data_5IA1 # _model_server_result.job_id qayypHunuavUr1wyj-gf0Q _model_server_result.datetime_utc '2024-10-10 01:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ia1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5IA1 # _exptl.entry_id 5IA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Ligand ID ZZL: MLN8054' _entity.formula_weight 476.862 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL)-5H-PYRIMIDO[5,4-D][2]BENZAZEPIN-2-YL]AMINO}BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 2.7.10.1 # _cell.angle_alpha 90 _cell.angle_beta 108.79 _cell.angle_gamma 90 _cell.entry_id 5IA1 _cell.length_a 32.714 _cell.length_b 106.741 _cell.length_c 40.729 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H15 Cl F2 N4 O2' _chem_comp.formula_weight 476.862 _chem_comp.id ZZL _chem_comp.mon_nstd_flag . _chem_comp.name '4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL)-5H-PYRIMIDO[5,4-D][2]BENZAZEPIN-2-YL]AMINO}BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 ZZL sing 385 n n C13 N14 ZZL sing 386 n n C15 C24 ZZL sing 387 n n C15 N14 ZZL doub 388 n n C15 C16 ZZL sing 389 n n C17 C16 ZZL sing 390 n y C17 F18 ZZL sing 391 n n C17 C19 ZZL doub 392 n y C20 C21 ZZL doub 393 n y C20 C19 ZZL sing 394 n y C21 C22 ZZL sing 395 n y C22 C16 ZZL doub 396 n y C22 F23 ZZL sing 397 n n C24 C25 ZZL sing 398 n y C24 C30 ZZL doub 399 n y C26 C28 ZZL sing 400 n y C26 C25 ZZL doub 401 n y C26 CL1 ZZL sing 402 n n C28 C29 ZZL doub 403 n y O01 C02 ZZL doub 404 n n C02 O03 ZZL sing 405 n n C02 C04 ZZL sing 406 n n C04 C05 ZZL sing 407 n y C04 C34 ZZL doub 408 n y C05 C06 ZZL doub 409 n y C06 C07 ZZL sing 410 n y C07 N08 ZZL sing 411 n n C07 C33 ZZL doub 412 n y N08 C09 ZZL sing 413 n n C09 N10 ZZL doub 414 n y C09 N32 ZZL sing 415 n y N10 C11 ZZL sing 416 n y C11 C12 ZZL doub 417 n y C12 C31 ZZL sing 418 n y C29 C30 ZZL sing 419 n y C30 C31 ZZL sing 420 n y C31 N32 ZZL doub 421 n y C33 C34 ZZL sing 422 n y C13 H131 ZZL sing 423 n n C13 H132 ZZL sing 424 n n C19 H19 ZZL sing 425 n n C20 H20 ZZL sing 426 n n C21 H21 ZZL sing 427 n n C25 H25 ZZL sing 428 n n C28 H28 ZZL sing 429 n n C29 H29 ZZL sing 430 n n O03 H03 ZZL sing 431 n n C05 H05 ZZL sing 432 n n C34 H34 ZZL sing 433 n n C06 H06 ZZL sing 434 n n N08 H08 ZZL sing 435 n n C33 H33 ZZL sing 436 n n C11 H11 ZZL sing 437 n n # _atom_sites.entry_id 5IA1 _atom_sites.fract_transf_matrix[1][1] 0.030568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0104 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZZL A 1 1001 1001 ZZL ZZL . C 3 EDO A 1 1002 2001 EDO EDO . D 4 HOH A 1 1101 62 HOH HOH . D 4 HOH A 2 1102 24 HOH HOH . D 4 HOH A 3 1103 107 HOH HOH . D 4 HOH A 4 1104 75 HOH HOH . D 4 HOH A 5 1105 86 HOH HOH . D 4 HOH A 6 1106 77 HOH HOH . D 4 HOH A 7 1107 51 HOH HOH . D 4 HOH A 8 1108 38 HOH HOH . D 4 HOH A 9 1109 8 HOH HOH . D 4 HOH A 10 1110 19 HOH HOH . D 4 HOH A 11 1111 27 HOH HOH . D 4 HOH A 12 1112 17 HOH HOH . D 4 HOH A 13 1113 105 HOH HOH . D 4 HOH A 14 1114 120 HOH HOH . D 4 HOH A 15 1115 134 HOH HOH . D 4 HOH A 16 1116 13 HOH HOH . D 4 HOH A 17 1117 2 HOH HOH . D 4 HOH A 18 1118 31 HOH HOH . D 4 HOH A 19 1119 91 HOH HOH . D 4 HOH A 20 1120 39 HOH HOH . D 4 HOH A 21 1121 37 HOH HOH . D 4 HOH A 22 1122 74 HOH HOH . D 4 HOH A 23 1123 14 HOH HOH . D 4 HOH A 24 1124 41 HOH HOH . D 4 HOH A 25 1125 47 HOH HOH . D 4 HOH A 26 1126 23 HOH HOH . D 4 HOH A 27 1127 53 HOH HOH . D 4 HOH A 28 1128 90 HOH HOH . D 4 HOH A 29 1129 7 HOH HOH . D 4 HOH A 30 1130 9 HOH HOH . D 4 HOH A 31 1131 4 HOH HOH . D 4 HOH A 32 1132 72 HOH HOH . D 4 HOH A 33 1133 34 HOH HOH . D 4 HOH A 34 1134 82 HOH HOH . D 4 HOH A 35 1135 12 HOH HOH . D 4 HOH A 36 1136 119 HOH HOH . D 4 HOH A 37 1137 49 HOH HOH . D 4 HOH A 38 1138 48 HOH HOH . D 4 HOH A 39 1139 22 HOH HOH . D 4 HOH A 40 1140 88 HOH HOH . D 4 HOH A 41 1141 5 HOH HOH . D 4 HOH A 42 1142 36 HOH HOH . D 4 HOH A 43 1143 85 HOH HOH . D 4 HOH A 44 1144 16 HOH HOH . D 4 HOH A 45 1145 60 HOH HOH . D 4 HOH A 46 1146 26 HOH HOH . D 4 HOH A 47 1147 45 HOH HOH . D 4 HOH A 48 1148 25 HOH HOH . D 4 HOH A 49 1149 64 HOH HOH . D 4 HOH A 50 1150 6 HOH HOH . D 4 HOH A 51 1151 59 HOH HOH . D 4 HOH A 52 1152 15 HOH HOH . D 4 HOH A 53 1153 11 HOH HOH . D 4 HOH A 54 1154 18 HOH HOH . D 4 HOH A 55 1155 65 HOH HOH . D 4 HOH A 56 1156 61 HOH HOH . D 4 HOH A 57 1157 103 HOH HOH . D 4 HOH A 58 1158 50 HOH HOH . D 4 HOH A 59 1159 71 HOH HOH . D 4 HOH A 60 1160 52 HOH HOH . D 4 HOH A 61 1161 133 HOH HOH . D 4 HOH A 62 1162 81 HOH HOH . D 4 HOH A 63 1163 126 HOH HOH . D 4 HOH A 64 1164 10 HOH HOH . D 4 HOH A 65 1165 30 HOH HOH . D 4 HOH A 66 1166 73 HOH HOH . D 4 HOH A 67 1167 29 HOH HOH . D 4 HOH A 68 1168 68 HOH HOH . D 4 HOH A 69 1169 98 HOH HOH . D 4 HOH A 70 1170 78 HOH HOH . D 4 HOH A 71 1171 56 HOH HOH . D 4 HOH A 72 1172 43 HOH HOH . D 4 HOH A 73 1173 55 HOH HOH . D 4 HOH A 74 1174 69 HOH HOH . D 4 HOH A 75 1175 33 HOH HOH . D 4 HOH A 76 1176 123 HOH HOH . D 4 HOH A 77 1177 135 HOH HOH . D 4 HOH A 78 1178 70 HOH HOH . D 4 HOH A 79 1179 3 HOH HOH . D 4 HOH A 80 1180 112 HOH HOH . D 4 HOH A 81 1181 129 HOH HOH . D 4 HOH A 82 1182 28 HOH HOH . D 4 HOH A 83 1183 99 HOH HOH . D 4 HOH A 84 1184 44 HOH HOH . D 4 HOH A 85 1185 79 HOH HOH . D 4 HOH A 86 1186 40 HOH HOH . D 4 HOH A 87 1187 46 HOH HOH . D 4 HOH A 88 1188 21 HOH HOH . D 4 HOH A 89 1189 1 HOH HOH . D 4 HOH A 90 1190 100 HOH HOH . D 4 HOH A 91 1191 122 HOH HOH . D 4 HOH A 92 1192 66 HOH HOH . D 4 HOH A 93 1193 57 HOH HOH . D 4 HOH A 94 1194 95 HOH HOH . D 4 HOH A 95 1195 67 HOH HOH . D 4 HOH A 96 1196 80 HOH HOH . D 4 HOH A 97 1197 93 HOH HOH . D 4 HOH A 98 1198 113 HOH HOH . D 4 HOH A 99 1199 63 HOH HOH . D 4 HOH A 100 1200 104 HOH HOH . D 4 HOH A 101 1201 54 HOH HOH . D 4 HOH A 102 1202 111 HOH HOH . D 4 HOH A 103 1203 35 HOH HOH . D 4 HOH A 104 1204 96 HOH HOH . D 4 HOH A 105 1205 20 HOH HOH . D 4 HOH A 106 1206 97 HOH HOH . D 4 HOH A 107 1207 114 HOH HOH . D 4 HOH A 108 1208 94 HOH HOH . D 4 HOH A 109 1209 131 HOH HOH . D 4 HOH A 110 1210 92 HOH HOH . D 4 HOH A 111 1211 58 HOH HOH . D 4 HOH A 112 1212 132 HOH HOH . D 4 HOH A 113 1213 127 HOH HOH . D 4 HOH A 114 1214 110 HOH HOH . D 4 HOH A 115 1215 121 HOH HOH . D 4 HOH A 116 1216 118 HOH HOH . D 4 HOH A 117 1217 83 HOH HOH . D 4 HOH A 118 1218 87 HOH HOH . D 4 HOH A 119 1219 130 HOH HOH . D 4 HOH A 120 1220 116 HOH HOH . D 4 HOH A 121 1221 102 HOH HOH . D 4 HOH A 122 1222 101 HOH HOH . D 4 HOH A 123 1223 125 HOH HOH . D 4 HOH A 124 1224 76 HOH HOH . D 4 HOH A 125 1225 115 HOH HOH . D 4 HOH A 126 1226 117 HOH HOH . D 4 HOH A 127 1227 84 HOH HOH . D 4 HOH A 128 1228 42 HOH HOH . D 4 HOH A 129 1229 106 HOH HOH . D 4 HOH A 130 1230 108 HOH HOH . D 4 HOH A 131 1231 109 HOH HOH . D 4 HOH A 132 1232 136 HOH HOH . D 4 HOH A 133 1233 124 HOH HOH . D 4 HOH A 134 1234 32 HOH HOH . D 4 HOH A 135 1235 128 HOH HOH . D 4 HOH A 136 1236 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 ZZL . . . B 2 -89.123 -17.003 8.313 1 36.88 ? C13 ZZL 1001 A 1 HETATM 2 C C15 ZZL . . . B 2 -88.086 -16.545 10.607 1 38.4 ? C15 ZZL 1001 A 1 HETATM 3 C C17 ZZL . . . B 2 -89.31 -16.159 12.711 1 41.47 ? C17 ZZL 1001 A 1 HETATM 4 C C20 ZZL . . . B 2 -88.625 -14.35 14.17 1 38.65 ? C20 ZZL 1001 A 1 HETATM 5 C C21 ZZL . . . B 2 -87.613 -14.023 13.288 1 38.32 ? C21 ZZL 1001 A 1 HETATM 6 C C22 ZZL . . . B 2 -87.452 -14.762 12.115 1 41.9 ? C22 ZZL 1001 A 1 HETATM 7 C C24 ZZL . . . B 2 -86.849 -17.149 10.359 1 39.49 ? C24 ZZL 1001 A 1 HETATM 8 C C26 ZZL . . . B 2 -85 -18.304 11.396 1 43.09 ? C26 ZZL 1001 A 1 HETATM 9 C C28 ZZL . . . B 2 -84.348 -18.364 10.166 1 41.97 ? C28 ZZL 1001 A 1 HETATM 10 O O01 ZZL . . . B 2 -79.013 -14.148 4.337 1 44.81 ? O01 ZZL 1001 A 1 HETATM 11 C C02 ZZL . . . B 2 -79.753 -14.07 5.346 1 43.79 ? C02 ZZL 1001 A 1 HETATM 12 O O03 ZZL . . . B 2 -79.287 -13.643 6.431 1 45.97 ? O03 ZZL 1001 A 1 HETATM 13 C C04 ZZL . . . B 2 -81.104 -14.401 5.259 1 36.52 ? C04 ZZL 1001 A 1 HETATM 14 C C05 ZZL . . . B 2 -81.776 -14.281 4.048 1 30.04 ? C05 ZZL 1001 A 1 HETATM 15 C C06 ZZL . . . B 2 -83.131 -14.594 3.978 1 32.48 ? C06 ZZL 1001 A 1 HETATM 16 C C07 ZZL . . . B 2 -83.844 -15.038 5.095 1 33.1 ? C07 ZZL 1001 A 1 HETATM 17 N N08 ZZL . . . B 2 -85.161 -15.32 4.907 1 34.31 ? N08 ZZL 1001 A 1 HETATM 18 C C09 ZZL . . . B 2 -86.036 -15.76 5.839 1 32.36 ? C09 ZZL 1001 A 1 HETATM 19 N N10 ZZL . . . B 2 -87.329 -15.675 5.485 1 31.35 ? N10 ZZL 1001 A 1 HETATM 20 C C11 ZZL . . . B 2 -88.368 -16.095 6.329 1 35.59 ? C11 ZZL 1001 A 1 HETATM 21 C C12 ZZL . . . B 2 -88.012 -16.612 7.569 1 32.31 ? C12 ZZL 1001 A 1 HETATM 22 N N14 ZZL . . . B 2 -89.068 -16.443 9.696 1 35.54 ? N14 ZZL 1001 A 1 HETATM 23 C C16 ZZL . . . B 2 -88.284 -15.848 11.816 1 37.34 ? C16 ZZL 1001 A 1 HETATM 24 F F18 ZZL . . . B 2 -90.189 -17.211 12.485 1 45.02 ? F18 ZZL 1001 A 1 HETATM 25 C C19 ZZL . . . B 2 -89.46 -15.419 13.877 1 42.87 ? C19 ZZL 1001 A 1 HETATM 26 F F23 ZZL . . . B 2 -86.414 -14.401 11.261 1 40.33 ? F23 ZZL 1001 A 1 HETATM 27 C C25 ZZL . . . B 2 -86.247 -17.683 11.501 1 38.02 ? C25 ZZL 1001 A 1 HETATM 28 CL CL1 ZZL . . . B 2 -84.231 -19.005 12.813 1 54.77 ? CL1 ZZL 1001 A 1 HETATM 29 C C29 ZZL . . . B 2 -84.938 -17.813 9.027 1 40.58 ? C29 ZZL 1001 A 1 HETATM 30 C C30 ZZL . . . B 2 -86.191 -17.211 9.125 1 40.79 ? C30 ZZL 1001 A 1 HETATM 31 C C31 ZZL . . . B 2 -86.667 -16.707 7.908 1 38.67 ? C31 ZZL 1001 A 1 HETATM 32 N N32 ZZL . . . B 2 -85.706 -16.297 7.042 1 35.55 ? N32 ZZL 1001 A 1 HETATM 33 C C33 ZZL . . . B 2 -83.149 -15.158 6.301 1 39.49 ? C33 ZZL 1001 A 1 HETATM 34 C C34 ZZL . . . B 2 -81.791 -14.836 6.39 1 33.46 ? C34 ZZL 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #