data_5I99 # _model_server_result.job_id pIa1Vpuekgs3UXzEv65ocQ _model_server_result.datetime_utc '2024-11-19 17:49:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5I99 # _exptl.entry_id 5I99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I99 _cell.length_a 58.227 _cell.length_b 76.932 _cell.length_c 115.828 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 431 1_555 A SG CYS 76 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 118 A CYS 521 1_555 A SG CYS 174 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5I99 _atom_sites.fract_transf_matrix[1][1] 0.017174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 901 1 GOL GOL . C 3 HOH A 1 1001 109 HOH HOH . C 3 HOH A 2 1002 35 HOH HOH . C 3 HOH A 3 1003 96 HOH HOH . C 3 HOH A 4 1004 108 HOH HOH . C 3 HOH A 5 1005 10 HOH HOH . C 3 HOH A 6 1006 81 HOH HOH . C 3 HOH A 7 1007 145 HOH HOH . C 3 HOH A 8 1008 98 HOH HOH . C 3 HOH A 9 1009 47 HOH HOH . C 3 HOH A 10 1010 3 HOH HOH . C 3 HOH A 11 1011 84 HOH HOH . C 3 HOH A 12 1012 152 HOH HOH . C 3 HOH A 13 1013 63 HOH HOH . C 3 HOH A 14 1014 15 HOH HOH . C 3 HOH A 15 1015 125 HOH HOH . C 3 HOH A 16 1016 75 HOH HOH . C 3 HOH A 17 1017 88 HOH HOH . C 3 HOH A 18 1018 45 HOH HOH . C 3 HOH A 19 1019 54 HOH HOH . C 3 HOH A 20 1020 118 HOH HOH . C 3 HOH A 21 1021 129 HOH HOH . C 3 HOH A 22 1022 110 HOH HOH . C 3 HOH A 23 1023 77 HOH HOH . C 3 HOH A 24 1024 2 HOH HOH . C 3 HOH A 25 1025 44 HOH HOH . C 3 HOH A 26 1026 62 HOH HOH . C 3 HOH A 27 1027 89 HOH HOH . C 3 HOH A 28 1028 39 HOH HOH . C 3 HOH A 29 1029 23 HOH HOH . C 3 HOH A 30 1030 57 HOH HOH . C 3 HOH A 31 1031 13 HOH HOH . C 3 HOH A 32 1032 61 HOH HOH . C 3 HOH A 33 1033 137 HOH HOH . C 3 HOH A 34 1034 21 HOH HOH . C 3 HOH A 35 1035 24 HOH HOH . C 3 HOH A 36 1036 11 HOH HOH . C 3 HOH A 37 1037 9 HOH HOH . C 3 HOH A 38 1038 66 HOH HOH . C 3 HOH A 39 1039 38 HOH HOH . C 3 HOH A 40 1040 41 HOH HOH . C 3 HOH A 41 1041 37 HOH HOH . C 3 HOH A 42 1042 52 HOH HOH . C 3 HOH A 43 1043 104 HOH HOH . C 3 HOH A 44 1044 112 HOH HOH . C 3 HOH A 45 1045 121 HOH HOH . C 3 HOH A 46 1046 60 HOH HOH . C 3 HOH A 47 1047 30 HOH HOH . C 3 HOH A 48 1048 49 HOH HOH . C 3 HOH A 49 1049 29 HOH HOH . C 3 HOH A 50 1050 95 HOH HOH . C 3 HOH A 51 1051 64 HOH HOH . C 3 HOH A 52 1052 150 HOH HOH . C 3 HOH A 53 1053 27 HOH HOH . C 3 HOH A 54 1054 71 HOH HOH . C 3 HOH A 55 1055 127 HOH HOH . C 3 HOH A 56 1056 91 HOH HOH . C 3 HOH A 57 1057 106 HOH HOH . C 3 HOH A 58 1058 16 HOH HOH . C 3 HOH A 59 1059 7 HOH HOH . C 3 HOH A 60 1060 14 HOH HOH . C 3 HOH A 61 1061 1 HOH HOH . C 3 HOH A 62 1062 120 HOH HOH . C 3 HOH A 63 1063 151 HOH HOH . C 3 HOH A 64 1064 122 HOH HOH . C 3 HOH A 65 1065 131 HOH HOH . C 3 HOH A 66 1066 142 HOH HOH . C 3 HOH A 67 1067 43 HOH HOH . C 3 HOH A 68 1068 32 HOH HOH . C 3 HOH A 69 1069 123 HOH HOH . C 3 HOH A 70 1070 17 HOH HOH . C 3 HOH A 71 1071 22 HOH HOH . C 3 HOH A 72 1072 86 HOH HOH . C 3 HOH A 73 1073 148 HOH HOH . C 3 HOH A 74 1074 126 HOH HOH . C 3 HOH A 75 1075 59 HOH HOH . C 3 HOH A 76 1076 50 HOH HOH . C 3 HOH A 77 1077 12 HOH HOH . C 3 HOH A 78 1078 34 HOH HOH . C 3 HOH A 79 1079 42 HOH HOH . C 3 HOH A 80 1080 138 HOH HOH . C 3 HOH A 81 1081 51 HOH HOH . C 3 HOH A 82 1082 92 HOH HOH . C 3 HOH A 83 1083 101 HOH HOH . C 3 HOH A 84 1084 130 HOH HOH . C 3 HOH A 85 1085 56 HOH HOH . C 3 HOH A 86 1086 6 HOH HOH . C 3 HOH A 87 1087 83 HOH HOH . C 3 HOH A 88 1088 68 HOH HOH . C 3 HOH A 89 1089 46 HOH HOH . C 3 HOH A 90 1090 65 HOH HOH . C 3 HOH A 91 1091 36 HOH HOH . C 3 HOH A 92 1092 31 HOH HOH . C 3 HOH A 93 1093 115 HOH HOH . C 3 HOH A 94 1094 69 HOH HOH . C 3 HOH A 95 1095 19 HOH HOH . C 3 HOH A 96 1096 132 HOH HOH . C 3 HOH A 97 1097 80 HOH HOH . C 3 HOH A 98 1098 87 HOH HOH . C 3 HOH A 99 1099 4 HOH HOH . C 3 HOH A 100 1100 124 HOH HOH . C 3 HOH A 101 1101 18 HOH HOH . C 3 HOH A 102 1102 53 HOH HOH . C 3 HOH A 103 1103 8 HOH HOH . C 3 HOH A 104 1104 78 HOH HOH . C 3 HOH A 105 1105 133 HOH HOH . C 3 HOH A 106 1106 76 HOH HOH . C 3 HOH A 107 1107 26 HOH HOH . C 3 HOH A 108 1108 144 HOH HOH . C 3 HOH A 109 1109 5 HOH HOH . C 3 HOH A 110 1110 40 HOH HOH . C 3 HOH A 111 1111 105 HOH HOH . C 3 HOH A 112 1112 140 HOH HOH . C 3 HOH A 113 1113 73 HOH HOH . C 3 HOH A 114 1114 116 HOH HOH . C 3 HOH A 115 1115 20 HOH HOH . C 3 HOH A 116 1116 25 HOH HOH . C 3 HOH A 117 1117 33 HOH HOH . C 3 HOH A 118 1118 139 HOH HOH . C 3 HOH A 119 1119 48 HOH HOH . C 3 HOH A 120 1120 102 HOH HOH . C 3 HOH A 121 1121 28 HOH HOH . C 3 HOH A 122 1122 58 HOH HOH . C 3 HOH A 123 1123 74 HOH HOH . C 3 HOH A 124 1124 70 HOH HOH . C 3 HOH A 125 1125 72 HOH HOH . C 3 HOH A 126 1126 147 HOH HOH . C 3 HOH A 127 1127 141 HOH HOH . C 3 HOH A 128 1128 143 HOH HOH . C 3 HOH A 129 1129 117 HOH HOH . C 3 HOH A 130 1130 82 HOH HOH . C 3 HOH A 131 1131 107 HOH HOH . C 3 HOH A 132 1132 85 HOH HOH . C 3 HOH A 133 1133 136 HOH HOH . C 3 HOH A 134 1134 90 HOH HOH . C 3 HOH A 135 1135 97 HOH HOH . C 3 HOH A 136 1136 114 HOH HOH . C 3 HOH A 137 1137 93 HOH HOH . C 3 HOH A 138 1138 99 HOH HOH . C 3 HOH A 139 1139 79 HOH HOH . C 3 HOH A 140 1140 103 HOH HOH . C 3 HOH A 141 1141 100 HOH HOH . C 3 HOH A 142 1142 55 HOH HOH . C 3 HOH A 143 1143 134 HOH HOH . C 3 HOH A 144 1144 149 HOH HOH . C 3 HOH A 145 1145 119 HOH HOH . C 3 HOH A 146 1146 94 HOH HOH . C 3 HOH A 147 1147 113 HOH HOH . C 3 HOH A 148 1148 135 HOH HOH . C 3 HOH A 149 1149 67 HOH HOH . C 3 HOH A 150 1150 111 HOH HOH . C 3 HOH A 151 1151 128 HOH HOH . C 3 HOH A 152 1152 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 36.346 17.273 34.445 1 58.05 ? C1 GOL 901 A 1 HETATM 2 O O1 GOL . . . B 2 37.319 16.617 33.656 1 58.78 ? O1 GOL 901 A 1 HETATM 3 C C2 GOL . . . B 2 36.918 18.514 35.127 1 60.08 ? C2 GOL 901 A 1 HETATM 4 O O2 GOL . . . B 2 35.973 19.57 35.132 1 49.97 ? O2 GOL 901 A 1 HETATM 5 C C3 GOL . . . B 2 38.173 18.938 34.373 1 71.93 ? C3 GOL 901 A 1 HETATM 6 O O3 GOL . . . B 2 37.851 19.042 33.008 1 78.33 ? O3 GOL 901 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 6 #