data_5I9L # _model_server_result.job_id 5kdFgaBBFSeea1EdCRdpWg _model_server_result.datetime_utc '2024-12-02 14:30:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5I9L # _exptl.entry_id 5I9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I9L _cell.length_a 74.579 _cell.length_b 75.063 _cell.length_c 86.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 283 n n PA O2A NAD sing 284 n n PA O5B NAD sing 285 n n PA O3 NAD sing 286 n n O2A HOA2 NAD sing 287 n n O5B C5B NAD sing 288 n n C5B C4B NAD sing 289 n n C5B H51A NAD sing 290 n n C5B H52A NAD sing 291 n n C4B O4B NAD sing 292 n n C4B C3B NAD sing 293 n n C4B H4B NAD sing 294 n n O4B C1B NAD sing 295 n n C3B O3B NAD sing 296 n n C3B C2B NAD sing 297 n n C3B H3B NAD sing 298 n n O3B HO3A NAD sing 299 n n C2B O2B NAD sing 300 n n C2B C1B NAD sing 301 n n C2B H2B NAD sing 302 n n O2B HO2A NAD sing 303 n n C1B N9A NAD sing 304 n n C1B H1B NAD sing 305 n n N9A C8A NAD sing 306 n y N9A C4A NAD sing 307 n y C8A N7A NAD doub 308 n y C8A H8A NAD sing 309 n n N7A C5A NAD sing 310 n y C5A C6A NAD sing 311 n y C5A C4A NAD doub 312 n y C6A N6A NAD sing 313 n n C6A N1A NAD doub 314 n y N6A H61A NAD sing 315 n n N6A H62A NAD sing 316 n n N1A C2A NAD sing 317 n y C2A N3A NAD doub 318 n y C2A H2A NAD sing 319 n n N3A C4A NAD sing 320 n y O3 PN NAD sing 321 n n PN O1N NAD doub 322 n n PN O2N NAD sing 323 n n PN O5D NAD sing 324 n n O5D C5D NAD sing 325 n n C5D C4D NAD sing 326 n n C5D H51N NAD sing 327 n n C5D H52N NAD sing 328 n n C4D O4D NAD sing 329 n n C4D C3D NAD sing 330 n n C4D H4D NAD sing 331 n n O4D C1D NAD sing 332 n n C3D O3D NAD sing 333 n n C3D C2D NAD sing 334 n n C3D H3D NAD sing 335 n n O3D HO3N NAD sing 336 n n C2D O2D NAD sing 337 n n C2D C1D NAD sing 338 n n C2D H2D NAD sing 339 n n O2D HO2N NAD sing 340 n n C1D N1N NAD sing 341 n n C1D H1D NAD sing 342 n n N1N C2N NAD sing 343 n y N1N C6N NAD doub 344 n y C2N C3N NAD doub 345 n y C2N H2N NAD sing 346 n n C3N C7N NAD sing 347 n n C3N C4N NAD sing 348 n y C7N O7N NAD doub 349 n n C7N N7N NAD sing 350 n n N7N H71N NAD sing 351 n n N7N H72N NAD sing 352 n n C4N C5N NAD doub 353 n y C4N H4N NAD sing 354 n n C5N C6N NAD sing 355 n y C5N H5N NAD sing 356 n n C6N H6N NAD sing 357 n n # _atom_sites.entry_id 5I9L _atom_sites.fract_transf_matrix[1][1] 0.013409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 9W7 A 1 302 1 9W7 404 . D 4 GOL A 1 303 0 GOL GOL . E 5 HOH A 1 401 31 HOH HOH . E 5 HOH A 2 402 58 HOH HOH . E 5 HOH A 3 403 146 HOH HOH . E 5 HOH A 4 404 23 HOH HOH . E 5 HOH A 5 405 107 HOH HOH . E 5 HOH A 6 406 28 HOH HOH . E 5 HOH A 7 407 143 HOH HOH . E 5 HOH A 8 408 66 HOH HOH . E 5 HOH A 9 409 67 HOH HOH . E 5 HOH A 10 410 59 HOH HOH . E 5 HOH A 11 411 77 HOH HOH . E 5 HOH A 12 412 89 HOH HOH . E 5 HOH A 13 413 79 HOH HOH . E 5 HOH A 14 414 133 HOH HOH . E 5 HOH A 15 415 65 HOH HOH . E 5 HOH A 16 416 48 HOH HOH . E 5 HOH A 17 417 149 HOH HOH . E 5 HOH A 18 418 11 HOH HOH . E 5 HOH A 19 419 128 HOH HOH . E 5 HOH A 20 420 54 HOH HOH . E 5 HOH A 21 421 42 HOH HOH . E 5 HOH A 22 422 83 HOH HOH . E 5 HOH A 23 423 18 HOH HOH . E 5 HOH A 24 424 153 HOH HOH . E 5 HOH A 25 425 92 HOH HOH . E 5 HOH A 26 426 120 HOH HOH . E 5 HOH A 27 427 85 HOH HOH . E 5 HOH A 28 428 82 HOH HOH . E 5 HOH A 29 429 41 HOH HOH . E 5 HOH A 30 430 6 HOH HOH . E 5 HOH A 31 431 12 HOH HOH . E 5 HOH A 32 432 51 HOH HOH . E 5 HOH A 33 433 37 HOH HOH . E 5 HOH A 34 434 117 HOH HOH . E 5 HOH A 35 435 8 HOH HOH . E 5 HOH A 36 436 91 HOH HOH . E 5 HOH A 37 437 135 HOH HOH . E 5 HOH A 38 438 39 HOH HOH . E 5 HOH A 39 439 24 HOH HOH . E 5 HOH A 40 440 69 HOH HOH . E 5 HOH A 41 441 115 HOH HOH . E 5 HOH A 42 442 57 HOH HOH . E 5 HOH A 43 443 71 HOH HOH . E 5 HOH A 44 444 17 HOH HOH . E 5 HOH A 45 445 68 HOH HOH . E 5 HOH A 46 446 38 HOH HOH . E 5 HOH A 47 447 148 HOH HOH . E 5 HOH A 48 448 140 HOH HOH . E 5 HOH A 49 449 105 HOH HOH . E 5 HOH A 50 450 94 HOH HOH . E 5 HOH A 51 451 1 HOH HOH . E 5 HOH A 52 452 35 HOH HOH . E 5 HOH A 53 453 110 HOH HOH . E 5 HOH A 54 454 47 HOH HOH . E 5 HOH A 55 455 119 HOH HOH . E 5 HOH A 56 456 13 HOH HOH . E 5 HOH A 57 457 76 HOH HOH . E 5 HOH A 58 458 97 HOH HOH . E 5 HOH A 59 459 116 HOH HOH . E 5 HOH A 60 460 139 HOH HOH . E 5 HOH A 61 461 10 HOH HOH . E 5 HOH A 62 462 20 HOH HOH . E 5 HOH A 63 463 21 HOH HOH . E 5 HOH A 64 464 40 HOH HOH . E 5 HOH A 65 465 90 HOH HOH . E 5 HOH A 66 466 81 HOH HOH . E 5 HOH A 67 467 112 HOH HOH . E 5 HOH A 68 468 19 HOH HOH . E 5 HOH A 69 469 3 HOH HOH . E 5 HOH A 70 470 7 HOH HOH . E 5 HOH A 71 471 144 HOH HOH . E 5 HOH A 72 472 29 HOH HOH . E 5 HOH A 73 473 4 HOH HOH . E 5 HOH A 74 474 96 HOH HOH . E 5 HOH A 75 475 64 HOH HOH . E 5 HOH A 76 476 106 HOH HOH . E 5 HOH A 77 477 53 HOH HOH . E 5 HOH A 78 478 36 HOH HOH . E 5 HOH A 79 479 46 HOH HOH . E 5 HOH A 80 480 147 HOH HOH . E 5 HOH A 81 481 101 HOH HOH . E 5 HOH A 82 482 70 HOH HOH . E 5 HOH A 83 483 34 HOH HOH . E 5 HOH A 84 484 9 HOH HOH . E 5 HOH A 85 485 14 HOH HOH . E 5 HOH A 86 486 45 HOH HOH . E 5 HOH A 87 487 32 HOH HOH . E 5 HOH A 88 488 61 HOH HOH . E 5 HOH A 89 489 43 HOH HOH . E 5 HOH A 90 490 30 HOH HOH . E 5 HOH A 91 491 5 HOH HOH . E 5 HOH A 92 492 33 HOH HOH . E 5 HOH A 93 493 25 HOH HOH . E 5 HOH A 94 494 130 HOH HOH . E 5 HOH A 95 495 49 HOH HOH . E 5 HOH A 96 496 15 HOH HOH . E 5 HOH A 97 497 2 HOH HOH . E 5 HOH A 98 498 56 HOH HOH . E 5 HOH A 99 499 16 HOH HOH . E 5 HOH A 100 500 44 HOH HOH . E 5 HOH A 101 501 62 HOH HOH . E 5 HOH A 102 502 27 HOH HOH . E 5 HOH A 103 503 84 HOH HOH . E 5 HOH A 104 504 63 HOH HOH . E 5 HOH A 105 505 87 HOH HOH . E 5 HOH A 106 506 78 HOH HOH . E 5 HOH A 107 507 113 HOH HOH . E 5 HOH A 108 508 136 HOH HOH . E 5 HOH A 109 509 134 HOH HOH . E 5 HOH A 110 510 126 HOH HOH . E 5 HOH A 111 511 104 HOH HOH . E 5 HOH A 112 512 93 HOH HOH . E 5 HOH A 113 513 122 HOH HOH . E 5 HOH A 114 514 26 HOH HOH . E 5 HOH A 115 515 141 HOH HOH . E 5 HOH A 116 516 74 HOH HOH . E 5 HOH A 117 517 50 HOH HOH . E 5 HOH A 118 518 55 HOH HOH . E 5 HOH A 119 519 150 HOH HOH . E 5 HOH A 120 520 111 HOH HOH . E 5 HOH A 121 521 125 HOH HOH . E 5 HOH A 122 522 95 HOH HOH . E 5 HOH A 123 523 121 HOH HOH . E 5 HOH A 124 524 145 HOH HOH . E 5 HOH A 125 525 123 HOH HOH . E 5 HOH A 126 526 102 HOH HOH . E 5 HOH A 127 527 103 HOH HOH . E 5 HOH A 128 528 108 HOH HOH . E 5 HOH A 129 529 124 HOH HOH . E 5 HOH A 130 530 127 HOH HOH . E 5 HOH A 131 531 152 HOH HOH . E 5 HOH A 132 532 138 HOH HOH . E 5 HOH A 133 533 22 HOH HOH . E 5 HOH A 134 534 151 HOH HOH . E 5 HOH A 135 535 131 HOH HOH . E 5 HOH A 136 536 99 HOH HOH . E 5 HOH A 137 537 52 HOH HOH . E 5 HOH A 138 538 80 HOH HOH . E 5 HOH A 139 539 137 HOH HOH . E 5 HOH A 140 540 98 HOH HOH . E 5 HOH A 141 541 129 HOH HOH . E 5 HOH A 142 542 114 HOH HOH . E 5 HOH A 143 543 109 HOH HOH . E 5 HOH A 144 544 72 HOH HOH . E 5 HOH A 145 545 86 HOH HOH . E 5 HOH A 146 546 75 HOH HOH . E 5 HOH A 147 547 142 HOH HOH . E 5 HOH A 148 548 88 HOH HOH . E 5 HOH A 149 549 118 HOH HOH . E 5 HOH A 150 550 132 HOH HOH . E 5 HOH A 151 551 60 HOH HOH . E 5 HOH A 152 552 73 HOH HOH . E 5 HOH A 153 553 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 16.575 12.189 -18.546 1 43.65 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 16.045 13.075 -19.663 1 40.38 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 17.981 12.638 -18.121 1 48.03 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 16.599 10.696 -19.003 1 45.47 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 15.596 10.182 -19.779 1 43.19 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 15.985 9.245 -20.767 1 43.78 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 14.835 8.707 -21.527 1 41.46 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 16.847 9.887 -21.785 1 42.77 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 18.146 9.437 -21.664 1 45.88 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 16.255 9.467 -23.076 1 46.01 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 17.211 9.172 -24.001 1 37.58 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 15.437 8.273 -22.711 1 44.08 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 14.519 7.845 -23.772 1 44.69 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 13.387 8.45 -24.17 1 41.89 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 12.851 7.744 -25.192 1 37.86 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 13.653 6.677 -25.454 1 36.94 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 13.634 5.604 -26.367 1 33.5 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 12.55 5.502 -27.324 1 32.49 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 14.618 4.679 -26.364 1 34.17 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 15.606 4.784 -25.479 1 33.49 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 15.664 5.794 -24.588 1 34.9 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 14.714 6.746 -24.549 1 36.38 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 15.584 12.366 -17.297 1 45.98 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 15.62 11.437 -16.058 1 40 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 14.949 12.192 -14.924 1 42.91 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 17.029 11.037 -15.644 1 36.44 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 14.719 10.142 -16.422 1 38.47 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 15.1 8.875 -16.034 1 38.65 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 14.075 8.056 -15.403 1 32.59 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 13.86 8.548 -14.119 1 33.79 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 12.772 8.181 -16.153 1 31.48 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 12.241 6.919 -16.235 1 29.69 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 11.92 9.08 -15.344 1 26.89 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 10.627 8.771 -15.57 1 32.91 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 12.387 8.738 -13.974 1 27.67 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 11.96 9.383 -12.752 1 30.99 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 12.512 10.586 -13.05 1 35.64 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 12.387 11.573 -12.098 1 36.41 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 12.906 12.98 -12.229 1 43.25 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 12.545 13.789 -11.383 1 37.03 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 13.771 13.368 -13.225 1 37.5 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 11.76 11.38 -10.905 1 35.09 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 11.253 10.162 -10.665 1 31.75 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 11.36 9.177 -11.573 1 36.08 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #