data_5I9K
#
_model_server_result.job_id            wUMG980efI3uZixsdn97bg 
_model_server_result.datetime_utc      '2024-11-17 17:33:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i9k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5I9K 
#
_exptl.entry_id    5I9K 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5I9K 
_cell.length_a            81.8 
_cell.length_b            81.8 
_cell.length_c            100 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I9K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 81.8 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 40.9 70.840878 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
_atom_sites.entry_id                     5I9K 
_atom_sites.fract_transf_matrix[1][1]    0.012225 
_atom_sites.fract_transf_matrix[1][2]    0.007058 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GSH A 1 201 200 GSH GTT . 
C 3 PC1 A 1 202 300 PC1 PC2 . 
D 3 PC1 A 1 203 400 PC1 PC2 . 
E 4 PLM A 1 204 500 PLM PLM . 
F 4 PLM A 1 205 700 PLM PLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . C 3 14.805 12.549 -19.598 1 20 ? O12 PC1 202 A 1 
HETATM 2 P P PC1 . . . C 3 13.876 13.734 -19.341 1 20 ? P PC1 202 A 1 
HETATM 3 O O14 PC1 . . . C 3 12.517 13.518 -18.678 1 20 ? O14 PC1 202 A 1 
HETATM 4 O O13 PC1 . . . C 3 13.675 14.487 -20.798 1 20 ? O13 PC1 202 A 1 
HETATM 5 C C11 PC1 . . . C 3 13.62 13.772 -22.076 1 20 ? C11 PC1 202 A 1 
HETATM 6 C C12 PC1 . . . C 3 14.192 14.597 -23.27 1 20 ? C12 PC1 202 A 1 
HETATM 7 N N PC1 . . . C 3 15.248 13.938 -24.111 1 20 ? N PC1 202 A 1 
HETATM 8 C C13 PC1 . . . C 3 15.006 14.146 -25.557 1 20 ? C13 PC1 202 A 1 
HETATM 9 C C14 PC1 . . . C 3 15.309 12.47 -23.878 1 20 ? C14 PC1 202 A 1 
HETATM 10 C C15 PC1 . . . C 3 16.563 14.573 -23.861 1 20 ? C15 PC1 202 A 1 
HETATM 11 O O11 PC1 . . . C 3 14.775 14.658 -18.331 1 20 ? O11 PC1 202 A 1 
HETATM 12 C C1 PC1 . . . C 3 15.606 14.047 -17.301 1 20 ? C1 PC1 202 A 1 
HETATM 13 C C2 PC1 . . . C 3 14.913 13.849 -15.929 1 20 ? C2 PC1 202 A 1 
HETATM 14 O O21 PC1 . . . C 3 13.994 14.934 -15.674 1 20 ? O21 PC1 202 A 1 
HETATM 15 C C21 PC1 . . . C 3 14.438 16.025 -14.807 1 20 ? C21 PC1 202 A 1 
HETATM 16 O O22 PC1 . . . C 3 14.981 15.761 -13.74 1 20 ? O22 PC1 202 A 1 
HETATM 17 C C22 PC1 . . . C 3 14.203 17.454 -15.228 1 19.85 ? C22 PC1 202 A 1 
HETATM 18 C C23 PC1 . . . C 3 14.305 18.217 -13.924 1 19.58 ? C23 PC1 202 A 1 
HETATM 19 C C24 PC1 . . . C 3 14.757 19.638 -14.212 1 20 ? C24 PC1 202 A 1 
HETATM 20 C C25 PC1 . . . C 3 14.789 20.447 -12.917 1 20 ? C25 PC1 202 A 1 
HETATM 21 C C26 PC1 . . . C 3 13.647 21.45 -12.933 1 20 ? C26 PC1 202 A 1 
HETATM 22 C C27 PC1 . . . C 3 14.155 22.785 -13.463 1 20 ? C27 PC1 202 A 1 
HETATM 23 C C28 PC1 . . . C 3 14.309 22.856 -14.986 1 20 ? C28 PC1 202 A 1 
HETATM 24 C C29 PC1 . . . C 3 14.4 24.329 -15.435 1 20 ? C29 PC1 202 A 1 
HETATM 25 C C2A PC1 . . . C 3 15.807 24.966 -15.428 1 20 ? C2A PC1 202 A 1 
HETATM 26 C C2B PC1 . . . C 3 15.83 26.432 -14.96 1 20 ? C2B PC1 202 A 1 
HETATM 27 C C2C PC1 . . . C 3 15.025 26.676 -13.665 1 20 ? C2C PC1 202 A 1 
HETATM 28 C C2D PC1 . . . C 3 15.689 27.659 -12.676 1 20 ? C2D PC1 202 A 1 
HETATM 29 C C2E PC1 . . . C 3 16.285 26.941 -11.442 1 20 ? C2E PC1 202 A 1 
HETATM 30 C C2F PC1 . . . C 3 17.542 27.655 -10.889 1 20 ? C2F PC1 202 A 1 
HETATM 31 C C2G PC1 . . . C 3 17.739 27.434 -9.381 1 20 ? C2G PC1 202 A 1 
HETATM 32 C C2H PC1 . . . C 3 18.366 28.682 -8.734 1 20 ? C2H PC1 202 A 1 
HETATM 33 C C2I PC1 . . . C 3 18.887 28.431 -7.326 1 20 ? C2I PC1 202 A 1 
HETATM 34 C C3 PC1 . . . C 3 14.151 12.503 -15.833 1 20 ? C3 PC1 202 A 1 
HETATM 35 O O31 PC1 . . . C 3 13.393 12.39 -14.6 1 20 ? O31 PC1 202 A 1 
HETATM 36 C C31 PC1 . . . C 3 14.031 12.129 -13.27 1 20 ? C31 PC1 202 A 1 
HETATM 37 O O32 PC1 . . . C 3 14.884 11.244 -13.202 1 20 ? O32 PC1 202 A 1 
HETATM 38 C C32 PC1 . . . C 3 13.648 12.942 -12.008 1 20 ? C32 PC1 202 A 1 
HETATM 39 C C33 PC1 . . . C 3 14.547 12.722 -10.752 1 20 ? C33 PC1 202 A 1 
HETATM 40 C C34 PC1 . . . C 3 15.462 13.93 -10.37 1 20 ? C34 PC1 202 A 1 
HETATM 41 C C35 PC1 . . . C 3 15.301 14.532 -8.956 1 20 ? C35 PC1 202 A 1 
HETATM 42 C C36 PC1 . . . C 3 15.748 13.575 -7.833 1 20 ? C36 PC1 202 A 1 
HETATM 43 C C37 PC1 . . . C 3 16.19 14.244 -6.512 1 20 ? C37 PC1 202 A 1 
HETATM 44 C C38 PC1 . . . C 3 17.529 13.631 -5.971 1 20 ? C38 PC1 202 A 1 
HETATM 45 C C39 PC1 . . . C 3 17.875 13.992 -4.51 1 20 ? C39 PC1 202 A 1 
HETATM 46 C C3A PC1 . . . C 3 18.454 15.416 -4.289 1 20 ? C3A PC1 202 A 1 
HETATM 47 C C3B PC1 . . . C 3 18.805 15.557 -2.797 1 20 ? C3B PC1 202 A 1 
HETATM 48 C C3C PC1 . . . C 3 19.116 16.99 -2.38 1 20 ? C3C PC1 202 A 1 
HETATM 49 C C3D PC1 . . . C 3 20.23 16.994 -1.324 1 20 ? C3D PC1 202 A 1 
HETATM 50 C C3E PC1 . . . C 3 19.825 16.941 0.155 1 20 ? C3E PC1 202 A 1 
HETATM 51 C C3F PC1 . . . C 3 18.475 17.578 0.417 1 20 ? C3F PC1 202 A 1 
HETATM 52 C C3G PC1 . . . C 3 17.74 16.827 1.513 1 20 ? C3G PC1 202 A 1 
HETATM 53 C C3H PC1 . . . C 3 16.468 17.593 1.869 1 20 ? C3H PC1 202 A 1 
HETATM 54 C C3I PC1 . . . C 3 16.734 18.99 2.41 1 20 ? C3I PC1 202 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           54 
#