data_5IA4
#
_model_server_result.job_id            GIo8NB6LOWvVphgGrhi14Q 
_model_server_result.datetime_utc      '2024-11-24 03:40:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ia4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    5IA4 
#
_exptl.entry_id    5IA4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'EDO from cryo soaking' 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     2.7.10.1 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IA4 
_cell.length_a            80.769 
_cell.length_b            104.482 
_cell.length_c            34.536 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IA4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 168 n n 
C1 C2 EDO sing 169 n n 
C1 H11 EDO sing 170 n n 
C1 H12 EDO sing 171 n n 
O1 HO1 EDO sing 172 n n 
C2 O2 EDO sing 173 n n 
C2 H21 EDO sing 174 n n 
C2 H22 EDO sing 175 n n 
O2 HO2 EDO sing 176 n n 
#
_atom_sites.entry_id                     5IA4 
_atom_sites.fract_transf_matrix[1][1]    0.012381 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 88Z A 1 1001 1001 88Z 88Z . 
C 3 EDO A 1 1002 2001 EDO EDO . 
D 4 HOH A 1 1101 87 HOH HOH . 
D 4 HOH A 2 1102 98 HOH HOH . 
D 4 HOH A 3 1103 94 HOH HOH . 
D 4 HOH A 4 1104 32 HOH HOH . 
D 4 HOH A 5 1105 3 HOH HOH . 
D 4 HOH A 6 1106 129 HOH HOH . 
D 4 HOH A 7 1107 69 HOH HOH . 
D 4 HOH A 8 1108 25 HOH HOH . 
D 4 HOH A 9 1109 53 HOH HOH . 
D 4 HOH A 10 1110 23 HOH HOH . 
D 4 HOH A 11 1111 77 HOH HOH . 
D 4 HOH A 12 1112 70 HOH HOH . 
D 4 HOH A 13 1113 42 HOH HOH . 
D 4 HOH A 14 1114 39 HOH HOH . 
D 4 HOH A 15 1115 99 HOH HOH . 
D 4 HOH A 16 1116 73 HOH HOH . 
D 4 HOH A 17 1117 2 HOH HOH . 
D 4 HOH A 18 1118 34 HOH HOH . 
D 4 HOH A 19 1119 29 HOH HOH . 
D 4 HOH A 20 1120 84 HOH HOH . 
D 4 HOH A 21 1121 27 HOH HOH . 
D 4 HOH A 22 1122 24 HOH HOH . 
D 4 HOH A 23 1123 131 HOH HOH . 
D 4 HOH A 24 1124 33 HOH HOH . 
D 4 HOH A 25 1125 28 HOH HOH . 
D 4 HOH A 26 1126 21 HOH HOH . 
D 4 HOH A 27 1127 30 HOH HOH . 
D 4 HOH A 28 1128 14 HOH HOH . 
D 4 HOH A 29 1129 26 HOH HOH . 
D 4 HOH A 30 1130 121 HOH HOH . 
D 4 HOH A 31 1131 58 HOH HOH . 
D 4 HOH A 32 1132 13 HOH HOH . 
D 4 HOH A 33 1133 19 HOH HOH . 
D 4 HOH A 34 1134 44 HOH HOH . 
D 4 HOH A 35 1135 31 HOH HOH . 
D 4 HOH A 36 1136 90 HOH HOH . 
D 4 HOH A 37 1137 97 HOH HOH . 
D 4 HOH A 38 1138 7 HOH HOH . 
D 4 HOH A 39 1139 50 HOH HOH . 
D 4 HOH A 40 1140 43 HOH HOH . 
D 4 HOH A 41 1141 5 HOH HOH . 
D 4 HOH A 42 1142 8 HOH HOH . 
D 4 HOH A 43 1143 40 HOH HOH . 
D 4 HOH A 44 1144 35 HOH HOH . 
D 4 HOH A 45 1145 11 HOH HOH . 
D 4 HOH A 46 1146 45 HOH HOH . 
D 4 HOH A 47 1147 82 HOH HOH . 
D 4 HOH A 48 1148 17 HOH HOH . 
D 4 HOH A 49 1149 130 HOH HOH . 
D 4 HOH A 50 1150 60 HOH HOH . 
D 4 HOH A 51 1151 4 HOH HOH . 
D 4 HOH A 52 1152 1 HOH HOH . 
D 4 HOH A 53 1153 36 HOH HOH . 
D 4 HOH A 54 1154 46 HOH HOH . 
D 4 HOH A 55 1155 93 HOH HOH . 
D 4 HOH A 56 1156 22 HOH HOH . 
D 4 HOH A 57 1157 59 HOH HOH . 
D 4 HOH A 58 1158 12 HOH HOH . 
D 4 HOH A 59 1159 66 HOH HOH . 
D 4 HOH A 60 1160 64 HOH HOH . 
D 4 HOH A 61 1161 100 HOH HOH . 
D 4 HOH A 62 1162 20 HOH HOH . 
D 4 HOH A 63 1163 86 HOH HOH . 
D 4 HOH A 64 1164 9 HOH HOH . 
D 4 HOH A 65 1165 47 HOH HOH . 
D 4 HOH A 66 1166 89 HOH HOH . 
D 4 HOH A 67 1167 85 HOH HOH . 
D 4 HOH A 68 1168 16 HOH HOH . 
D 4 HOH A 69 1169 10 HOH HOH . 
D 4 HOH A 70 1170 61 HOH HOH . 
D 4 HOH A 71 1171 56 HOH HOH . 
D 4 HOH A 72 1172 79 HOH HOH . 
D 4 HOH A 73 1173 96 HOH HOH . 
D 4 HOH A 74 1174 15 HOH HOH . 
D 4 HOH A 75 1175 6 HOH HOH . 
D 4 HOH A 76 1176 54 HOH HOH . 
D 4 HOH A 77 1177 81 HOH HOH . 
D 4 HOH A 78 1178 68 HOH HOH . 
D 4 HOH A 79 1179 57 HOH HOH . 
D 4 HOH A 80 1180 105 HOH HOH . 
D 4 HOH A 81 1181 88 HOH HOH . 
D 4 HOH A 82 1182 49 HOH HOH . 
D 4 HOH A 83 1183 113 HOH HOH . 
D 4 HOH A 84 1184 37 HOH HOH . 
D 4 HOH A 85 1185 51 HOH HOH . 
D 4 HOH A 86 1186 78 HOH HOH . 
D 4 HOH A 87 1187 118 HOH HOH . 
D 4 HOH A 88 1188 63 HOH HOH . 
D 4 HOH A 89 1189 123 HOH HOH . 
D 4 HOH A 90 1190 101 HOH HOH . 
D 4 HOH A 91 1191 41 HOH HOH . 
D 4 HOH A 92 1192 95 HOH HOH . 
D 4 HOH A 93 1193 62 HOH HOH . 
D 4 HOH A 94 1194 126 HOH HOH . 
D 4 HOH A 95 1195 106 HOH HOH . 
D 4 HOH A 96 1196 48 HOH HOH . 
D 4 HOH A 97 1197 71 HOH HOH . 
D 4 HOH A 98 1198 52 HOH HOH . 
D 4 HOH A 99 1199 117 HOH HOH . 
D 4 HOH A 100 1200 67 HOH HOH . 
D 4 HOH A 101 1201 76 HOH HOH . 
D 4 HOH A 102 1202 107 HOH HOH . 
D 4 HOH A 103 1203 72 HOH HOH . 
D 4 HOH A 104 1204 104 HOH HOH . 
D 4 HOH A 105 1205 111 HOH HOH . 
D 4 HOH A 106 1206 74 HOH HOH . 
D 4 HOH A 107 1207 109 HOH HOH . 
D 4 HOH A 108 1208 122 HOH HOH . 
D 4 HOH A 109 1209 80 HOH HOH . 
D 4 HOH A 110 1210 18 HOH HOH . 
D 4 HOH A 111 1211 124 HOH HOH . 
D 4 HOH A 112 1212 55 HOH HOH . 
D 4 HOH A 113 1213 38 HOH HOH . 
D 4 HOH A 114 1214 103 HOH HOH . 
D 4 HOH A 115 1215 65 HOH HOH . 
D 4 HOH A 116 1216 102 HOH HOH . 
D 4 HOH A 117 1217 91 HOH HOH . 
D 4 HOH A 118 1218 83 HOH HOH . 
D 4 HOH A 119 1219 112 HOH HOH . 
D 4 HOH A 120 1220 108 HOH HOH . 
D 4 HOH A 121 1221 114 HOH HOH . 
D 4 HOH A 122 1222 119 HOH HOH . 
D 4 HOH A 123 1223 125 HOH HOH . 
D 4 HOH A 124 1224 120 HOH HOH . 
D 4 HOH A 125 1225 116 HOH HOH . 
D 4 HOH A 126 1226 75 HOH HOH . 
D 4 HOH A 127 1227 115 HOH HOH . 
D 4 HOH A 128 1228 92 HOH HOH . 
D 4 HOH A 129 1229 127 HOH HOH . 
D 4 HOH A 130 1230 110 HOH HOH . 
D 4 HOH A 131 1231 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 20.172 -3.424 101.265 1 60 ? C1 EDO 1002 A 1 
HETATM 2 O O1 EDO . . . C 3 19.765 -2.19 101.875 1 68.49 ? O1 EDO 1002 A 1 
HETATM 3 C C2 EDO . . . C 3 20.314 -3.202 99.762 1 57.48 ? C2 EDO 1002 A 1 
HETATM 4 O O2 EDO . . . C 3 20.978 -4.323 99.169 1 70.17 ? O2 EDO 1002 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#