data_5I8S # _model_server_result.job_id -LBJKqol9g-O65ieOW0yyg _model_server_result.datetime_utc '2024-10-12 15:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5I8S # _exptl.entry_id 5I8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I8S _cell.length_a 79.09 _cell.length_b 79.09 _cell.length_c 115.355 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 A NE2 HIS 90 A HIS 90 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc3 A OE1 GLU 94 A GLU 94 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 A NE2 HIS 133 A HIS 133 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 B NI NI . A NI 201 1_555 D O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 B NI NI . A NI 201 1_555 D O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5I8S _atom_sites.fract_transf_matrix[1][1] 0.012644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 1 NI NI . C 3 LEA A 1 202 1 LEA LIG . D 4 HOH A 1 301 142 HOH HOH . D 4 HOH A 2 302 196 HOH HOH . D 4 HOH A 3 303 166 HOH HOH . D 4 HOH A 4 304 29 HOH HOH . D 4 HOH A 5 305 133 HOH HOH . D 4 HOH A 6 306 161 HOH HOH . D 4 HOH A 7 307 223 HOH HOH . D 4 HOH A 8 308 167 HOH HOH . D 4 HOH A 9 309 239 HOH HOH . D 4 HOH A 10 310 36 HOH HOH . D 4 HOH A 11 311 1 HOH HOH . D 4 HOH A 12 312 217 HOH HOH . D 4 HOH A 13 313 178 HOH HOH . D 4 HOH A 14 314 15 HOH HOH . D 4 HOH A 15 315 130 HOH HOH . D 4 HOH A 16 316 150 HOH HOH . D 4 HOH A 17 317 86 HOH HOH . D 4 HOH A 18 318 52 HOH HOH . D 4 HOH A 19 319 210 HOH HOH . D 4 HOH A 20 320 42 HOH HOH . D 4 HOH A 21 321 44 HOH HOH . D 4 HOH A 22 322 233 HOH HOH . D 4 HOH A 23 323 4 HOH HOH . D 4 HOH A 24 324 79 HOH HOH . D 4 HOH A 25 325 104 HOH HOH . D 4 HOH A 26 326 11 HOH HOH . D 4 HOH A 27 327 125 HOH HOH . D 4 HOH A 28 328 194 HOH HOH . D 4 HOH A 29 329 25 HOH HOH . D 4 HOH A 30 330 132 HOH HOH . D 4 HOH A 31 331 228 HOH HOH . D 4 HOH A 32 332 2 HOH HOH . D 4 HOH A 33 333 69 HOH HOH . D 4 HOH A 34 334 156 HOH HOH . D 4 HOH A 35 335 32 HOH HOH . D 4 HOH A 36 336 27 HOH HOH . D 4 HOH A 37 337 41 HOH HOH . D 4 HOH A 38 338 93 HOH HOH . D 4 HOH A 39 339 73 HOH HOH . D 4 HOH A 40 340 109 HOH HOH . D 4 HOH A 41 341 135 HOH HOH . D 4 HOH A 42 342 221 HOH HOH . D 4 HOH A 43 343 34 HOH HOH . D 4 HOH A 44 344 78 HOH HOH . D 4 HOH A 45 345 5 HOH HOH . D 4 HOH A 46 346 7 HOH HOH . D 4 HOH A 47 347 111 HOH HOH . D 4 HOH A 48 348 151 HOH HOH . D 4 HOH A 49 349 139 HOH HOH . D 4 HOH A 50 350 19 HOH HOH . D 4 HOH A 51 351 208 HOH HOH . D 4 HOH A 52 352 202 HOH HOH . D 4 HOH A 53 353 43 HOH HOH . D 4 HOH A 54 354 40 HOH HOH . D 4 HOH A 55 355 199 HOH HOH . D 4 HOH A 56 356 21 HOH HOH . D 4 HOH A 57 357 22 HOH HOH . D 4 HOH A 58 358 115 HOH HOH . D 4 HOH A 59 359 126 HOH HOH . D 4 HOH A 60 360 225 HOH HOH . D 4 HOH A 61 361 8 HOH HOH . D 4 HOH A 62 362 254 HOH HOH . D 4 HOH A 63 363 96 HOH HOH . D 4 HOH A 64 364 26 HOH HOH . D 4 HOH A 65 365 205 HOH HOH . D 4 HOH A 66 366 55 HOH HOH . D 4 HOH A 67 367 46 HOH HOH . D 4 HOH A 68 368 37 HOH HOH . D 4 HOH A 69 369 56 HOH HOH . D 4 HOH A 70 370 98 HOH HOH . D 4 HOH A 71 371 147 HOH HOH . D 4 HOH A 72 372 128 HOH HOH . D 4 HOH A 73 373 12 HOH HOH . D 4 HOH A 74 374 28 HOH HOH . D 4 HOH A 75 375 66 HOH HOH . D 4 HOH A 76 376 82 HOH HOH . D 4 HOH A 77 377 131 HOH HOH . D 4 HOH A 78 378 62 HOH HOH . D 4 HOH A 79 379 146 HOH HOH . D 4 HOH A 80 380 18 HOH HOH . D 4 HOH A 81 381 14 HOH HOH . D 4 HOH A 82 382 198 HOH HOH . D 4 HOH A 83 383 9 HOH HOH . D 4 HOH A 84 384 141 HOH HOH . D 4 HOH A 85 385 83 HOH HOH . D 4 HOH A 86 386 172 HOH HOH . D 4 HOH A 87 387 110 HOH HOH . D 4 HOH A 88 388 17 HOH HOH . D 4 HOH A 89 389 67 HOH HOH . D 4 HOH A 90 390 3 HOH HOH . D 4 HOH A 91 391 112 HOH HOH . D 4 HOH A 92 392 24 HOH HOH . D 4 HOH A 93 393 13 HOH HOH . D 4 HOH A 94 394 50 HOH HOH . D 4 HOH A 95 395 31 HOH HOH . D 4 HOH A 96 396 238 HOH HOH . D 4 HOH A 97 397 232 HOH HOH . D 4 HOH A 98 398 64 HOH HOH . D 4 HOH A 99 399 23 HOH HOH . D 4 HOH A 100 400 252 HOH HOH . D 4 HOH A 101 401 181 HOH HOH . D 4 HOH A 102 402 108 HOH HOH . D 4 HOH A 103 403 81 HOH HOH . D 4 HOH A 104 404 94 HOH HOH . D 4 HOH A 105 405 63 HOH HOH . D 4 HOH A 106 406 102 HOH HOH . D 4 HOH A 107 407 162 HOH HOH . D 4 HOH A 108 408 200 HOH HOH . D 4 HOH A 109 409 35 HOH HOH . D 4 HOH A 110 410 124 HOH HOH . D 4 HOH A 111 411 30 HOH HOH . D 4 HOH A 112 412 129 HOH HOH . D 4 HOH A 113 413 136 HOH HOH . D 4 HOH A 114 414 148 HOH HOH . D 4 HOH A 115 415 10 HOH HOH . D 4 HOH A 116 416 16 HOH HOH . D 4 HOH A 117 417 59 HOH HOH . D 4 HOH A 118 418 85 HOH HOH . D 4 HOH A 119 419 154 HOH HOH . D 4 HOH A 120 420 173 HOH HOH . D 4 HOH A 121 421 144 HOH HOH . D 4 HOH A 122 422 97 HOH HOH . D 4 HOH A 123 423 61 HOH HOH . D 4 HOH A 124 424 230 HOH HOH . D 4 HOH A 125 425 103 HOH HOH . D 4 HOH A 126 426 72 HOH HOH . D 4 HOH A 127 427 51 HOH HOH . D 4 HOH A 128 428 20 HOH HOH . D 4 HOH A 129 429 77 HOH HOH . D 4 HOH A 130 430 53 HOH HOH . D 4 HOH A 131 431 222 HOH HOH . D 4 HOH A 132 432 235 HOH HOH . D 4 HOH A 133 433 106 HOH HOH . D 4 HOH A 134 434 38 HOH HOH . D 4 HOH A 135 435 122 HOH HOH . D 4 HOH A 136 436 65 HOH HOH . D 4 HOH A 137 437 140 HOH HOH . D 4 HOH A 138 438 75 HOH HOH . D 4 HOH A 139 439 237 HOH HOH . D 4 HOH A 140 440 49 HOH HOH . D 4 HOH A 141 441 186 HOH HOH . D 4 HOH A 142 442 214 HOH HOH . D 4 HOH A 143 443 269 HOH HOH . D 4 HOH A 144 444 176 HOH HOH . D 4 HOH A 145 445 177 HOH HOH . D 4 HOH A 146 446 99 HOH HOH . D 4 HOH A 147 447 84 HOH HOH . D 4 HOH A 148 448 253 HOH HOH . D 4 HOH A 149 449 74 HOH HOH . D 4 HOH A 150 450 58 HOH HOH . D 4 HOH A 151 451 45 HOH HOH . D 4 HOH A 152 452 138 HOH HOH . D 4 HOH A 153 453 48 HOH HOH . D 4 HOH A 154 454 89 HOH HOH . D 4 HOH A 155 455 192 HOH HOH . D 4 HOH A 156 456 6 HOH HOH . D 4 HOH A 157 457 240 HOH HOH . D 4 HOH A 158 458 90 HOH HOH . D 4 HOH A 159 459 60 HOH HOH . D 4 HOH A 160 460 88 HOH HOH . D 4 HOH A 161 461 227 HOH HOH . D 4 HOH A 162 462 95 HOH HOH . D 4 HOH A 163 463 54 HOH HOH . D 4 HOH A 164 464 260 HOH HOH . D 4 HOH A 165 465 224 HOH HOH . D 4 HOH A 166 466 39 HOH HOH . D 4 HOH A 167 467 257 HOH HOH . D 4 HOH A 168 468 123 HOH HOH . D 4 HOH A 169 469 220 HOH HOH . D 4 HOH A 170 470 57 HOH HOH . D 4 HOH A 171 471 170 HOH HOH . D 4 HOH A 172 472 193 HOH HOH . D 4 HOH A 173 473 33 HOH HOH . D 4 HOH A 174 474 218 HOH HOH . D 4 HOH A 175 475 160 HOH HOH . D 4 HOH A 176 476 87 HOH HOH . D 4 HOH A 177 477 189 HOH HOH . D 4 HOH A 178 478 203 HOH HOH . D 4 HOH A 179 479 268 HOH HOH . D 4 HOH A 180 480 213 HOH HOH . D 4 HOH A 181 481 185 HOH HOH . D 4 HOH A 182 482 258 HOH HOH . D 4 HOH A 183 483 187 HOH HOH . D 4 HOH A 184 484 80 HOH HOH . D 4 HOH A 185 485 164 HOH HOH . D 4 HOH A 186 486 159 HOH HOH . D 4 HOH A 187 487 71 HOH HOH . D 4 HOH A 188 488 180 HOH HOH . D 4 HOH A 189 489 201 HOH HOH . D 4 HOH A 190 490 163 HOH HOH . D 4 HOH A 191 491 137 HOH HOH . D 4 HOH A 192 492 70 HOH HOH . D 4 HOH A 193 493 92 HOH HOH . D 4 HOH A 194 494 121 HOH HOH . D 4 HOH A 195 495 153 HOH HOH . D 4 HOH A 196 496 255 HOH HOH . D 4 HOH A 197 497 226 HOH HOH . D 4 HOH A 198 498 249 HOH HOH . D 4 HOH A 199 499 267 HOH HOH . D 4 HOH A 200 500 145 HOH HOH . D 4 HOH A 201 501 207 HOH HOH . D 4 HOH A 202 502 195 HOH HOH . D 4 HOH A 203 503 234 HOH HOH . D 4 HOH A 204 504 101 HOH HOH . D 4 HOH A 205 505 158 HOH HOH . D 4 HOH A 206 506 244 HOH HOH . D 4 HOH A 207 507 264 HOH HOH . D 4 HOH A 208 508 118 HOH HOH . D 4 HOH A 209 509 127 HOH HOH . D 4 HOH A 210 510 171 HOH HOH . D 4 HOH A 211 511 116 HOH HOH . D 4 HOH A 212 512 143 HOH HOH . D 4 HOH A 213 513 76 HOH HOH . D 4 HOH A 214 514 204 HOH HOH . D 4 HOH A 215 515 231 HOH HOH . D 4 HOH A 216 516 113 HOH HOH . D 4 HOH A 217 517 216 HOH HOH . D 4 HOH A 218 518 270 HOH HOH . D 4 HOH A 219 519 212 HOH HOH . D 4 HOH A 220 520 155 HOH HOH . D 4 HOH A 221 521 149 HOH HOH . D 4 HOH A 222 522 265 HOH HOH . D 4 HOH A 223 523 100 HOH HOH . D 4 HOH A 224 524 117 HOH HOH . D 4 HOH A 225 525 168 HOH HOH . D 4 HOH A 226 526 259 HOH HOH . D 4 HOH A 227 527 197 HOH HOH . D 4 HOH A 228 528 152 HOH HOH . D 4 HOH A 229 529 256 HOH HOH . D 4 HOH A 230 530 229 HOH HOH . D 4 HOH A 231 531 107 HOH HOH . D 4 HOH A 232 532 174 HOH HOH . D 4 HOH A 233 533 114 HOH HOH . D 4 HOH A 234 534 165 HOH HOH . D 4 HOH A 235 535 206 HOH HOH . D 4 HOH A 236 536 261 HOH HOH . D 4 HOH A 237 537 241 HOH HOH . D 4 HOH A 238 538 243 HOH HOH . D 4 HOH A 239 539 105 HOH HOH . D 4 HOH A 240 540 215 HOH HOH . D 4 HOH A 241 541 47 HOH HOH . D 4 HOH A 242 542 119 HOH HOH . D 4 HOH A 243 543 188 HOH HOH . D 4 HOH A 244 544 211 HOH HOH . D 4 HOH A 245 545 263 HOH HOH . D 4 HOH A 246 546 120 HOH HOH . D 4 HOH A 247 547 236 HOH HOH . D 4 HOH A 248 548 191 HOH HOH . D 4 HOH A 249 549 190 HOH HOH . D 4 HOH A 250 550 209 HOH HOH . D 4 HOH A 251 551 246 HOH HOH . D 4 HOH A 252 552 179 HOH HOH . D 4 HOH A 253 553 219 HOH HOH . D 4 HOH A 254 554 169 HOH HOH . D 4 HOH A 255 555 184 HOH HOH . D 4 HOH A 256 556 266 HOH HOH . D 4 HOH A 257 557 91 HOH HOH . D 4 HOH A 258 558 182 HOH HOH . D 4 HOH A 259 559 134 HOH HOH . D 4 HOH A 260 560 262 HOH HOH . D 4 HOH A 261 561 247 HOH HOH . D 4 HOH A 262 562 68 HOH HOH . D 4 HOH A 263 563 250 HOH HOH . D 4 HOH A 264 564 183 HOH HOH . D 4 HOH A 265 565 271 HOH HOH . D 4 HOH A 266 566 175 HOH HOH . D 4 HOH A 267 567 251 HOH HOH . D 4 HOH A 268 568 245 HOH HOH . D 4 HOH A 269 569 248 HOH HOH . D 4 HOH A 270 570 157 HOH HOH . D 4 HOH A 271 571 242 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 21.131 _atom_site.Cartn_y 79.658 _atom_site.Cartn_z 134.357 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #