data_5I9N # _model_server_result.job_id YDt43bfenPluTJcm64m3Xg _model_server_result.datetime_utc '2024-10-30 07:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5I9N # _exptl.entry_id 5I9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I9N _cell.length_a 72.63 _cell.length_b 74.67 _cell.length_c 96.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -74.67 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -74.67 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 270 n n PA O2A NAD sing 271 n n PA O5B NAD sing 272 n n PA O3 NAD sing 273 n n O2A HOA2 NAD sing 274 n n O5B C5B NAD sing 275 n n C5B C4B NAD sing 276 n n C5B H51A NAD sing 277 n n C5B H52A NAD sing 278 n n C4B O4B NAD sing 279 n n C4B C3B NAD sing 280 n n C4B H4B NAD sing 281 n n O4B C1B NAD sing 282 n n C3B O3B NAD sing 283 n n C3B C2B NAD sing 284 n n C3B H3B NAD sing 285 n n O3B HO3A NAD sing 286 n n C2B O2B NAD sing 287 n n C2B C1B NAD sing 288 n n C2B H2B NAD sing 289 n n O2B HO2A NAD sing 290 n n C1B N9A NAD sing 291 n n C1B H1B NAD sing 292 n n N9A C8A NAD sing 293 n y N9A C4A NAD sing 294 n y C8A N7A NAD doub 295 n y C8A H8A NAD sing 296 n n N7A C5A NAD sing 297 n y C5A C6A NAD sing 298 n y C5A C4A NAD doub 299 n y C6A N6A NAD sing 300 n n C6A N1A NAD doub 301 n y N6A H61A NAD sing 302 n n N6A H62A NAD sing 303 n n N1A C2A NAD sing 304 n y C2A N3A NAD doub 305 n y C2A H2A NAD sing 306 n n N3A C4A NAD sing 307 n y O3 PN NAD sing 308 n n PN O1N NAD doub 309 n n PN O2N NAD sing 310 n n PN O5D NAD sing 311 n n O5D C5D NAD sing 312 n n C5D C4D NAD sing 313 n n C5D H51N NAD sing 314 n n C5D H52N NAD sing 315 n n C4D O4D NAD sing 316 n n C4D C3D NAD sing 317 n n C4D H4D NAD sing 318 n n O4D C1D NAD sing 319 n n C3D O3D NAD sing 320 n n C3D C2D NAD sing 321 n n C3D H3D NAD sing 322 n n O3D HO3N NAD sing 323 n n C2D O2D NAD sing 324 n n C2D C1D NAD sing 325 n n C2D H2D NAD sing 326 n n O2D HO2N NAD sing 327 n n C1D N1N NAD sing 328 n n C1D H1D NAD sing 329 n n N1N C2N NAD sing 330 n y N1N C6N NAD doub 331 n y C2N C3N NAD doub 332 n y C2N H2N NAD sing 333 n n C3N C7N NAD sing 334 n n C3N C4N NAD sing 335 n y C7N O7N NAD doub 336 n n C7N N7N NAD sing 337 n n N7N H71N NAD sing 338 n n N7N H72N NAD sing 339 n n C4N C5N NAD doub 340 n y C4N H4N NAD sing 341 n n C5N C6N NAD sing 342 n y C5N H5N NAD sing 343 n n C6N H6N NAD sing 344 n n # _atom_sites.entry_id 5I9N _atom_sites.fract_transf_matrix[1][1] 0.013768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 69J A 1 302 1 69J 412 . D 4 HOH A 1 401 85 HOH HOH . D 4 HOH A 2 402 75 HOH HOH . D 4 HOH A 3 403 78 HOH HOH . D 4 HOH A 4 404 37 HOH HOH . D 4 HOH A 5 405 27 HOH HOH . D 4 HOH A 6 406 77 HOH HOH . D 4 HOH A 7 407 42 HOH HOH . D 4 HOH A 8 408 2 HOH HOH . D 4 HOH A 9 409 36 HOH HOH . D 4 HOH A 10 410 7 HOH HOH . D 4 HOH A 11 411 16 HOH HOH . D 4 HOH A 12 412 102 HOH HOH . D 4 HOH A 13 413 34 HOH HOH . D 4 HOH A 14 414 92 HOH HOH . D 4 HOH A 15 415 46 HOH HOH . D 4 HOH A 16 416 22 HOH HOH . D 4 HOH A 17 417 5 HOH HOH . D 4 HOH A 18 418 103 HOH HOH . D 4 HOH A 19 419 82 HOH HOH . D 4 HOH A 20 420 58 HOH HOH . D 4 HOH A 21 421 9 HOH HOH . D 4 HOH A 22 422 87 HOH HOH . D 4 HOH A 23 423 19 HOH HOH . D 4 HOH A 24 424 12 HOH HOH . D 4 HOH A 25 425 26 HOH HOH . D 4 HOH A 26 426 10 HOH HOH . D 4 HOH A 27 427 4 HOH HOH . D 4 HOH A 28 428 56 HOH HOH . D 4 HOH A 29 429 15 HOH HOH . D 4 HOH A 30 430 94 HOH HOH . D 4 HOH A 31 431 70 HOH HOH . D 4 HOH A 32 432 1 HOH HOH . D 4 HOH A 33 433 38 HOH HOH . D 4 HOH A 34 434 43 HOH HOH . D 4 HOH A 35 435 33 HOH HOH . D 4 HOH A 36 436 29 HOH HOH . D 4 HOH A 37 437 51 HOH HOH . D 4 HOH A 38 438 96 HOH HOH . D 4 HOH A 39 439 6 HOH HOH . D 4 HOH A 40 440 3 HOH HOH . D 4 HOH A 41 441 68 HOH HOH . D 4 HOH A 42 442 63 HOH HOH . D 4 HOH A 43 443 47 HOH HOH . D 4 HOH A 44 444 24 HOH HOH . D 4 HOH A 45 445 74 HOH HOH . D 4 HOH A 46 446 35 HOH HOH . D 4 HOH A 47 447 57 HOH HOH . D 4 HOH A 48 448 95 HOH HOH . D 4 HOH A 49 449 31 HOH HOH . D 4 HOH A 50 450 18 HOH HOH . D 4 HOH A 51 451 84 HOH HOH . D 4 HOH A 52 452 17 HOH HOH . D 4 HOH A 53 453 110 HOH HOH . D 4 HOH A 54 454 105 HOH HOH . D 4 HOH A 55 455 83 HOH HOH . D 4 HOH A 56 456 8 HOH HOH . D 4 HOH A 57 457 62 HOH HOH . D 4 HOH A 58 458 30 HOH HOH . D 4 HOH A 59 459 14 HOH HOH . D 4 HOH A 60 460 90 HOH HOH . D 4 HOH A 61 461 89 HOH HOH . D 4 HOH A 62 462 52 HOH HOH . D 4 HOH A 63 463 45 HOH HOH . D 4 HOH A 64 464 13 HOH HOH . D 4 HOH A 65 465 20 HOH HOH . D 4 HOH A 66 466 54 HOH HOH . D 4 HOH A 67 467 66 HOH HOH . D 4 HOH A 68 468 59 HOH HOH . D 4 HOH A 69 469 88 HOH HOH . D 4 HOH A 70 470 21 HOH HOH . D 4 HOH A 71 471 71 HOH HOH . D 4 HOH A 72 472 39 HOH HOH . D 4 HOH A 73 473 76 HOH HOH . D 4 HOH A 74 474 80 HOH HOH . D 4 HOH A 75 475 50 HOH HOH . D 4 HOH A 76 476 67 HOH HOH . D 4 HOH A 77 477 64 HOH HOH . D 4 HOH A 78 478 41 HOH HOH . D 4 HOH A 79 479 11 HOH HOH . D 4 HOH A 80 480 60 HOH HOH . D 4 HOH A 81 481 104 HOH HOH . D 4 HOH A 82 482 49 HOH HOH . D 4 HOH A 83 483 23 HOH HOH . D 4 HOH A 84 484 48 HOH HOH . D 4 HOH A 85 485 111 HOH HOH . D 4 HOH A 86 486 106 HOH HOH . D 4 HOH A 87 487 32 HOH HOH . D 4 HOH A 88 488 101 HOH HOH . D 4 HOH A 89 489 25 HOH HOH . D 4 HOH A 90 490 28 HOH HOH . D 4 HOH A 91 491 44 HOH HOH . D 4 HOH A 92 492 100 HOH HOH . D 4 HOH A 93 493 72 HOH HOH . D 4 HOH A 94 494 81 HOH HOH . D 4 HOH A 95 495 112 HOH HOH . D 4 HOH A 96 496 107 HOH HOH . D 4 HOH A 97 497 93 HOH HOH . D 4 HOH A 98 498 53 HOH HOH . D 4 HOH A 99 499 97 HOH HOH . D 4 HOH A 100 500 79 HOH HOH . D 4 HOH A 101 501 109 HOH HOH . D 4 HOH A 102 502 65 HOH HOH . D 4 HOH A 103 503 108 HOH HOH . D 4 HOH A 104 504 55 HOH HOH . D 4 HOH A 105 505 69 HOH HOH . D 4 HOH A 106 506 99 HOH HOH . D 4 HOH A 107 507 40 HOH HOH . D 4 HOH A 108 508 98 HOH HOH . D 4 HOH A 109 509 61 HOH HOH . D 4 HOH A 110 510 73 HOH HOH . D 4 HOH A 111 511 91 HOH HOH . D 4 HOH A 112 512 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 12.307 -20.888 18.744 1 27.28 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 13.072 -21.491 19.838 1 24.86 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 12.687 -19.507 18.506 1 33.19 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 10.8 -20.905 19.135 1 31.75 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 10.388 -21.936 20.082 1 26.07 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 9.393 -21.497 20.954 1 27.51 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 8.824 -22.593 21.705 1 28.04 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 9.961 -20.56 21.922 1 28.8 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 9.371 -19.278 21.711 1 25.21 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 9.551 -21.121 23.201 1 28.42 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 9.234 -20.153 24.1 1 27.21 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 8.351 -21.935 22.82 1 26.77 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 7.946 -22.846 23.855 1 21.08 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 8.626 -23.935 24.3 1 16.83 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 7.908 -24.49 25.302 1 17.35 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 6.76 -23.749 25.51 1 18.55 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 5.637 -23.817 26.399 1 23.35 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 5.55 -24.871 27.356 1 24.44 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 4.649 -22.885 26.332 1 26.67 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 4.739 -21.888 25.401 1 29.95 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 5.794 -21.798 24.539 1 25.4 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 6.799 -22.702 24.577 1 20.1 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 12.523 -21.794 17.402 1 41.55 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 11.513 -21.794 16.219 1 18.51 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 12.258 -22.329 15.046 1 19.99 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 11.018 -20.372 15.907 1 18.49 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 10.257 -22.672 16.587 1 26.14 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 8.924 -22.277 16.253 1 16.34 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 8.016 -23.266 15.586 1 21.51 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 8.398 -23.478 14.245 1 21.8 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 8.054 -24.582 16.25 1 20.68 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 6.798 -25.165 16.268 1 12.48 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 8.955 -25.375 15.456 1 24.52 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 8.656 -26.673 15.55 1 24.28 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 8.648 -24.885 14.094 1 27.2 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 9.6 -25.165 13.01 1 24.59 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 10.9 -24.784 13.134 1 22.26 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 11.791 -25.034 12.078 1 22.62 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 13.232 -24.61 12.181 1 23.81 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 14.063 -25.139 11.494 1 27.98 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 13.591 -23.577 13.067 1 22.34 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 11.343 -25.653 10.918 1 18.54 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 9.98 -26.028 10.825 1 18.48 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 9.139 -25.757 11.91 1 17.12 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #