data_5I8P # _model_server_result.job_id e4UkwF0YzDRI4TPtN3vdiw _model_server_result.datetime_utc '2025-01-10 18:27:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5I8P # _exptl.entry_id 5I8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 579.924 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]-4-[[4-[4-chloranyl-3-(trifluoromethyl)phenoxy]-3,5-bis(fluoranyl)phenyl]methoxy]-1-methyl-pyrimidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.44 _cell.angle_gamma 90 _cell.entry_id 5I8P _cell.length_a 115.82 _cell.length_b 82.75 _cell.length_c 96.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H19 Cl F5 N3 O5 S' _chem_comp.formula_weight 579.924 _chem_comp.id VQ7 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]-4-[[4-[4-chloranyl-3-(trifluoromethyl)phenoxy]-3,5-bis(fluoranyl)phenyl]methoxy]-1-methyl-pyrimidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 VQ7 sing 376 n n C3 S VQ7 sing 377 n n O1 S VQ7 doub 378 n n C2 N1 VQ7 sing 379 n n S O VQ7 doub 380 n n S C4 VQ7 sing 381 n n C N VQ7 sing 382 n n N1 C1 VQ7 sing 383 n n N1 C5 VQ7 sing 384 n n N C1 VQ7 sing 385 n n N C22 VQ7 sing 386 n n C1 C6 VQ7 doub 387 n n O4 C22 VQ7 doub 388 n n C22 N2 VQ7 sing 389 n n C5 C4 VQ7 sing 390 n n C6 C7 VQ7 sing 391 n n N2 C7 VQ7 doub 392 n n C7 O2 VQ7 sing 393 n n O2 C8 VQ7 sing 394 n n C8 C9 VQ7 sing 395 n n C21 C9 VQ7 doub 396 n y C21 C20 VQ7 sing 397 n y C9 C10 VQ7 sing 398 n y F4 C20 VQ7 sing 399 n n C20 C12 VQ7 doub 400 n y C10 C11 VQ7 doub 401 n y C12 C11 VQ7 sing 402 n y C12 O3 VQ7 sing 403 n n C14 C15 VQ7 doub 404 n y C14 C13 VQ7 sing 405 n y C15 C16 VQ7 sing 406 n y C11 F VQ7 sing 407 n n O3 C13 VQ7 sing 408 n n C13 C19 VQ7 doub 409 n y C16 CL VQ7 sing 410 n n C16 C17 VQ7 doub 411 n y C19 C17 VQ7 sing 412 n y C17 C18 VQ7 sing 413 n n F2 C18 VQ7 sing 414 n n C18 F3 VQ7 sing 415 n n C18 F1 VQ7 sing 416 n n C H1 VQ7 sing 417 n n C H2 VQ7 sing 418 n n C H3 VQ7 sing 419 n n C6 H4 VQ7 sing 420 n n C5 H5 VQ7 sing 421 n n C5 H6 VQ7 sing 422 n n C4 H7 VQ7 sing 423 n n C4 H8 VQ7 sing 424 n n C3 H9 VQ7 sing 425 n n C3 H10 VQ7 sing 426 n n C2 H11 VQ7 sing 427 n n C2 H12 VQ7 sing 428 n n C8 H13 VQ7 sing 429 n n C8 H14 VQ7 sing 430 n n C21 H15 VQ7 sing 431 n n C10 H16 VQ7 sing 432 n n C19 H17 VQ7 sing 433 n n C15 H18 VQ7 sing 434 n n C14 H19 VQ7 sing 435 n n # _atom_sites.entry_id 5I8P _atom_sites.fract_transf_matrix[1][1] 0.008634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VQ7 A 1 501 1 VQ7 VQ7 . D 2 VQ7 B 1 501 1 VQ7 VQ7 . E 3 HOH A 1 601 24 HOH HOH . E 3 HOH A 2 602 1 HOH HOH . E 3 HOH A 3 603 7 HOH HOH . E 3 HOH A 4 604 10 HOH HOH . E 3 HOH A 5 605 22 HOH HOH . E 3 HOH A 6 606 13 HOH HOH . E 3 HOH A 7 607 35 HOH HOH . E 3 HOH A 8 608 3 HOH HOH . E 3 HOH A 9 609 21 HOH HOH . E 3 HOH A 10 610 2 HOH HOH . E 3 HOH A 11 611 11 HOH HOH . E 3 HOH A 12 612 14 HOH HOH . E 3 HOH A 13 613 6 HOH HOH . E 3 HOH A 14 614 26 HOH HOH . E 3 HOH A 15 615 15 HOH HOH . E 3 HOH A 16 616 16 HOH HOH . E 3 HOH A 17 617 19 HOH HOH . E 3 HOH A 18 618 25 HOH HOH . F 3 HOH B 1 601 4 HOH HOH . F 3 HOH B 2 602 8 HOH HOH . F 3 HOH B 3 603 12 HOH HOH . F 3 HOH B 4 604 5 HOH HOH . F 3 HOH B 5 605 38 HOH HOH . F 3 HOH B 6 606 18 HOH HOH . F 3 HOH B 7 607 9 HOH HOH . F 3 HOH B 8 608 17 HOH HOH . F 3 HOH B 9 609 20 HOH HOH . F 3 HOH B 10 610 29 HOH HOH . F 3 HOH B 11 611 40 HOH HOH . F 3 HOH B 12 612 23 HOH HOH . F 3 HOH B 13 613 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 VQ7 . . . D 2 73.977 48.897 21.063 1 29.23 ? O4 VQ7 501 B 1 HETATM 2 C C22 VQ7 . . . D 2 72.84 49.267 20.696 1 35.11 ? C22 VQ7 501 B 1 HETATM 3 N N VQ7 . . . D 2 72.368 50.455 21.091 1 34.78 ? N VQ7 501 B 1 HETATM 4 C C VQ7 . . . D 2 73.309 51.156 21.972 1 28.45 ? C VQ7 501 B 1 HETATM 5 N N2 VQ7 . . . D 2 72.143 48.444 19.898 1 37.04 ? N2 VQ7 501 B 1 HETATM 6 C C7 VQ7 . . . D 2 70.928 48.784 19.461 1 34.59 ? C7 VQ7 501 B 1 HETATM 7 C C6 VQ7 . . . D 2 70.388 50.019 19.854 1 35.55 ? C6 VQ7 501 B 1 HETATM 8 C C1 VQ7 . . . D 2 71.125 50.882 20.692 1 41.78 ? C1 VQ7 501 B 1 HETATM 9 N N1 VQ7 . . . D 2 70.503 52.122 21.035 1 43.25 ? N1 VQ7 501 B 1 HETATM 10 C C5 VQ7 . . . D 2 69.041 52.173 20.97 1 43.58 ? C5 VQ7 501 B 1 HETATM 11 C C4 VQ7 . . . D 2 68.528 53.302 21.875 1 51.06 ? C4 VQ7 501 B 1 HETATM 12 S S VQ7 . . . D 2 69.148 54.794 21.448 1 61.35 ? S VQ7 501 B 1 HETATM 13 O O VQ7 . . . D 2 69.299 55.627 22.614 1 47.43 ? O VQ7 501 B 1 HETATM 14 O O1 VQ7 . . . D 2 68.324 55.434 20.465 1 62.28 ? O1 VQ7 501 B 1 HETATM 15 C C3 VQ7 . . . D 2 70.628 54.546 20.748 1 52.35 ? C3 VQ7 501 B 1 HETATM 16 C C2 VQ7 . . . D 2 71.251 53.338 21.415 1 38.14 ? C2 VQ7 501 B 1 HETATM 17 O O2 VQ7 . . . D 2 70.317 47.858 18.656 1 33.64 ? O2 VQ7 501 B 1 HETATM 18 C C8 VQ7 . . . D 2 70.867 46.52 18.617 1 36.56 ? C8 VQ7 501 B 1 HETATM 19 C C9 VQ7 . . . D 2 69.73 45.534 18.452 1 35.46 ? C9 VQ7 501 B 1 HETATM 20 C C21 VQ7 . . . D 2 69.563 44.768 17.297 1 30.68 ? C21 VQ7 501 B 1 HETATM 21 C C20 VQ7 . . . D 2 68.469 43.892 17.2 1 40.1 ? C20 VQ7 501 B 1 HETATM 22 F F4 VQ7 . . . D 2 68.277 43.141 16.082 1 33.54 ? F4 VQ7 501 B 1 HETATM 23 C C12 VQ7 . . . D 2 67.578 43.792 18.268 1 36.74 ? C12 VQ7 501 B 1 HETATM 24 C C11 VQ7 . . . D 2 67.761 44.549 19.407 1 39.21 ? C11 VQ7 501 B 1 HETATM 25 F F VQ7 . . . D 2 66.879 44.437 20.42 1 46.02 ? F VQ7 501 B 1 HETATM 26 C C10 VQ7 . . . D 2 68.832 45.421 19.5 1 34.25 ? C10 VQ7 501 B 1 HETATM 27 O O3 VQ7 . . . D 2 66.472 42.977 18.239 1 44.28 ? O3 VQ7 501 B 1 HETATM 28 C C13 VQ7 . . . D 2 65.226 43.581 18.076 1 40.5 ? C13 VQ7 501 B 1 HETATM 29 C C19 VQ7 . . . D 2 64.047 42.834 18.193 1 40.25 ? C19 VQ7 501 B 1 HETATM 30 C C17 VQ7 . . . D 2 62.788 43.429 18.03 1 38.63 ? C17 VQ7 501 B 1 HETATM 31 C C18 VQ7 . . . D 2 61.522 42.609 18.144 1 40.05 ? C18 VQ7 501 B 1 HETATM 32 F F3 VQ7 . . . D 2 60.81 42.945 19.194 1 41.27 ? F3 VQ7 501 B 1 HETATM 33 F F2 VQ7 . . . D 2 60.795 42.811 17.062 1 41.44 ? F2 VQ7 501 B 1 HETATM 34 F F1 VQ7 . . . D 2 61.803 41.33 18.274 1 43.68 ? F1 VQ7 501 B 1 HETATM 35 C C16 VQ7 . . . D 2 62.694 44.786 17.744 1 40.38 ? C16 VQ7 501 B 1 HETATM 36 CL CL VQ7 . . . D 2 61.058 45.541 17.525 1 54.55 ? CL VQ7 501 B 1 HETATM 37 C C15 VQ7 . . . D 2 63.866 45.545 17.636 1 36.67 ? C15 VQ7 501 B 1 HETATM 38 C C14 VQ7 . . . D 2 65.118 44.948 17.797 1 36.63 ? C14 VQ7 501 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 38 #