62 ? C3 VQ7 501 A 1 HETATM 16 C C2 VQ7 . . . C 2 125.189 27.612 23.364 1 31.94 ? C2 VQ7 501 A 1 HETATM 17 O O2 VQ7 . . . C 2 125.859 33.217 25.88 1 40.04 ? O2 VQ7 501 A 1 HETATM 18 C C8 VQ7 . . . C 2 125.146 34.344 26.433 1 27.78 ? C8 VQ7 501 A 1 HETATM 19 C C9 VQ7 . . . C 2 126.027 34.985 27.486 1 32.05 ? C9 VQ7 501 A 1 HETATM 20 C C21 VQ7 . . . C 2 126.493 36.289 27.315 1 31.12 ? C21 VQ7 501 A 1 HETATM 21 C C20 VQ7 . . . C 2 127.313 36.873 28.279 1 29.87 ? C20 VQ7 501 A 1 HETATM 22 F F4 VQ7 . . . C 2 127.77 38.127 28.104 1 34.52 ? F4 VQ7 501 A 1 HETATM 23 C C12 VQ7 . . . C 2 127.663 36.166 29.421 1 34.82 ? C12 VQ7 501 A 1 HETATM 24 C C11 VQ7 . . . C 2 127.207 34.868 29.592 1 33.12 ? C11 VQ7 501 A 1 HETATM 25 F F VQ7 . . . C 2 127.59 34.219 30.719 1 34.17 ? F VQ7 501 A 1 HETATM 26 C C10 VQ7 . . . C 2 126.392 34.273 28.626 1 24.67 ? C10 VQ7 501 A 1 HETATM 27 O O3 VQ7 . . . C 2 128.497 36.706 30.381 1 34.04 ? O3 VQ7 501 A 1 HETATM 28 C C13 VQ7 . . . C 2 129.791 36.197 30.428 1 38.28 ? C13 VQ7 501 A 1 HETATM 29 C C19 VQ7 . . . C 2 130.689 36.548 31.435 1 32.51 ? C19 VQ7 501 A 1 HETATM 30 C C17 VQ7 . . . C 2 131.981 36.019 31.445 1 40 ? C17 VQ7 501 A 1 HETATM 31 C C18 VQ7 . . . C 2 132.958 36.402 32.533 1 47.73 ? C18 VQ7 501 A 1 HETATM 32 F F3 VQ7 . . . C 2 133.889 35.469 32.664 1 48.69 ? F3 VQ7 501 A 1 HETATM 33 F F2 VQ7 . . . C 2 133.565 37.54 32.246 1 48.51 ? F2 VQ7 501 A 1 HETATM 34 F F1 VQ7 . . . C 2 132.299 36.538 33.671 1 49.33 ? F1 VQ7 501 A 1 HETATM 35 C C16 VQ7 . . . C 2 132.372 35.128 30.456 1 47.57 ? C16 VQ7 501 A 1 HETATM 36 CL CL VQ7 . . . C 2 134.034 34.444 30.471 1 55.51 ? CL VQ7 501 A 1 HETATM 37 C C15 VQ7 . . . C 2 131.485 34.762 29.447 1 37.73 ? C15 VQ7 501 A 1 HETATM 38 C C14 VQ7 . . . C 2 130.211 35.306 29.436 1 35.22 ? C14 VQ7 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #