data_5I8Q # _model_server_result.job_id GlYZ9EbbzXTDxmGBjoL1Bg _model_server_result.datetime_utc '2024-11-22 09:40:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 5I8Q # _exptl.entry_id 5I8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 3.6.4.13 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I8Q _cell.length_a 168.063 _cell.length_b 154.031 _cell.length_c 78.988 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F 1 1 B,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 123 A THR 123 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 A OD2 ASP 215 A ASP 215 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc3 A OG SER 382 A SER 382 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc4 E MG MG . A MG 801 1_555 F O3G ANP . A ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 E MG MG . A MG 801 1_555 F O1B ANP . A ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc6 B OG1 THR 123 B THR 123 1_555 G MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc7 B OD2 ASP 215 B ASP 215 1_555 G MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc8 B OG SER 382 B SER 382 1_555 G MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc9 G MG MG . B MG 801 1_555 H O3G ANP . B ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc10 G MG MG . B MG 801 1_555 H O2B ANP . B ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5I8Q _atom_sites.fract_transf_matrix[1][1] 0.00595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG A 1 801 800 MG MG . F 5 ANP A 1 802 1000 ANP ANP . G 4 MG B 1 801 800 MG MG . H 5 ANP B 1 802 1000 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 5 66.985 46.889 31.749 1 163.85 ? PG ANP 802 A 1 HETATM 2 O O1G ANP . . . F 5 66.639 47.115 30.288 1 161.28 ? O1G ANP 802 A 1 HETATM 3 O O2G ANP . . . F 5 65.752 46.586 32.495 1 165.29 ? O2G ANP 802 A 1 HETATM 4 O O3G ANP . . . F 5 67.926 45.733 31.866 1 163.06 ? O3G ANP 802 A 1 HETATM 5 P PB ANP . . . F 5 68.903 47.834 33.467 1 168.03 ? PB ANP 802 A 1 HETATM 6 O O1B ANP . . . F 5 70.016 47.098 32.722 1 166.01 ? O1B ANP 802 A 1 HETATM 7 O O2B ANP . . . F 5 68.334 46.929 34.525 1 169.53 ? O2B ANP 802 A 1 HETATM 8 N N3B ANP . . . F 5 67.695 48.264 32.373 1 166.19 ? N3B ANP 802 A 1 HETATM 9 P PA ANP . . . F 5 70.423 50.233 33.405 1 170.1 ? PA ANP 802 A 1 HETATM 10 O O1A ANP . . . F 5 69.605 50.927 32.295 1 168.44 ? O1A ANP 802 A 1 HETATM 11 O O2A ANP . . . F 5 71.618 49.541 32.785 1 168.54 ? O2A ANP 802 A 1 HETATM 12 O O3A ANP . . . F 5 69.498 49.139 34.162 1 170.59 ? O3A ANP 802 A 1 HETATM 13 O O5' ANP . . . F 5 70.936 51.337 34.486 1 173.35 ? O5' ANP 802 A 1 HETATM 14 C C5' ANP . . . F 5 70.843 52.729 34.151 1 173.88 ? C5' ANP 802 A 1 HETATM 15 C C4' ANP . . . F 5 70.159 53.427 35.241 1 176.6 ? C4' ANP 802 A 1 HETATM 16 O O4' ANP . . . F 5 70.886 54.686 35.587 1 178.57 ? O4' ANP 802 A 1 HETATM 17 C C3' ANP . . . F 5 68.792 53.808 34.819 1 175.97 ? C3' ANP 802 A 1 HETATM 18 O O3' ANP . . . F 5 67.835 52.821 35.291 1 176.07 ? O3' ANP 802 A 1 HETATM 19 C C2' ANP . . . F 5 68.515 55.099 35.422 1 178.37 ? C2' ANP 802 A 1 HETATM 20 O O2' ANP . . . F 5 67.714 54.912 36.598 1 180.7 ? O2' ANP 802 A 1 HETATM 21 C C1' ANP . . . F 5 69.825 55.703 35.803 1 179.78 ? C1' ANP 802 A 1 HETATM 22 N N9 ANP . . . F 5 70.084 56.829 35.035 1 179.32 ? N9 ANP 802 A 1 HETATM 23 C C8 ANP . . . F 5 69.929 58.102 35.418 1 181.29 ? C8 ANP 802 A 1 HETATM 24 N N7 ANP . . . F 5 70.27 58.914 34.438 1 180.25 ? N7 ANP 802 A 1 HETATM 25 C C5 ANP . . . F 5 70.659 58.197 33.387 1 177.63 ? C5 ANP 802 A 1 HETATM 26 C C6 ANP . . . F 5 71.116 58.506 32.107 1 175.78 ? C6 ANP 802 A 1 HETATM 27 N N6 ANP . . . F 5 71.239 59.85 31.713 1 176.57 ? N6 ANP 802 A 1 HETATM 28 N N1 ANP . . . F 5 71.435 57.536 31.26 1 173.39 ? N1 ANP 802 A 1 HETATM 29 C C2 ANP . . . F 5 71.327 56.233 31.611 1 172.61 ? C2 ANP 802 A 1 HETATM 30 N N3 ANP . . . F 5 70.887 55.894 32.846 1 174.38 ? N3 ANP 802 A 1 HETATM 31 C C4 ANP . . . F 5 70.549 56.844 33.746 1 176.92 ? C4 ANP 802 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #