data_5IA1 # _model_server_result.job_id H6xaIR-ggk1CMDk0P4-wjg _model_server_result.datetime_utc '2025-02-17 14:56:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ia1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5IA1 # _exptl.entry_id 5IA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'EDO from cryo soaking' _entity.formula_weight 62.068 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 2.7.10.1 # _cell.angle_alpha 90 _cell.angle_beta 108.79 _cell.angle_gamma 90 _cell.entry_id 5IA1 _cell.length_a 32.714 _cell.length_b 106.741 _cell.length_c 40.729 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5IA1 _atom_sites.fract_transf_matrix[1][1] 0.030568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0104 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZZL A 1 1001 1001 ZZL ZZL . C 3 EDO A 1 1002 2001 EDO EDO . D 4 HOH A 1 1101 62 HOH HOH . D 4 HOH A 2 1102 24 HOH HOH . D 4 HOH A 3 1103 107 HOH HOH . D 4 HOH A 4 1104 75 HOH HOH . D 4 HOH A 5 1105 86 HOH HOH . D 4 HOH A 6 1106 77 HOH HOH . D 4 HOH A 7 1107 51 HOH HOH . D 4 HOH A 8 1108 38 HOH HOH . D 4 HOH A 9 1109 8 HOH HOH . D 4 HOH A 10 1110 19 HOH HOH . D 4 HOH A 11 1111 27 HOH HOH . D 4 HOH A 12 1112 17 HOH HOH . D 4 HOH A 13 1113 105 HOH HOH . D 4 HOH A 14 1114 120 HOH HOH . D 4 HOH A 15 1115 134 HOH HOH . D 4 HOH A 16 1116 13 HOH HOH . D 4 HOH A 17 1117 2 HOH HOH . D 4 HOH A 18 1118 31 HOH HOH . D 4 HOH A 19 1119 91 HOH HOH . D 4 HOH A 20 1120 39 HOH HOH . D 4 HOH A 21 1121 37 HOH HOH . D 4 HOH A 22 1122 74 HOH HOH . D 4 HOH A 23 1123 14 HOH HOH . D 4 HOH A 24 1124 41 HOH HOH . D 4 HOH A 25 1125 47 HOH HOH . D 4 HOH A 26 1126 23 HOH HOH . D 4 HOH A 27 1127 53 HOH HOH . D 4 HOH A 28 1128 90 HOH HOH . D 4 HOH A 29 1129 7 HOH HOH . D 4 HOH A 30 1130 9 HOH HOH . D 4 HOH A 31 1131 4 HOH HOH . D 4 HOH A 32 1132 72 HOH HOH . D 4 HOH A 33 1133 34 HOH HOH . D 4 HOH A 34 1134 82 HOH HOH . D 4 HOH A 35 1135 12 HOH HOH . D 4 HOH A 36 1136 119 HOH HOH . D 4 HOH A 37 1137 49 HOH HOH . D 4 HOH A 38 1138 48 HOH HOH . D 4 HOH A 39 1139 22 HOH HOH . D 4 HOH A 40 1140 88 HOH HOH . D 4 HOH A 41 1141 5 HOH HOH . D 4 HOH A 42 1142 36 HOH HOH . D 4 HOH A 43 1143 85 HOH HOH . D 4 HOH A 44 1144 16 HOH HOH . D 4 HOH A 45 1145 60 HOH HOH . D 4 HOH A 46 1146 26 HOH HOH . D 4 HOH A 47 1147 45 HOH HOH . D 4 HOH A 48 1148 25 HOH HOH . D 4 HOH A 49 1149 64 HOH HOH . D 4 HOH A 50 1150 6 HOH HOH . D 4 HOH A 51 1151 59 HOH HOH . D 4 HOH A 52 1152 15 HOH HOH . D 4 HOH A 53 1153 11 HOH HOH . D 4 HOH A 54 1154 18 HOH HOH . D 4 HOH A 55 1155 65 HOH HOH . D 4 HOH A 56 1156 61 HOH HOH . D 4 HOH A 57 1157 103 HOH HOH . D 4 HOH A 58 1158 50 HOH HOH . D 4 HOH A 59 1159 71 HOH HOH . D 4 HOH A 60 1160 52 HOH HOH . D 4 HOH A 61 1161 133 HOH HOH . D 4 HOH A 62 1162 81 HOH HOH . D 4 HOH A 63 1163 126 HOH HOH . D 4 HOH A 64 1164 10 HOH HOH . D 4 HOH A 65 1165 30 HOH HOH . D 4 HOH A 66 1166 73 HOH HOH . D 4 HOH A 67 1167 29 HOH HOH . D 4 HOH A 68 1168 68 HOH HOH . D 4 HOH A 69 1169 98 HOH HOH . D 4 HOH A 70 1170 78 HOH HOH . D 4 HOH A 71 1171 56 HOH HOH . D 4 HOH A 72 1172 43 HOH HOH . D 4 HOH A 73 1173 55 HOH HOH . D 4 HOH A 74 1174 69 HOH HOH . D 4 HOH A 75 1175 33 HOH HOH . D 4 HOH A 76 1176 123 HOH HOH . D 4 HOH A 77 1177 135 HOH HOH . D 4 HOH A 78 1178 70 HOH HOH . D 4 HOH A 79 1179 3 HOH HOH . D 4 HOH A 80 1180 112 HOH HOH . D 4 HOH A 81 1181 129 HOH HOH . D 4 HOH A 82 1182 28 HOH HOH . D 4 HOH A 83 1183 99 HOH HOH . D 4 HOH A 84 1184 44 HOH HOH . D 4 HOH A 85 1185 79 HOH HOH . D 4 HOH A 86 1186 40 HOH HOH . D 4 HOH A 87 1187 46 HOH HOH . D 4 HOH A 88 1188 21 HOH HOH . D 4 HOH A 89 1189 1 HOH HOH . D 4 HOH A 90 1190 100 HOH HOH . D 4 HOH A 91 1191 122 HOH HOH . D 4 HOH A 92 1192 66 HOH HOH . D 4 HOH A 93 1193 57 HOH HOH . D 4 HOH A 94 1194 95 HOH HOH . D 4 HOH A 95 1195 67 HOH HOH . D 4 HOH A 96 1196 80 HOH HOH . D 4 HOH A 97 1197 93 HOH HOH . D 4 HOH A 98 1198 113 HOH HOH . D 4 HOH A 99 1199 63 HOH HOH . D 4 HOH A 100 1200 104 HOH HOH . D 4 HOH A 101 1201 54 HOH HOH . D 4 HOH A 102 1202 111 HOH HOH . D 4 HOH A 103 1203 35 HOH HOH . D 4 HOH A 104 1204 96 HOH HOH . D 4 HOH A 105 1205 20 HOH HOH . D 4 HOH A 106 1206 97 HOH HOH . D 4 HOH A 107 1207 114 HOH HOH . D 4 HOH A 108 1208 94 HOH HOH . D 4 HOH A 109 1209 131 HOH HOH . D 4 HOH A 110 1210 92 HOH HOH . D 4 HOH A 111 1211 58 HOH HOH . D 4 HOH A 112 1212 132 HOH HOH . D 4 HOH A 113 1213 127 HOH HOH . D 4 HOH A 114 1214 110 HOH HOH . D 4 HOH A 115 1215 121 HOH HOH . D 4 HOH A 116 1216 118 HOH HOH . D 4 HOH A 117 1217 83 HOH HOH . D 4 HOH A 118 1218 87 HOH HOH . D 4 HOH A 119 1219 130 HOH HOH . D 4 HOH A 120 1220 116 HOH HOH . D 4 HOH A 121 1221 102 HOH HOH . D 4 HOH A 122 1222 101 HOH HOH . D 4 HOH A 123 1223 125 HOH HOH . D 4 HOH A 124 1224 76 HOH HOH . D 4 HOH A 125 1225 115 HOH HOH . D 4 HOH A 126 1226 117 HOH HOH . D 4 HOH A 127 1227 84 HOH HOH . D 4 HOH A 128 1228 42 HOH HOH . D 4 HOH A 129 1229 106 HOH HOH . D 4 HOH A 130 1230 108 HOH HOH . D 4 HOH A 131 1231 109 HOH HOH . D 4 HOH A 132 1232 136 HOH HOH . D 4 HOH A 133 1233 124 HOH HOH . D 4 HOH A 134 1234 32 HOH HOH . D 4 HOH A 135 1235 128 HOH HOH . D 4 HOH A 136 1236 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -102.485 -40.659 2.984 1 50.89 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . C 3 -101.079 -40.614 2.691 1 48.53 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . C 3 -103.041 -42.019 2.571 1 47.52 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . C 3 -102.09 -42.692 1.738 1 48.13 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #