data_5I9L # _model_server_result.job_id msfEtDdMmAiNTU4o09Mlew _model_server_result.datetime_utc '2024-12-03 12:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5I9L # _exptl.entry_id 5I9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I9L _cell.length_a 74.579 _cell.length_b 75.063 _cell.length_c 86.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 5I9L _atom_sites.fract_transf_matrix[1][1] 0.013409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 9W7 A 1 302 1 9W7 404 . D 4 GOL A 1 303 0 GOL GOL . E 5 HOH A 1 401 31 HOH HOH . E 5 HOH A 2 402 58 HOH HOH . E 5 HOH A 3 403 146 HOH HOH . E 5 HOH A 4 404 23 HOH HOH . E 5 HOH A 5 405 107 HOH HOH . E 5 HOH A 6 406 28 HOH HOH . E 5 HOH A 7 407 143 HOH HOH . E 5 HOH A 8 408 66 HOH HOH . E 5 HOH A 9 409 67 HOH HOH . E 5 HOH A 10 410 59 HOH HOH . E 5 HOH A 11 411 77 HOH HOH . E 5 HOH A 12 412 89 HOH HOH . E 5 HOH A 13 413 79 HOH HOH . E 5 HOH A 14 414 133 HOH HOH . E 5 HOH A 15 415 65 HOH HOH . E 5 HOH A 16 416 48 HOH HOH . E 5 HOH A 17 417 149 HOH HOH . E 5 HOH A 18 418 11 HOH HOH . E 5 HOH A 19 419 128 HOH HOH . E 5 HOH A 20 420 54 HOH HOH . E 5 HOH A 21 421 42 HOH HOH . E 5 HOH A 22 422 83 HOH HOH . E 5 HOH A 23 423 18 HOH HOH . E 5 HOH A 24 424 153 HOH HOH . E 5 HOH A 25 425 92 HOH HOH . E 5 HOH A 26 426 120 HOH HOH . E 5 HOH A 27 427 85 HOH HOH . E 5 HOH A 28 428 82 HOH HOH . E 5 HOH A 29 429 41 HOH HOH . E 5 HOH A 30 430 6 HOH HOH . E 5 HOH A 31 431 12 HOH HOH . E 5 HOH A 32 432 51 HOH HOH . E 5 HOH A 33 433 37 HOH HOH . E 5 HOH A 34 434 117 HOH HOH . E 5 HOH A 35 435 8 HOH HOH . E 5 HOH A 36 436 91 HOH HOH . E 5 HOH A 37 437 135 HOH HOH . E 5 HOH A 38 438 39 HOH HOH . E 5 HOH A 39 439 24 HOH HOH . E 5 HOH A 40 440 69 HOH HOH . E 5 HOH A 41 441 115 HOH HOH . E 5 HOH A 42 442 57 HOH HOH . E 5 HOH A 43 443 71 HOH HOH . E 5 HOH A 44 444 17 HOH HOH . E 5 HOH A 45 445 68 HOH HOH . E 5 HOH A 46 446 38 HOH HOH . E 5 HOH A 47 447 148 HOH HOH . E 5 HOH A 48 448 140 HOH HOH . E 5 HOH A 49 449 105 HOH HOH . E 5 HOH A 50 450 94 HOH HOH . E 5 HOH A 51 451 1 HOH HOH . E 5 HOH A 52 452 35 HOH HOH . E 5 HOH A 53 453 110 HOH HOH . E 5 HOH A 54 454 47 HOH HOH . E 5 HOH A 55 455 119 HOH HOH . E 5 HOH A 56 456 13 HOH HOH . E 5 HOH A 57 457 76 HOH HOH . E 5 HOH A 58 458 97 HOH HOH . E 5 HOH A 59 459 116 HOH HOH . E 5 HOH A 60 460 139 HOH HOH . E 5 HOH A 61 461 10 HOH HOH . E 5 HOH A 62 462 20 HOH HOH . E 5 HOH A 63 463 21 HOH HOH . E 5 HOH A 64 464 40 HOH HOH . E 5 HOH A 65 465 90 HOH HOH . E 5 HOH A 66 466 81 HOH HOH . E 5 HOH A 67 467 112 HOH HOH . E 5 HOH A 68 468 19 HOH HOH . E 5 HOH A 69 469 3 HOH HOH . E 5 HOH A 70 470 7 HOH HOH . E 5 HOH A 71 471 144 HOH HOH . E 5 HOH A 72 472 29 HOH HOH . E 5 HOH A 73 473 4 HOH HOH . E 5 HOH A 74 474 96 HOH HOH . E 5 HOH A 75 475 64 HOH HOH . E 5 HOH A 76 476 106 HOH HOH . E 5 HOH A 77 477 53 HOH HOH . E 5 HOH A 78 478 36 HOH HOH . E 5 HOH A 79 479 46 HOH HOH . E 5 HOH A 80 480 147 HOH HOH . E 5 HOH A 81 481 101 HOH HOH . E 5 HOH A 82 482 70 HOH HOH . E 5 HOH A 83 483 34 HOH HOH . E 5 HOH A 84 484 9 HOH HOH . E 5 HOH A 85 485 14 HOH HOH . E 5 HOH A 86 486 45 HOH HOH . E 5 HOH A 87 487 32 HOH HOH . E 5 HOH A 88 488 61 HOH HOH . E 5 HOH A 89 489 43 HOH HOH . E 5 HOH A 90 490 30 HOH HOH . E 5 HOH A 91 491 5 HOH HOH . E 5 HOH A 92 492 33 HOH HOH . E 5 HOH A 93 493 25 HOH HOH . E 5 HOH A 94 494 130 HOH HOH . E 5 HOH A 95 495 49 HOH HOH . E 5 HOH A 96 496 15 HOH HOH . E 5 HOH A 97 497 2 HOH HOH . E 5 HOH A 98 498 56 HOH HOH . E 5 HOH A 99 499 16 HOH HOH . E 5 HOH A 100 500 44 HOH HOH . E 5 HOH A 101 501 62 HOH HOH . E 5 HOH A 102 502 27 HOH HOH . E 5 HOH A 103 503 84 HOH HOH . E 5 HOH A 104 504 63 HOH HOH . E 5 HOH A 105 505 87 HOH HOH . E 5 HOH A 106 506 78 HOH HOH . E 5 HOH A 107 507 113 HOH HOH . E 5 HOH A 108 508 136 HOH HOH . E 5 HOH A 109 509 134 HOH HOH . E 5 HOH A 110 510 126 HOH HOH . E 5 HOH A 111 511 104 HOH HOH . E 5 HOH A 112 512 93 HOH HOH . E 5 HOH A 113 513 122 HOH HOH . E 5 HOH A 114 514 26 HOH HOH . E 5 HOH A 115 515 141 HOH HOH . E 5 HOH A 116 516 74 HOH HOH . E 5 HOH A 117 517 50 HOH HOH . E 5 HOH A 118 518 55 HOH HOH . E 5 HOH A 119 519 150 HOH HOH . E 5 HOH A 120 520 111 HOH HOH . E 5 HOH A 121 521 125 HOH HOH . E 5 HOH A 122 522 95 HOH HOH . E 5 HOH A 123 523 121 HOH HOH . E 5 HOH A 124 524 145 HOH HOH . E 5 HOH A 125 525 123 HOH HOH . E 5 HOH A 126 526 102 HOH HOH . E 5 HOH A 127 527 103 HOH HOH . E 5 HOH A 128 528 108 HOH HOH . E 5 HOH A 129 529 124 HOH HOH . E 5 HOH A 130 530 127 HOH HOH . E 5 HOH A 131 531 152 HOH HOH . E 5 HOH A 132 532 138 HOH HOH . E 5 HOH A 133 533 22 HOH HOH . E 5 HOH A 134 534 151 HOH HOH . E 5 HOH A 135 535 131 HOH HOH . E 5 HOH A 136 536 99 HOH HOH . E 5 HOH A 137 537 52 HOH HOH . E 5 HOH A 138 538 80 HOH HOH . E 5 HOH A 139 539 137 HOH HOH . E 5 HOH A 140 540 98 HOH HOH . E 5 HOH A 141 541 129 HOH HOH . E 5 HOH A 142 542 114 HOH HOH . E 5 HOH A 143 543 109 HOH HOH . E 5 HOH A 144 544 72 HOH HOH . E 5 HOH A 145 545 86 HOH HOH . E 5 HOH A 146 546 75 HOH HOH . E 5 HOH A 147 547 142 HOH HOH . E 5 HOH A 148 548 88 HOH HOH . E 5 HOH A 149 549 118 HOH HOH . E 5 HOH A 150 550 132 HOH HOH . E 5 HOH A 151 551 60 HOH HOH . E 5 HOH A 152 552 73 HOH HOH . E 5 HOH A 153 553 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 27.53 10.87 0.689 1 56.04 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 27.937 11.984 1.463 1 56.43 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 28.651 9.833 0.678 1 56.78 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 29.421 9.967 1.856 1 67.55 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 28.095 8.416 0.618 1 52.53 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 29.065 7.528 1.133 1 51.54 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #