data_5I9X
#
_model_server_result.job_id            GcmTZwWXnG4cAXel1XAwzg 
_model_server_result.datetime_utc      '2024-11-24 22:00:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i9x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    5I9X 
#
_exptl.entry_id    5I9X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     
;EDO from cryo 
soaking
;
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     2.7.10.1 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.95 
_cell.angle_gamma         90 
_cell.entry_id            5I9X 
_cell.length_a            32.803 
_cell.length_b            107.695 
_cell.length_c            40.604 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I9X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 151 n n 
C1 C2 EDO sing 152 n n 
C1 H11 EDO sing 153 n n 
C1 H12 EDO sing 154 n n 
O1 HO1 EDO sing 155 n n 
C2 O2 EDO sing 156 n n 
C2 H21 EDO sing 157 n n 
C2 H22 EDO sing 158 n n 
O2 HO2 EDO sing 159 n n 
#
_atom_sites.entry_id                     5I9X 
_atom_sites.fract_transf_matrix[1][1]    0.030485 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.010467 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DB8 A 1 1001 1001 DB8 DB8 . 
C 3 EDO A 1 1002 2001 EDO EDO . 
D 3 EDO A 1 1003 2002 EDO EDO . 
E 3 EDO A 1 1004 2003 EDO EDO . 
F 3 EDO A 1 1005 2004 EDO EDO . 
G 4 HOH A 1 1101 219 HOH HOH . 
G 4 HOH A 2 1102 190 HOH HOH . 
G 4 HOH A 3 1103 100 HOH HOH . 
G 4 HOH A 4 1104 227 HOH HOH . 
G 4 HOH A 5 1105 172 HOH HOH . 
G 4 HOH A 6 1106 221 HOH HOH . 
G 4 HOH A 7 1107 153 HOH HOH . 
G 4 HOH A 8 1108 142 HOH HOH . 
G 4 HOH A 9 1109 114 HOH HOH . 
G 4 HOH A 10 1110 72 HOH HOH . 
G 4 HOH A 11 1111 113 HOH HOH . 
G 4 HOH A 12 1112 193 HOH HOH . 
G 4 HOH A 13 1113 95 HOH HOH . 
G 4 HOH A 14 1114 176 HOH HOH . 
G 4 HOH A 15 1115 102 HOH HOH . 
G 4 HOH A 16 1116 1 HOH HOH . 
G 4 HOH A 17 1117 149 HOH HOH . 
G 4 HOH A 18 1118 183 HOH HOH . 
G 4 HOH A 19 1119 204 HOH HOH . 
G 4 HOH A 20 1120 112 HOH HOH . 
G 4 HOH A 21 1121 59 HOH HOH . 
G 4 HOH A 22 1122 69 HOH HOH . 
G 4 HOH A 23 1123 50 HOH HOH . 
G 4 HOH A 24 1124 116 HOH HOH . 
G 4 HOH A 25 1125 148 HOH HOH . 
G 4 HOH A 26 1126 146 HOH HOH . 
G 4 HOH A 27 1127 156 HOH HOH . 
G 4 HOH A 28 1128 12 HOH HOH . 
G 4 HOH A 29 1129 186 HOH HOH . 
G 4 HOH A 30 1130 115 HOH HOH . 
G 4 HOH A 31 1131 161 HOH HOH . 
G 4 HOH A 32 1132 215 HOH HOH . 
G 4 HOH A 33 1133 81 HOH HOH . 
G 4 HOH A 34 1134 88 HOH HOH . 
G 4 HOH A 35 1135 65 HOH HOH . 
G 4 HOH A 36 1136 43 HOH HOH . 
G 4 HOH A 37 1137 27 HOH HOH . 
G 4 HOH A 38 1138 191 HOH HOH . 
G 4 HOH A 39 1139 56 HOH HOH . 
G 4 HOH A 40 1140 15 HOH HOH . 
G 4 HOH A 41 1141 71 HOH HOH . 
G 4 HOH A 42 1142 47 HOH HOH . 
G 4 HOH A 43 1143 64 HOH HOH . 
G 4 HOH A 44 1144 57 HOH HOH . 
G 4 HOH A 45 1145 82 HOH HOH . 
G 4 HOH A 46 1146 7 HOH HOH . 
G 4 HOH A 47 1147 79 HOH HOH . 
G 4 HOH A 48 1148 67 HOH HOH . 
G 4 HOH A 49 1149 73 HOH HOH . 
G 4 HOH A 50 1150 80 HOH HOH . 
G 4 HOH A 51 1151 160 HOH HOH . 
G 4 HOH A 52 1152 19 HOH HOH . 
G 4 HOH A 53 1153 4 HOH HOH . 
G 4 HOH A 54 1154 5 HOH HOH . 
G 4 HOH A 55 1155 44 HOH HOH . 
G 4 HOH A 56 1156 40 HOH HOH . 
G 4 HOH A 57 1157 31 HOH HOH . 
G 4 HOH A 58 1158 21 HOH HOH . 
G 4 HOH A 59 1159 6 HOH HOH . 
G 4 HOH A 60 1160 53 HOH HOH . 
G 4 HOH A 61 1161 13 HOH HOH . 
G 4 HOH A 62 1162 60 HOH HOH . 
G 4 HOH A 63 1163 213 HOH HOH . 
G 4 HOH A 64 1164 143 HOH HOH . 
G 4 HOH A 65 1165 52 HOH HOH . 
G 4 HOH A 66 1166 45 HOH HOH . 
G 4 HOH A 67 1167 11 HOH HOH . 
G 4 HOH A 68 1168 61 HOH HOH . 
G 4 HOH A 69 1169 84 HOH HOH . 
G 4 HOH A 70 1170 17 HOH HOH . 
G 4 HOH A 71 1171 24 HOH HOH . 
G 4 HOH A 72 1172 220 HOH HOH . 
G 4 HOH A 73 1173 20 HOH HOH . 
G 4 HOH A 74 1174 179 HOH HOH . 
G 4 HOH A 75 1175 104 HOH HOH . 
G 4 HOH A 76 1176 26 HOH HOH . 
G 4 HOH A 77 1177 41 HOH HOH . 
G 4 HOH A 78 1178 120 HOH HOH . 
G 4 HOH A 79 1179 169 HOH HOH . 
G 4 HOH A 80 1180 128 HOH HOH . 
G 4 HOH A 81 1181 68 HOH HOH . 
G 4 HOH A 82 1182 97 HOH HOH . 
G 4 HOH A 83 1183 111 HOH HOH . 
G 4 HOH A 84 1184 39 HOH HOH . 
G 4 HOH A 85 1185 127 HOH HOH . 
G 4 HOH A 86 1186 86 HOH HOH . 
G 4 HOH A 87 1187 155 HOH HOH . 
G 4 HOH A 88 1188 141 HOH HOH . 
G 4 HOH A 89 1189 38 HOH HOH . 
G 4 HOH A 90 1190 90 HOH HOH . 
G 4 HOH A 91 1191 167 HOH HOH . 
G 4 HOH A 92 1192 25 HOH HOH . 
G 4 HOH A 93 1193 18 HOH HOH . 
G 4 HOH A 94 1194 9 HOH HOH . 
G 4 HOH A 95 1195 54 HOH HOH . 
G 4 HOH A 96 1196 158 HOH HOH . 
G 4 HOH A 97 1197 197 HOH HOH . 
G 4 HOH A 98 1198 29 HOH HOH . 
G 4 HOH A 99 1199 199 HOH HOH . 
G 4 HOH A 100 1200 48 HOH HOH . 
G 4 HOH A 101 1201 32 HOH HOH . 
G 4 HOH A 102 1202 23 HOH HOH . 
G 4 HOH A 103 1203 85 HOH HOH . 
G 4 HOH A 104 1204 70 HOH HOH . 
G 4 HOH A 105 1205 94 HOH HOH . 
G 4 HOH A 106 1206 2 HOH HOH . 
G 4 HOH A 107 1207 49 HOH HOH . 
G 4 HOH A 108 1208 37 HOH HOH . 
G 4 HOH A 109 1209 181 HOH HOH . 
G 4 HOH A 110 1210 171 HOH HOH . 
G 4 HOH A 111 1211 168 HOH HOH . 
G 4 HOH A 112 1212 154 HOH HOH . 
G 4 HOH A 113 1213 96 HOH HOH . 
G 4 HOH A 114 1214 118 HOH HOH . 
G 4 HOH A 115 1215 16 HOH HOH . 
G 4 HOH A 116 1216 201 HOH HOH . 
G 4 HOH A 117 1217 66 HOH HOH . 
G 4 HOH A 118 1218 207 HOH HOH . 
G 4 HOH A 119 1219 139 HOH HOH . 
G 4 HOH A 120 1220 62 HOH HOH . 
G 4 HOH A 121 1221 133 HOH HOH . 
G 4 HOH A 122 1222 89 HOH HOH . 
G 4 HOH A 123 1223 178 HOH HOH . 
G 4 HOH A 124 1224 33 HOH HOH . 
G 4 HOH A 125 1225 229 HOH HOH . 
G 4 HOH A 126 1226 119 HOH HOH . 
G 4 HOH A 127 1227 3 HOH HOH . 
G 4 HOH A 128 1228 212 HOH HOH . 
G 4 HOH A 129 1229 164 HOH HOH . 
G 4 HOH A 130 1230 136 HOH HOH . 
G 4 HOH A 131 1231 77 HOH HOH . 
G 4 HOH A 132 1232 22 HOH HOH . 
G 4 HOH A 133 1233 8 HOH HOH . 
G 4 HOH A 134 1234 144 HOH HOH . 
G 4 HOH A 135 1235 226 HOH HOH . 
G 4 HOH A 136 1236 188 HOH HOH . 
G 4 HOH A 137 1237 99 HOH HOH . 
G 4 HOH A 138 1238 101 HOH HOH . 
G 4 HOH A 139 1239 137 HOH HOH . 
G 4 HOH A 140 1240 28 HOH HOH . 
G 4 HOH A 141 1241 35 HOH HOH . 
G 4 HOH A 142 1242 78 HOH HOH . 
G 4 HOH A 143 1243 75 HOH HOH . 
G 4 HOH A 144 1244 98 HOH HOH . 
G 4 HOH A 145 1245 87 HOH HOH . 
G 4 HOH A 146 1246 10 HOH HOH . 
G 4 HOH A 147 1247 92 HOH HOH . 
G 4 HOH A 148 1248 202 HOH HOH . 
G 4 HOH A 149 1249 195 HOH HOH . 
G 4 HOH A 150 1250 131 HOH HOH . 
G 4 HOH A 151 1251 30 HOH HOH . 
G 4 HOH A 152 1252 110 HOH HOH . 
G 4 HOH A 153 1253 187 HOH HOH . 
G 4 HOH A 154 1254 157 HOH HOH . 
G 4 HOH A 155 1255 74 HOH HOH . 
G 4 HOH A 156 1256 42 HOH HOH . 
G 4 HOH A 157 1257 165 HOH HOH . 
G 4 HOH A 158 1258 55 HOH HOH . 
G 4 HOH A 159 1259 163 HOH HOH . 
G 4 HOH A 160 1260 132 HOH HOH . 
G 4 HOH A 161 1261 34 HOH HOH . 
G 4 HOH A 162 1262 217 HOH HOH . 
G 4 HOH A 163 1263 109 HOH HOH . 
G 4 HOH A 164 1264 223 HOH HOH . 
G 4 HOH A 165 1265 107 HOH HOH . 
G 4 HOH A 166 1266 225 HOH HOH . 
G 4 HOH A 167 1267 145 HOH HOH . 
G 4 HOH A 168 1268 46 HOH HOH . 
G 4 HOH A 169 1269 63 HOH HOH . 
G 4 HOH A 170 1270 58 HOH HOH . 
G 4 HOH A 171 1271 232 HOH HOH . 
G 4 HOH A 172 1272 159 HOH HOH . 
G 4 HOH A 173 1273 36 HOH HOH . 
G 4 HOH A 174 1274 173 HOH HOH . 
G 4 HOH A 175 1275 51 HOH HOH . 
G 4 HOH A 176 1276 196 HOH HOH . 
G 4 HOH A 177 1277 211 HOH HOH . 
G 4 HOH A 178 1278 194 HOH HOH . 
G 4 HOH A 179 1279 117 HOH HOH . 
G 4 HOH A 180 1280 108 HOH HOH . 
G 4 HOH A 181 1281 166 HOH HOH . 
G 4 HOH A 182 1282 76 HOH HOH . 
G 4 HOH A 183 1283 222 HOH HOH . 
G 4 HOH A 184 1284 228 HOH HOH . 
G 4 HOH A 185 1285 129 HOH HOH . 
G 4 HOH A 186 1286 152 HOH HOH . 
G 4 HOH A 187 1287 103 HOH HOH . 
G 4 HOH A 188 1288 14 HOH HOH . 
G 4 HOH A 189 1289 218 HOH HOH . 
G 4 HOH A 190 1290 93 HOH HOH . 
G 4 HOH A 191 1291 206 HOH HOH . 
G 4 HOH A 192 1292 205 HOH HOH . 
G 4 HOH A 193 1293 180 HOH HOH . 
G 4 HOH A 194 1294 203 HOH HOH . 
G 4 HOH A 195 1295 224 HOH HOH . 
G 4 HOH A 196 1296 200 HOH HOH . 
G 4 HOH A 197 1297 150 HOH HOH . 
G 4 HOH A 198 1298 83 HOH HOH . 
G 4 HOH A 199 1299 184 HOH HOH . 
G 4 HOH A 200 1300 170 HOH HOH . 
G 4 HOH A 201 1301 140 HOH HOH . 
G 4 HOH A 202 1302 208 HOH HOH . 
G 4 HOH A 203 1303 231 HOH HOH . 
G 4 HOH A 204 1304 209 HOH HOH . 
G 4 HOH A 205 1305 138 HOH HOH . 
G 4 HOH A 206 1306 214 HOH HOH . 
G 4 HOH A 207 1307 91 HOH HOH . 
G 4 HOH A 208 1308 230 HOH HOH . 
G 4 HOH A 209 1309 198 HOH HOH . 
G 4 HOH A 210 1310 234 HOH HOH . 
G 4 HOH A 211 1311 189 HOH HOH . 
G 4 HOH A 212 1312 123 HOH HOH . 
G 4 HOH A 213 1313 122 HOH HOH . 
G 4 HOH A 214 1314 121 HOH HOH . 
G 4 HOH A 215 1315 216 HOH HOH . 
G 4 HOH A 216 1316 126 HOH HOH . 
G 4 HOH A 217 1317 162 HOH HOH . 
G 4 HOH A 218 1318 185 HOH HOH . 
G 4 HOH A 219 1319 192 HOH HOH . 
G 4 HOH A 220 1320 233 HOH HOH . 
G 4 HOH A 221 1321 130 HOH HOH . 
G 4 HOH A 222 1322 177 HOH HOH . 
G 4 HOH A 223 1323 135 HOH HOH . 
G 4 HOH A 224 1324 134 HOH HOH . 
G 4 HOH A 225 1325 106 HOH HOH . 
G 4 HOH A 226 1326 125 HOH HOH . 
G 4 HOH A 227 1327 175 HOH HOH . 
G 4 HOH A 228 1328 151 HOH HOH . 
G 4 HOH A 229 1329 147 HOH HOH . 
G 4 HOH A 230 1330 124 HOH HOH . 
G 4 HOH A 231 1331 174 HOH HOH . 
G 4 HOH A 232 1332 105 HOH HOH . 
G 4 HOH A 233 1333 182 HOH HOH . 
G 4 HOH A 234 1334 210 HOH HOH . 
G 4 HOH A 235 1335 235 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -71.379 2.416 19.056 1 9.13 ? C1 EDO 1002 A 1 
HETATM 2 O O1 EDO . . . C 3 -69.977 2.724 19.162 1 11.54 ? O1 EDO 1002 A 1 
HETATM 3 C C2 EDO . . . C 3 -71.816 2.365 17.601 1 11.7 ? C2 EDO 1002 A 1 
HETATM 4 O O2 EDO . . . C 3 -71.881 3.683 17.058 1 12.34 ? O2 EDO 1002 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#