data_5IA5 # _model_server_result.job_id iCkEZ0TFhxxiUEUCymUqSg _model_server_result.datetime_utc '2024-11-22 04:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ia5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5IA5 # _exptl.entry_id 5IA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 633.688 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description golvatinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 2.7.10.1 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IA5 _cell.length_a 80.094 _cell.length_b 104.715 _cell.length_c 34.758 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H37 F2 N7 O4' _chem_comp.formula_weight 633.688 _chem_comp.id GV0 _chem_comp.mon_nstd_flag . _chem_comp.name golvatinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAV CAZ GV0 sing 138 n n CAV NAG GV0 sing 139 n n CAZ NAI GV0 sing 140 n n NAG CAW GV0 sing 141 n n NAG CAQ GV0 sing 142 n n NAI CBC GV0 sing 143 n n NAI CBA GV0 sing 144 n n CAW CBA GV0 sing 145 n n CAQ CAU GV0 sing 146 n n CAQ CAT GV0 sing 147 n n CAU CAY GV0 sing 148 n n CAT CAX GV0 sing 149 n n CAY NAH GV0 sing 150 n n NAH CAX GV0 sing 151 n n NAH CBB GV0 sing 152 n n OAE CBB GV0 doub 153 n n CBB NAL GV0 sing 154 n n NAL CBJ GV0 sing 155 n n CBQ CBJ GV0 doub 156 n y CBQ CBR GV0 sing 157 n y CBJ NAM GV0 sing 158 n y OAF CBR GV0 sing 159 n n OAF CBO GV0 sing 160 n n CBR CBS GV0 doub 161 n y NAM CBT GV0 doub 162 n y CBO CBL GV0 doub 163 n y CBO CBK GV0 sing 164 n y CBL CBG GV0 sing 165 n y CBS CBT GV0 sing 166 n y CBK CBF GV0 doub 167 n y CBG CBD GV0 doub 168 n y CBF CBD GV0 sing 169 n y CBF FAA GV0 sing 170 n n CBD NAJ GV0 sing 171 n n OAC CAR GV0 doub 172 n n NAJ CAR GV0 sing 173 n n CAR CAN GV0 sing 174 n n CAO CAN GV0 sing 175 n n CAO CAP GV0 sing 176 n n CAN CAP GV0 sing 177 n n CAN CAS GV0 sing 178 n n OAD CAS GV0 doub 179 n n CAS NAK GV0 sing 180 n n NAK CBE GV0 sing 181 n n CBE CBI GV0 doub 182 n y CBE CBH GV0 sing 183 n y CBI CBN GV0 sing 184 n y CBH CBM GV0 doub 185 n y CBN CBP GV0 doub 186 n y CBM CBP GV0 sing 187 n y CBP FAB GV0 sing 188 n n CAV H1 GV0 sing 189 n n CAV H2 GV0 sing 190 n n CAZ H3 GV0 sing 191 n n CAZ H4 GV0 sing 192 n n CBC H6 GV0 sing 193 n n CBC H7 GV0 sing 194 n n CBC H8 GV0 sing 195 n n CBA H9 GV0 sing 196 n n CBA H10 GV0 sing 197 n n CAW H11 GV0 sing 198 n n CAW H12 GV0 sing 199 n n CAQ H14 GV0 sing 200 n n CAU H15 GV0 sing 201 n n CAU H16 GV0 sing 202 n n CAY H17 GV0 sing 203 n n CAY H18 GV0 sing 204 n n CAT H19 GV0 sing 205 n n CAT H20 GV0 sing 206 n n CAX H21 GV0 sing 207 n n CAX H22 GV0 sing 208 n n NAL H23 GV0 sing 209 n n CBQ H24 GV0 sing 210 n n CBT H25 GV0 sing 211 n n CBS H26 GV0 sing 212 n n CBK H27 GV0 sing 213 n n CBL H28 GV0 sing 214 n n CBG H29 GV0 sing 215 n n NAJ H30 GV0 sing 216 n n CAO H31 GV0 sing 217 n n CAO H32 GV0 sing 218 n n CAP H33 GV0 sing 219 n n CAP H34 GV0 sing 220 n n NAK H35 GV0 sing 221 n n CBH H36 GV0 sing 222 n n CBM H37 GV0 sing 223 n n CBN H38 GV0 sing 224 n n CBI H39 GV0 sing 225 n n # _atom_sites.entry_id 5IA5 _atom_sites.fract_transf_matrix[1][1] 0.012485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GV0 A 1 1001 1001 GV0 UNL . C 3 EDO A 1 1002 2001 EDO EDO . D 3 EDO A 1 1003 2002 EDO EDO . E 3 EDO A 1 1004 2003 EDO EDO . F 4 HOH A 1 1101 122 HOH HOH . F 4 HOH A 2 1102 123 HOH HOH . F 4 HOH A 3 1103 145 HOH HOH . F 4 HOH A 4 1104 51 HOH HOH . F 4 HOH A 5 1105 32 HOH HOH . F 4 HOH A 6 1106 78 HOH HOH . F 4 HOH A 7 1107 121 HOH HOH . F 4 HOH A 8 1108 88 HOH HOH . F 4 HOH A 9 1109 19 HOH HOH . F 4 HOH A 10 1110 66 HOH HOH . F 4 HOH A 11 1111 50 HOH HOH . F 4 HOH A 12 1112 65 HOH HOH . F 4 HOH A 13 1113 133 HOH HOH . F 4 HOH A 14 1114 47 HOH HOH . F 4 HOH A 15 1115 115 HOH HOH . F 4 HOH A 16 1116 129 HOH HOH . F 4 HOH A 17 1117 9 HOH HOH . F 4 HOH A 18 1118 42 HOH HOH . F 4 HOH A 19 1119 26 HOH HOH . F 4 HOH A 20 1120 97 HOH HOH . F 4 HOH A 21 1121 1 HOH HOH . F 4 HOH A 22 1122 56 HOH HOH . F 4 HOH A 23 1123 20 HOH HOH . F 4 HOH A 24 1124 60 HOH HOH . F 4 HOH A 25 1125 23 HOH HOH . F 4 HOH A 26 1126 11 HOH HOH . F 4 HOH A 27 1127 8 HOH HOH . F 4 HOH A 28 1128 40 HOH HOH . F 4 HOH A 29 1129 86 HOH HOH . F 4 HOH A 30 1130 136 HOH HOH . F 4 HOH A 31 1131 34 HOH HOH . F 4 HOH A 32 1132 25 HOH HOH . F 4 HOH A 33 1133 111 HOH HOH . F 4 HOH A 34 1134 35 HOH HOH . F 4 HOH A 35 1135 93 HOH HOH . F 4 HOH A 36 1136 36 HOH HOH . F 4 HOH A 37 1137 7 HOH HOH . F 4 HOH A 38 1138 44 HOH HOH . F 4 HOH A 39 1139 90 HOH HOH . F 4 HOH A 40 1140 72 HOH HOH . F 4 HOH A 41 1141 5 HOH HOH . F 4 HOH A 42 1142 69 HOH HOH . F 4 HOH A 43 1143 48 HOH HOH . F 4 HOH A 44 1144 31 HOH HOH . F 4 HOH A 45 1145 79 HOH HOH . F 4 HOH A 46 1146 33 HOH HOH . F 4 HOH A 47 1147 16 HOH HOH . F 4 HOH A 48 1148 67 HOH HOH . F 4 HOH A 49 1149 57 HOH HOH . F 4 HOH A 50 1150 2 HOH HOH . F 4 HOH A 51 1151 39 HOH HOH . F 4 HOH A 52 1152 92 HOH HOH . F 4 HOH A 53 1153 87 HOH HOH . F 4 HOH A 54 1154 74 HOH HOH . F 4 HOH A 55 1155 103 HOH HOH . F 4 HOH A 56 1156 15 HOH HOH . F 4 HOH A 57 1157 89 HOH HOH . F 4 HOH A 58 1158 6 HOH HOH . F 4 HOH A 59 1159 52 HOH HOH . F 4 HOH A 60 1160 30 HOH HOH . F 4 HOH A 61 1161 104 HOH HOH . F 4 HOH A 62 1162 4 HOH HOH . F 4 HOH A 63 1163 59 HOH HOH . F 4 HOH A 64 1164 18 HOH HOH . F 4 HOH A 65 1165 91 HOH HOH . F 4 HOH A 66 1166 27 HOH HOH . F 4 HOH A 67 1167 84 HOH HOH . F 4 HOH A 68 1168 142 HOH HOH . F 4 HOH A 69 1169 94 HOH HOH . F 4 HOH A 70 1170 37 HOH HOH . F 4 HOH A 71 1171 58 HOH HOH . F 4 HOH A 72 1172 13 HOH HOH . F 4 HOH A 73 1173 53 HOH HOH . F 4 HOH A 74 1174 41 HOH HOH . F 4 HOH A 75 1175 85 HOH HOH . F 4 HOH A 76 1176 70 HOH HOH . F 4 HOH A 77 1177 106 HOH HOH . F 4 HOH A 78 1178 24 HOH HOH . F 4 HOH A 79 1179 62 HOH HOH . F 4 HOH A 80 1180 14 HOH HOH . F 4 HOH A 81 1181 107 HOH HOH . F 4 HOH A 82 1182 3 HOH HOH . F 4 HOH A 83 1183 68 HOH HOH . F 4 HOH A 84 1184 17 HOH HOH . F 4 HOH A 85 1185 12 HOH HOH . F 4 HOH A 86 1186 101 HOH HOH . F 4 HOH A 87 1187 22 HOH HOH . F 4 HOH A 88 1188 46 HOH HOH . F 4 HOH A 89 1189 38 HOH HOH . F 4 HOH A 90 1190 10 HOH HOH . F 4 HOH A 91 1191 71 HOH HOH . F 4 HOH A 92 1192 80 HOH HOH . F 4 HOH A 93 1193 105 HOH HOH . F 4 HOH A 94 1194 55 HOH HOH . F 4 HOH A 95 1195 77 HOH HOH . F 4 HOH A 96 1196 21 HOH HOH . F 4 HOH A 97 1197 61 HOH HOH . F 4 HOH A 98 1198 113 HOH HOH . F 4 HOH A 99 1199 112 HOH HOH . F 4 HOH A 100 1200 63 HOH HOH . F 4 HOH A 101 1201 114 HOH HOH . F 4 HOH A 102 1202 45 HOH HOH . F 4 HOH A 103 1203 54 HOH HOH . F 4 HOH A 104 1204 119 HOH HOH . F 4 HOH A 105 1205 127 HOH HOH . F 4 HOH A 106 1206 130 HOH HOH . F 4 HOH A 107 1207 28 HOH HOH . F 4 HOH A 108 1208 108 HOH HOH . F 4 HOH A 109 1209 43 HOH HOH . F 4 HOH A 110 1210 132 HOH HOH . F 4 HOH A 111 1211 120 HOH HOH . F 4 HOH A 112 1212 99 HOH HOH . F 4 HOH A 113 1213 76 HOH HOH . F 4 HOH A 114 1214 134 HOH HOH . F 4 HOH A 115 1215 128 HOH HOH . F 4 HOH A 116 1216 83 HOH HOH . F 4 HOH A 117 1217 125 HOH HOH . F 4 HOH A 118 1218 98 HOH HOH . F 4 HOH A 119 1219 95 HOH HOH . F 4 HOH A 120 1220 138 HOH HOH . F 4 HOH A 121 1221 117 HOH HOH . F 4 HOH A 122 1222 135 HOH HOH . F 4 HOH A 123 1223 75 HOH HOH . F 4 HOH A 124 1224 118 HOH HOH . F 4 HOH A 125 1225 124 HOH HOH . F 4 HOH A 126 1226 116 HOH HOH . F 4 HOH A 127 1227 126 HOH HOH . F 4 HOH A 128 1228 110 HOH HOH . F 4 HOH A 129 1229 137 HOH HOH . F 4 HOH A 130 1230 82 HOH HOH . F 4 HOH A 131 1231 81 HOH HOH . F 4 HOH A 132 1232 73 HOH HOH . F 4 HOH A 133 1233 100 HOH HOH . F 4 HOH A 134 1234 49 HOH HOH . F 4 HOH A 135 1235 146 HOH HOH . F 4 HOH A 136 1236 141 HOH HOH . F 4 HOH A 137 1237 29 HOH HOH . F 4 HOH A 138 1238 131 HOH HOH . F 4 HOH A 139 1239 109 HOH HOH . F 4 HOH A 140 1240 96 HOH HOH . F 4 HOH A 141 1241 144 HOH HOH . F 4 HOH A 142 1242 64 HOH HOH . F 4 HOH A 143 1243 140 HOH HOH . F 4 HOH A 144 1244 143 HOH HOH . F 4 HOH A 145 1245 102 HOH HOH . F 4 HOH A 146 1246 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV GV0 . . . B 2 10.674 -1.216 95.856 1 65.25 ? CAV GV0 1001 A 1 HETATM 2 C CAZ GV0 . . . B 2 10.551 0.205 96.463 1 67.59 ? CAZ GV0 1001 A 1 HETATM 3 N NAI GV0 . . . B 2 9.212 0.451 97.026 1 60.81 ? NAI GV0 1001 A 1 HETATM 4 C CBC GV0 . . . B 2 9.186 1.772 97.678 1 59.9 ? CBC GV0 1001 A 1 HETATM 5 C CBA GV0 . . . B 2 8.923 -0.591 98.021 1 56.65 ? CBA GV0 1001 A 1 HETATM 6 C CAW GV0 . . . B 2 8.928 -1.974 97.364 1 55.74 ? CAW GV0 1001 A 1 HETATM 7 N NAG GV0 . . . B 2 10.24 -2.3 96.771 1 58.02 ? NAG GV0 1001 A 1 HETATM 8 C CAQ GV0 . . . B 2 11.247 -2.888 97.702 1 50.13 ? CAQ GV0 1001 A 1 HETATM 9 C CAU GV0 . . . B 2 12.174 -1.905 98.415 1 50.24 ? CAU GV0 1001 A 1 HETATM 10 C CAY GV0 . . . B 2 13.277 -2.714 99.034 1 37.36 ? CAY GV0 1001 A 1 HETATM 11 C CAT GV0 . . . B 2 10.571 -3.83 98.724 1 47.97 ? CAT GV0 1001 A 1 HETATM 12 C CAX GV0 . . . B 2 11.272 -3.88 100.097 1 33.52 ? CAX GV0 1001 A 1 HETATM 13 N NAH GV0 . . . B 2 12.72 -3.63 100.044 1 37.01 ? NAH GV0 1001 A 1 HETATM 14 C CBB GV0 . . . B 2 13.573 -4.203 100.915 1 31.96 ? CBB GV0 1001 A 1 HETATM 15 O OAE GV0 . . . B 2 14.775 -3.944 100.821 1 34.99 ? OAE GV0 1001 A 1 HETATM 16 N NAL GV0 . . . B 2 13.04 -5.004 101.857 1 28.89 ? NAL GV0 1001 A 1 HETATM 17 C CBJ GV0 . . . B 2 13.773 -5.695 102.77 1 29.36 ? CBJ GV0 1001 A 1 HETATM 18 C CBQ GV0 . . . B 2 15.1 -6.09 102.566 1 24.68 ? CBQ GV0 1001 A 1 HETATM 19 N NAM GV0 . . . B 2 13.156 -6.068 103.9 1 26.32 ? NAM GV0 1001 A 1 HETATM 20 C CBT GV0 . . . B 2 13.819 -6.794 104.888 1 27.79 ? CBT GV0 1001 A 1 HETATM 21 C CBS GV0 . . . B 2 15.147 -7.149 104.708 1 22.09 ? CBS GV0 1001 A 1 HETATM 22 C CBR GV0 . . . B 2 15.799 -6.809 103.528 1 25.62 ? CBR GV0 1001 A 1 HETATM 23 O OAF GV0 . . . B 2 17.118 -7.167 103.291 1 27.22 ? OAF GV0 1001 A 1 HETATM 24 C CBO GV0 . . . B 2 17.9 -7.411 104.397 1 28.66 ? CBO GV0 1001 A 1 HETATM 25 C CBK GV0 . . . B 2 18.199 -6.363 105.26 1 22.49 ? CBK GV0 1001 A 1 HETATM 26 C CBF GV0 . . . B 2 18.989 -6.589 106.38 1 27.61 ? CBF GV0 1001 A 1 HETATM 27 F FAA GV0 . . . B 2 19.246 -5.571 107.19 1 26.65 ? FAA GV0 1001 A 1 HETATM 28 C CBL GV0 . . . B 2 18.445 -8.672 104.668 1 29.45 ? CBL GV0 1001 A 1 HETATM 29 C CBG GV0 . . . B 2 19.245 -8.905 105.796 1 27.77 ? CBG GV0 1001 A 1 HETATM 30 C CBD GV0 . . . B 2 19.533 -7.841 106.665 1 25.3 ? CBD GV0 1001 A 1 HETATM 31 N NAJ GV0 . . . B 2 20.264 -7.9 107.805 1 22.11 ? NAJ GV0 1001 A 1 HETATM 32 C CAR GV0 . . . B 2 21.286 -8.769 107.993 1 28.42 ? CAR GV0 1001 A 1 HETATM 33 O OAC GV0 . . . B 2 21.695 -9.57 107.147 1 31.58 ? OAC GV0 1001 A 1 HETATM 34 C CAN GV0 . . . B 2 21.998 -8.714 109.357 1 25.17 ? CAN GV0 1001 A 1 HETATM 35 C CAO GV0 . . . B 2 23.509 -9.071 109.35 1 30.28 ? CAO GV0 1001 A 1 HETATM 36 C CAP GV0 . . . B 2 22.513 -10.069 109.932 1 26.77 ? CAP GV0 1001 A 1 HETATM 37 C CAS GV0 . . . B 2 21.476 -7.674 110.369 1 27.72 ? CAS GV0 1001 A 1 HETATM 38 O OAD GV0 . . . B 2 20.625 -6.837 110.039 1 23.77 ? OAD GV0 1001 A 1 HETATM 39 N NAK GV0 . . . B 2 22.039 -7.774 111.606 1 27.54 ? NAK GV0 1001 A 1 HETATM 40 C CBE GV0 . . . B 2 21.704 -6.927 112.61 1 24.56 ? CBE GV0 1001 A 1 HETATM 41 C CBH GV0 . . . B 2 22.705 -6.454 113.436 1 26.26 ? CBH GV0 1001 A 1 HETATM 42 C CBM GV0 . . . B 2 22.39 -5.595 114.488 1 29.85 ? CBM GV0 1001 A 1 HETATM 43 C CBP GV0 . . . B 2 21.071 -5.236 114.737 1 33.12 ? CBP GV0 1001 A 1 HETATM 44 F FAB GV0 . . . B 2 20.773 -4.386 115.769 1 36.36 ? FAB GV0 1001 A 1 HETATM 45 C CBN GV0 . . . B 2 20.052 -5.716 113.932 1 27.24 ? CBN GV0 1001 A 1 HETATM 46 C CBI GV0 . . . B 2 20.376 -6.58 112.887 1 25.75 ? CBI GV0 1001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 46 #