data_5I93 # _model_server_result.job_id 0AB2v7pgV0jIlrHCswvbPg _model_server_result.datetime_utc '2024-11-05 03:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5I93 # _exptl.entry_id 5I93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.115 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-oxopentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I93 _cell.length_a 79.025 _cell.length_b 79.025 _cell.length_c 115.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A NE2 HIS 90 A HIS 90 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A OE1 GLU 94 A GLU 94 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 A NE2 HIS 133 A HIS 133 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 B NI NI . A NI 201 1_555 D O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 B NI NI . A NI 201 1_555 D O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'C5 H8 O3' _chem_comp.formula_weight 116.115 _chem_comp.id 69O _chem_comp.mon_nstd_flag . _chem_comp.name '2-oxopentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-Ketopentanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O05 C04 69O doub 1 n n O07 C06 69O doub 2 n n C04 C06 69O sing 3 n n C04 C03 69O sing 4 n n C06 O08 69O sing 5 n n C01 C02 69O sing 6 n n C03 C02 69O sing 7 n n C01 H013 69O sing 8 n n C01 H012 69O sing 9 n n C01 H011 69O sing 10 n n C02 H022 69O sing 11 n n C02 H021 69O sing 12 n n C03 H031 69O sing 13 n n C03 H032 69O sing 14 n n O08 H1 69O sing 15 n n # _atom_sites.entry_id 5I93 _atom_sites.fract_transf_matrix[1][1] 0.012654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 1 NI NI . C 3 69O A 1 202 1 69O LIG . D 4 HOH A 1 301 192 HOH HOH . D 4 HOH A 2 302 134 HOH HOH . D 4 HOH A 3 303 59 HOH HOH . D 4 HOH A 4 304 190 HOH HOH . D 4 HOH A 5 305 40 HOH HOH . D 4 HOH A 6 306 99 HOH HOH . D 4 HOH A 7 307 3 HOH HOH . D 4 HOH A 8 308 7 HOH HOH . D 4 HOH A 9 309 57 HOH HOH . D 4 HOH A 10 310 83 HOH HOH . D 4 HOH A 11 311 51 HOH HOH . D 4 HOH A 12 312 50 HOH HOH . D 4 HOH A 13 313 20 HOH HOH . D 4 HOH A 14 314 93 HOH HOH . D 4 HOH A 15 315 27 HOH HOH . D 4 HOH A 16 316 106 HOH HOH . D 4 HOH A 17 317 49 HOH HOH . D 4 HOH A 18 318 149 HOH HOH . D 4 HOH A 19 319 34 HOH HOH . D 4 HOH A 20 320 157 HOH HOH . D 4 HOH A 21 321 60 HOH HOH . D 4 HOH A 22 322 202 HOH HOH . D 4 HOH A 23 323 67 HOH HOH . D 4 HOH A 24 324 1 HOH HOH . D 4 HOH A 25 325 21 HOH HOH . D 4 HOH A 26 326 120 HOH HOH . D 4 HOH A 27 327 163 HOH HOH . D 4 HOH A 28 328 16 HOH HOH . D 4 HOH A 29 329 122 HOH HOH . D 4 HOH A 30 330 24 HOH HOH . D 4 HOH A 31 331 55 HOH HOH . D 4 HOH A 32 332 73 HOH HOH . D 4 HOH A 33 333 148 HOH HOH . D 4 HOH A 34 334 165 HOH HOH . D 4 HOH A 35 335 26 HOH HOH . D 4 HOH A 36 336 101 HOH HOH . D 4 HOH A 37 337 72 HOH HOH . D 4 HOH A 38 338 58 HOH HOH . D 4 HOH A 39 339 112 HOH HOH . D 4 HOH A 40 340 28 HOH HOH . D 4 HOH A 41 341 146 HOH HOH . D 4 HOH A 42 342 84 HOH HOH . D 4 HOH A 43 343 74 HOH HOH . D 4 HOH A 44 344 13 HOH HOH . D 4 HOH A 45 345 12 HOH HOH . D 4 HOH A 46 346 30 HOH HOH . D 4 HOH A 47 347 8 HOH HOH . D 4 HOH A 48 348 89 HOH HOH . D 4 HOH A 49 349 39 HOH HOH . D 4 HOH A 50 350 177 HOH HOH . D 4 HOH A 51 351 187 HOH HOH . D 4 HOH A 52 352 211 HOH HOH . D 4 HOH A 53 353 2 HOH HOH . D 4 HOH A 54 354 18 HOH HOH . D 4 HOH A 55 355 114 HOH HOH . D 4 HOH A 56 356 25 HOH HOH . D 4 HOH A 57 357 61 HOH HOH . D 4 HOH A 58 358 14 HOH HOH . D 4 HOH A 59 359 133 HOH HOH . D 4 HOH A 60 360 71 HOH HOH . D 4 HOH A 61 361 23 HOH HOH . D 4 HOH A 62 362 86 HOH HOH . D 4 HOH A 63 363 46 HOH HOH . D 4 HOH A 64 364 179 HOH HOH . D 4 HOH A 65 365 65 HOH HOH . D 4 HOH A 66 366 119 HOH HOH . D 4 HOH A 67 367 139 HOH HOH . D 4 HOH A 68 368 41 HOH HOH . D 4 HOH A 69 369 204 HOH HOH . D 4 HOH A 70 370 82 HOH HOH . D 4 HOH A 71 371 111 HOH HOH . D 4 HOH A 72 372 75 HOH HOH . D 4 HOH A 73 373 42 HOH HOH . D 4 HOH A 74 374 6 HOH HOH . D 4 HOH A 75 375 94 HOH HOH . D 4 HOH A 76 376 9 HOH HOH . D 4 HOH A 77 377 45 HOH HOH . D 4 HOH A 78 378 5 HOH HOH . D 4 HOH A 79 379 115 HOH HOH . D 4 HOH A 80 380 35 HOH HOH . D 4 HOH A 81 381 32 HOH HOH . D 4 HOH A 82 382 4 HOH HOH . D 4 HOH A 83 383 37 HOH HOH . D 4 HOH A 84 384 29 HOH HOH . D 4 HOH A 85 385 15 HOH HOH . D 4 HOH A 86 386 110 HOH HOH . D 4 HOH A 87 387 194 HOH HOH . D 4 HOH A 88 388 70 HOH HOH . D 4 HOH A 89 389 11 HOH HOH . D 4 HOH A 90 390 44 HOH HOH . D 4 HOH A 91 391 87 HOH HOH . D 4 HOH A 92 392 54 HOH HOH . D 4 HOH A 93 393 69 HOH HOH . D 4 HOH A 94 394 121 HOH HOH . D 4 HOH A 95 395 68 HOH HOH . D 4 HOH A 96 396 22 HOH HOH . D 4 HOH A 97 397 127 HOH HOH . D 4 HOH A 98 398 63 HOH HOH . D 4 HOH A 99 399 62 HOH HOH . D 4 HOH A 100 400 81 HOH HOH . D 4 HOH A 101 401 176 HOH HOH . D 4 HOH A 102 402 138 HOH HOH . D 4 HOH A 103 403 31 HOH HOH . D 4 HOH A 104 404 33 HOH HOH . D 4 HOH A 105 405 43 HOH HOH . D 4 HOH A 106 406 100 HOH HOH . D 4 HOH A 107 407 53 HOH HOH . D 4 HOH A 108 408 19 HOH HOH . D 4 HOH A 109 409 66 HOH HOH . D 4 HOH A 110 410 196 HOH HOH . D 4 HOH A 111 411 156 HOH HOH . D 4 HOH A 112 412 118 HOH HOH . D 4 HOH A 113 413 175 HOH HOH . D 4 HOH A 114 414 64 HOH HOH . D 4 HOH A 115 415 132 HOH HOH . D 4 HOH A 116 416 95 HOH HOH . D 4 HOH A 117 417 105 HOH HOH . D 4 HOH A 118 418 124 HOH HOH . D 4 HOH A 119 419 17 HOH HOH . D 4 HOH A 120 420 103 HOH HOH . D 4 HOH A 121 421 125 HOH HOH . D 4 HOH A 122 422 136 HOH HOH . D 4 HOH A 123 423 38 HOH HOH . D 4 HOH A 124 424 79 HOH HOH . D 4 HOH A 125 425 78 HOH HOH . D 4 HOH A 126 426 150 HOH HOH . D 4 HOH A 127 427 48 HOH HOH . D 4 HOH A 128 428 108 HOH HOH . D 4 HOH A 129 429 144 HOH HOH . D 4 HOH A 130 430 188 HOH HOH . D 4 HOH A 131 431 154 HOH HOH . D 4 HOH A 132 432 77 HOH HOH . D 4 HOH A 133 433 109 HOH HOH . D 4 HOH A 134 434 47 HOH HOH . D 4 HOH A 135 435 102 HOH HOH . D 4 HOH A 136 436 161 HOH HOH . D 4 HOH A 137 437 80 HOH HOH . D 4 HOH A 138 438 117 HOH HOH . D 4 HOH A 139 439 96 HOH HOH . D 4 HOH A 140 440 126 HOH HOH . D 4 HOH A 141 441 206 HOH HOH . D 4 HOH A 142 442 123 HOH HOH . D 4 HOH A 143 443 207 HOH HOH . D 4 HOH A 144 444 195 HOH HOH . D 4 HOH A 145 445 98 HOH HOH . D 4 HOH A 146 446 151 HOH HOH . D 4 HOH A 147 447 200 HOH HOH . D 4 HOH A 148 448 171 HOH HOH . D 4 HOH A 149 449 10 HOH HOH . D 4 HOH A 150 450 158 HOH HOH . D 4 HOH A 151 451 153 HOH HOH . D 4 HOH A 152 452 167 HOH HOH . D 4 HOH A 153 453 130 HOH HOH . D 4 HOH A 154 454 210 HOH HOH . D 4 HOH A 155 455 88 HOH HOH . D 4 HOH A 156 456 201 HOH HOH . D 4 HOH A 157 457 90 HOH HOH . D 4 HOH A 158 458 142 HOH HOH . D 4 HOH A 159 459 107 HOH HOH . D 4 HOH A 160 460 169 HOH HOH . D 4 HOH A 161 461 198 HOH HOH . D 4 HOH A 162 462 182 HOH HOH . D 4 HOH A 163 463 168 HOH HOH . D 4 HOH A 164 464 166 HOH HOH . D 4 HOH A 165 465 128 HOH HOH . D 4 HOH A 166 466 137 HOH HOH . D 4 HOH A 167 467 180 HOH HOH . D 4 HOH A 168 468 141 HOH HOH . D 4 HOH A 169 469 173 HOH HOH . D 4 HOH A 170 470 193 HOH HOH . D 4 HOH A 171 471 143 HOH HOH . D 4 HOH A 172 472 104 HOH HOH . D 4 HOH A 173 473 181 HOH HOH . D 4 HOH A 174 474 162 HOH HOH . D 4 HOH A 175 475 140 HOH HOH . D 4 HOH A 176 476 76 HOH HOH . D 4 HOH A 177 477 152 HOH HOH . D 4 HOH A 178 478 184 HOH HOH . D 4 HOH A 179 479 113 HOH HOH . D 4 HOH A 180 480 92 HOH HOH . D 4 HOH A 181 481 209 HOH HOH . D 4 HOH A 182 482 159 HOH HOH . D 4 HOH A 183 483 199 HOH HOH . D 4 HOH A 184 484 97 HOH HOH . D 4 HOH A 185 485 170 HOH HOH . D 4 HOH A 186 486 131 HOH HOH . D 4 HOH A 187 487 147 HOH HOH . D 4 HOH A 188 488 208 HOH HOH . D 4 HOH A 189 489 116 HOH HOH . D 4 HOH A 190 490 129 HOH HOH . D 4 HOH A 191 491 191 HOH HOH . D 4 HOH A 192 492 205 HOH HOH . D 4 HOH A 193 493 145 HOH HOH . D 4 HOH A 194 494 197 HOH HOH . D 4 HOH A 195 495 135 HOH HOH . D 4 HOH A 196 496 155 HOH HOH . D 4 HOH A 197 497 178 HOH HOH . D 4 HOH A 198 498 91 HOH HOH . D 4 HOH A 199 499 56 HOH HOH . D 4 HOH A 200 500 189 HOH HOH . D 4 HOH A 201 501 164 HOH HOH . D 4 HOH A 202 502 160 HOH HOH . D 4 HOH A 203 503 203 HOH HOH . D 4 HOH A 204 504 185 HOH HOH . D 4 HOH A 205 505 52 HOH HOH . D 4 HOH A 206 506 172 HOH HOH . D 4 HOH A 207 507 183 HOH HOH . D 4 HOH A 208 508 36 HOH HOH . D 4 HOH A 209 509 186 HOH HOH . D 4 HOH A 210 510 85 HOH HOH . D 4 HOH A 211 511 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 69O . . . C 3 18.146 87.683 135.619 1 20.8 ? C01 69O 202 A 1 HETATM 2 C C02 69O . . . C 3 18.528 86.24 135.835 1 45.36 ? C02 69O 202 A 1 HETATM 3 C C03 69O . . . C 3 17.356 85.291 135.788 1 39.25 ? C03 69O 202 A 1 HETATM 4 C C04 69O . . . C 3 17.517 84.323 134.635 1 41.18 ? C04 69O 202 A 1 HETATM 5 O O05 69O . . . C 3 17.171 84.686 133.525 1 36.82 ? O05 69O 202 A 1 HETATM 6 C C06 69O . . . C 3 18.112 82.935 134.853 1 45.15 ? C06 69O 202 A 1 HETATM 7 O O07 69O . . . C 3 18.024 82.039 133.964 1 38.78 -1 O07 69O 202 A 1 HETATM 8 O O08 69O . . . C 3 18.698 82.666 135.935 1 39.48 ? O08 69O 202 A 1 HETATM 9 H H013 69O . . . C 3 17.634 87.765 134.787 1 24.96 ? H013 69O 202 A 1 HETATM 10 H H012 69O . . . C 3 18.957 88.23 135.559 1 24.96 ? H012 69O 202 A 1 HETATM 11 H H011 69O . . . C 3 17.599 87.992 136.371 1 24.96 ? H011 69O 202 A 1 HETATM 12 H H022 69O . . . C 3 19.168 85.98 135.142 1 54.43 ? H022 69O 202 A 1 HETATM 13 H H021 69O . . . C 3 18.961 86.159 136.708 1 54.43 ? H021 69O 202 A 1 HETATM 14 H H031 69O . . . C 3 16.531 85.802 135.669 1 47.1 ? H031 69O 202 A 1 HETATM 15 H H032 69O . . . C 3 17.311 84.791 136.627 1 47.1 ? H032 69O 202 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #