data_5I9J
#
_model_server_result.job_id            7Jb3YHqAOjWEHs1g_XPraQ 
_model_server_result.datetime_utc      '2024-10-19 22:24:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    5I9J 
#
_exptl.entry_id    5I9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5I9J 
_cell.length_a            83.39 
_cell.length_b            83.39 
_cell.length_c            82.19 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5I9J 
_atom_sites.fract_transf_matrix[1][1]    0.011992 
_atom_sites.fract_transf_matrix[1][2]    0.006923 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TLA A 1 501 1 TLA TLA . 
C 3 SO4 A 1 502 1 SO4 SO4 . 
D 4 EDO A 1 503 1 EDO EDO . 
E 4 EDO A 1 504 2 EDO EDO . 
F 4 EDO A 1 505 3 EDO EDO . 
G 5 HOH A 1 601 282 HOH HOH . 
G 5 HOH A 2 602 321 HOH HOH . 
G 5 HOH A 3 603 257 HOH HOH . 
G 5 HOH A 4 604 334 HOH HOH . 
G 5 HOH A 5 605 273 HOH HOH . 
G 5 HOH A 6 606 256 HOH HOH . 
G 5 HOH A 7 607 272 HOH HOH . 
G 5 HOH A 8 608 140 HOH HOH . 
G 5 HOH A 9 609 44 HOH HOH . 
G 5 HOH A 10 610 99 HOH HOH . 
G 5 HOH A 11 611 236 HOH HOH . 
G 5 HOH A 12 612 145 HOH HOH . 
G 5 HOH A 13 613 90 HOH HOH . 
G 5 HOH A 14 614 112 HOH HOH . 
G 5 HOH A 15 615 52 HOH HOH . 
G 5 HOH A 16 616 193 HOH HOH . 
G 5 HOH A 17 617 53 HOH HOH . 
G 5 HOH A 18 618 78 HOH HOH . 
G 5 HOH A 19 619 186 HOH HOH . 
G 5 HOH A 20 620 149 HOH HOH . 
G 5 HOH A 21 621 58 HOH HOH . 
G 5 HOH A 22 622 155 HOH HOH . 
G 5 HOH A 23 623 10 HOH HOH . 
G 5 HOH A 24 624 280 HOH HOH . 
G 5 HOH A 25 625 3 HOH HOH . 
G 5 HOH A 26 626 16 HOH HOH . 
G 5 HOH A 27 627 89 HOH HOH . 
G 5 HOH A 28 628 24 HOH HOH . 
G 5 HOH A 29 629 86 HOH HOH . 
G 5 HOH A 30 630 50 HOH HOH . 
G 5 HOH A 31 631 263 HOH HOH . 
G 5 HOH A 32 632 91 HOH HOH . 
G 5 HOH A 33 633 187 HOH HOH . 
G 5 HOH A 34 634 302 HOH HOH . 
G 5 HOH A 35 635 252 HOH HOH . 
G 5 HOH A 36 636 15 HOH HOH . 
G 5 HOH A 37 637 32 HOH HOH . 
G 5 HOH A 38 638 182 HOH HOH . 
G 5 HOH A 39 639 128 HOH HOH . 
G 5 HOH A 40 640 156 HOH HOH . 
G 5 HOH A 41 641 17 HOH HOH . 
G 5 HOH A 42 642 175 HOH HOH . 
G 5 HOH A 43 643 70 HOH HOH . 
G 5 HOH A 44 644 242 HOH HOH . 
G 5 HOH A 45 645 26 HOH HOH . 
G 5 HOH A 46 646 82 HOH HOH . 
G 5 HOH A 47 647 110 HOH HOH . 
G 5 HOH A 48 648 318 HOH HOH . 
G 5 HOH A 49 649 146 HOH HOH . 
G 5 HOH A 50 650 7 HOH HOH . 
G 5 HOH A 51 651 292 HOH HOH . 
G 5 HOH A 52 652 33 HOH HOH . 
G 5 HOH A 53 653 2 HOH HOH . 
G 5 HOH A 54 654 244 HOH HOH . 
G 5 HOH A 55 655 30 HOH HOH . 
G 5 HOH A 56 656 332 HOH HOH . 
G 5 HOH A 57 657 139 HOH HOH . 
G 5 HOH A 58 658 12 HOH HOH . 
G 5 HOH A 59 659 94 HOH HOH . 
G 5 HOH A 60 660 325 HOH HOH . 
G 5 HOH A 61 661 92 HOH HOH . 
G 5 HOH A 62 662 306 HOH HOH . 
G 5 HOH A 63 663 84 HOH HOH . 
G 5 HOH A 64 664 76 HOH HOH . 
G 5 HOH A 65 665 97 HOH HOH . 
G 5 HOH A 66 666 111 HOH HOH . 
G 5 HOH A 67 667 255 HOH HOH . 
G 5 HOH A 68 668 247 HOH HOH . 
G 5 HOH A 69 669 4 HOH HOH . 
G 5 HOH A 70 670 285 HOH HOH . 
G 5 HOH A 71 671 9 HOH HOH . 
G 5 HOH A 72 672 207 HOH HOH . 
G 5 HOH A 73 673 141 HOH HOH . 
G 5 HOH A 74 674 98 HOH HOH . 
G 5 HOH A 75 675 251 HOH HOH . 
G 5 HOH A 76 676 28 HOH HOH . 
G 5 HOH A 77 677 157 HOH HOH . 
G 5 HOH A 78 678 102 HOH HOH . 
G 5 HOH A 79 679 42 HOH HOH . 
G 5 HOH A 80 680 254 HOH HOH . 
G 5 HOH A 81 681 41 HOH HOH . 
G 5 HOH A 82 682 19 HOH HOH . 
G 5 HOH A 83 683 69 HOH HOH . 
G 5 HOH A 84 684 165 HOH HOH . 
G 5 HOH A 85 685 328 HOH HOH . 
G 5 HOH A 86 686 39 HOH HOH . 
G 5 HOH A 87 687 250 HOH HOH . 
G 5 HOH A 88 688 14 HOH HOH . 
G 5 HOH A 89 689 38 HOH HOH . 
G 5 HOH A 90 690 235 HOH HOH . 
G 5 HOH A 91 691 268 HOH HOH . 
G 5 HOH A 92 692 47 HOH HOH . 
G 5 HOH A 93 693 164 HOH HOH . 
G 5 HOH A 94 694 162 HOH HOH . 
G 5 HOH A 95 695 43 HOH HOH . 
G 5 HOH A 96 696 221 HOH HOH . 
G 5 HOH A 97 697 5 HOH HOH . 
G 5 HOH A 98 698 46 HOH HOH . 
G 5 HOH A 99 699 224 HOH HOH . 
G 5 HOH A 100 700 275 HOH HOH . 
G 5 HOH A 101 701 125 HOH HOH . 
G 5 HOH A 102 702 269 HOH HOH . 
G 5 HOH A 103 703 330 HOH HOH . 
G 5 HOH A 104 704 103 HOH HOH . 
G 5 HOH A 105 705 55 HOH HOH . 
G 5 HOH A 106 706 8 HOH HOH . 
G 5 HOH A 107 707 261 HOH HOH . 
G 5 HOH A 108 708 176 HOH HOH . 
G 5 HOH A 109 709 284 HOH HOH . 
G 5 HOH A 110 710 65 HOH HOH . 
G 5 HOH A 111 711 326 HOH HOH . 
G 5 HOH A 112 712 57 HOH HOH . 
G 5 HOH A 113 713 151 HOH HOH . 
G 5 HOH A 114 714 67 HOH HOH . 
G 5 HOH A 115 715 13 HOH HOH . 
G 5 HOH A 116 716 51 HOH HOH . 
G 5 HOH A 117 717 158 HOH HOH . 
G 5 HOH A 118 718 45 HOH HOH . 
G 5 HOH A 119 719 184 HOH HOH . 
G 5 HOH A 120 720 48 HOH HOH . 
G 5 HOH A 121 721 243 HOH HOH . 
G 5 HOH A 122 722 294 HOH HOH . 
G 5 HOH A 123 723 25 HOH HOH . 
G 5 HOH A 124 724 195 HOH HOH . 
G 5 HOH A 125 725 265 HOH HOH . 
G 5 HOH A 126 726 121 HOH HOH . 
G 5 HOH A 127 727 23 HOH HOH . 
G 5 HOH A 128 728 291 HOH HOH . 
G 5 HOH A 129 729 253 HOH HOH . 
G 5 HOH A 130 730 240 HOH HOH . 
G 5 HOH A 131 731 34 HOH HOH . 
G 5 HOH A 132 732 258 HOH HOH . 
G 5 HOH A 133 733 133 HOH HOH . 
G 5 HOH A 134 734 74 HOH HOH . 
G 5 HOH A 135 735 308 HOH HOH . 
G 5 HOH A 136 736 248 HOH HOH . 
G 5 HOH A 137 737 249 HOH HOH . 
G 5 HOH A 138 738 152 HOH HOH . 
G 5 HOH A 139 739 142 HOH HOH . 
G 5 HOH A 140 740 181 HOH HOH . 
G 5 HOH A 141 741 63 HOH HOH . 
G 5 HOH A 142 742 185 HOH HOH . 
G 5 HOH A 143 743 312 HOH HOH . 
G 5 HOH A 144 744 29 HOH HOH . 
G 5 HOH A 145 745 104 HOH HOH . 
G 5 HOH A 146 746 135 HOH HOH . 
G 5 HOH A 147 747 20 HOH HOH . 
G 5 HOH A 148 748 232 HOH HOH . 
G 5 HOH A 149 749 123 HOH HOH . 
G 5 HOH A 150 750 245 HOH HOH . 
G 5 HOH A 151 751 11 HOH HOH . 
G 5 HOH A 152 752 299 HOH HOH . 
G 5 HOH A 153 753 36 HOH HOH . 
G 5 HOH A 154 754 259 HOH HOH . 
G 5 HOH A 155 755 276 HOH HOH . 
G 5 HOH A 156 756 266 HOH HOH . 
G 5 HOH A 157 757 131 HOH HOH . 
G 5 HOH A 158 758 289 HOH HOH . 
G 5 HOH A 159 759 260 HOH HOH . 
G 5 HOH A 160 760 54 HOH HOH . 
G 5 HOH A 161 761 226 HOH HOH . 
G 5 HOH A 162 762 304 HOH HOH . 
G 5 HOH A 163 763 60 HOH HOH . 
G 5 HOH A 164 764 279 HOH HOH . 
G 5 HOH A 165 765 314 HOH HOH . 
G 5 HOH A 166 766 307 HOH HOH . 
G 5 HOH A 167 767 166 HOH HOH . 
G 5 HOH A 168 768 267 HOH HOH . 
G 5 HOH A 169 769 320 HOH HOH . 
G 5 HOH A 170 770 322 HOH HOH . 
G 5 HOH A 171 771 329 HOH HOH . 
G 5 HOH A 172 772 211 HOH HOH . 
G 5 HOH A 173 773 333 HOH HOH . 
G 5 HOH A 174 774 120 HOH HOH . 
G 5 HOH A 175 775 319 HOH HOH . 
G 5 HOH A 176 776 77 HOH HOH . 
G 5 HOH A 177 777 217 HOH HOH . 
G 5 HOH A 178 778 171 HOH HOH . 
G 5 HOH A 179 779 68 HOH HOH . 
G 5 HOH A 180 780 208 HOH HOH . 
G 5 HOH A 181 781 136 HOH HOH . 
G 5 HOH A 182 782 72 HOH HOH . 
G 5 HOH A 183 783 286 HOH HOH . 
G 5 HOH A 184 784 313 HOH HOH . 
G 5 HOH A 185 785 83 HOH HOH . 
G 5 HOH A 186 786 169 HOH HOH . 
G 5 HOH A 187 787 194 HOH HOH . 
G 5 HOH A 188 788 113 HOH HOH . 
G 5 HOH A 189 789 317 HOH HOH . 
G 5 HOH A 190 790 190 HOH HOH . 
G 5 HOH A 191 791 126 HOH HOH . 
G 5 HOH A 192 792 290 HOH HOH . 
G 5 HOH A 193 793 71 HOH HOH . 
G 5 HOH A 194 794 31 HOH HOH . 
G 5 HOH A 195 795 196 HOH HOH . 
G 5 HOH A 196 796 116 HOH HOH . 
G 5 HOH A 197 797 134 HOH HOH . 
G 5 HOH A 198 798 287 HOH HOH . 
G 5 HOH A 199 799 159 HOH HOH . 
G 5 HOH A 200 800 100 HOH HOH . 
G 5 HOH A 201 801 337 HOH HOH . 
G 5 HOH A 202 802 107 HOH HOH . 
G 5 HOH A 203 803 168 HOH HOH . 
G 5 HOH A 204 804 64 HOH HOH . 
G 5 HOH A 205 805 56 HOH HOH . 
G 5 HOH A 206 806 66 HOH HOH . 
G 5 HOH A 207 807 180 HOH HOH . 
G 5 HOH A 208 808 115 HOH HOH . 
G 5 HOH A 209 809 218 HOH HOH . 
G 5 HOH A 210 810 202 HOH HOH . 
G 5 HOH A 211 811 170 HOH HOH . 
G 5 HOH A 212 812 93 HOH HOH . 
G 5 HOH A 213 813 191 HOH HOH . 
G 5 HOH A 214 814 324 HOH HOH . 
G 5 HOH A 215 815 323 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 23.457 39.243 27.922 1 55.41 ? C1 EDO 504 A 1 
HETATM 2 O O1 EDO . . . E 4 22.443 38.882 28.858 1 46.96 ? O1 EDO 504 A 1 
HETATM 3 C C2 EDO . . . E 4 24.808 38.8 28.458 1 36.18 ? C2 EDO 504 A 1 
HETATM 4 O O2 EDO . . . E 4 24.937 39.313 29.768 1 27.92 ? O2 EDO 504 A 1 
HETATM 5 H H11 EDO . . . E 4 23.263 38.762 26.961 1 66.5 ? H11 EDO 504 A 1 
HETATM 6 H H12 EDO . . . E 4 23.454 40.325 27.77 1 66.5 ? H12 EDO 504 A 1 
HETATM 7 H HO1 EDO . . . E 4 21.58 39.162 28.522 1 56.36 ? HO1 EDO 504 A 1 
HETATM 8 H H21 EDO . . . E 4 24.867 37.71 28.473 1 43.41 ? H21 EDO 504 A 1 
HETATM 9 H H22 EDO . . . E 4 25.609 39.184 27.823 1 43.41 ? H22 EDO 504 A 1 
HETATM 10 H HO2 EDO . . . E 4 25.79 39.046 30.136 1 33.51 ? HO2 EDO 504 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#