data_5IB5 # _model_server_result.job_id JKE6KrjTSX6cXQfyd7jLSQ _model_server_result.datetime_utc '2024-11-05 01:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ib5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 5IB5 # _exptl.entry_id 5IB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.74 _cell.angle_gamma 90 _cell.entry_id 5IB5 _cell.length_a 51.004 _cell.length_b 81.677 _cell.length_c 126.474 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,O,P,Q 1 1 D,E,F,J,K,L,M,N,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A N GLY 1 A GLY 1 1_555 G CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 A NE2 HIS 3 A HIS 3 1_555 G CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 A OE2 GLU 76 A GLU 76 1_555 I CU CU . C CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 A NE2 HIS 191 A HIS 191 1_555 H CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc5 A OE2 GLU 254 A GLU 254 1_555 H CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 G CU CU . A CU 301 1_555 O O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc7 H CU CU . A CU 302 1_555 E OE2 GLU 45 E GLU 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc8 O O HOH . A HOH 401 1_555 I CU CU . C CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc9 C NE2 HIS 8 C HIS 8 1_555 I CU CU . C CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc10 I CU CU . C CU 101 1_555 Q O HOH . C HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc11 D N GLY 1 D GLY 1 1_555 J CU CU . D CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 D NE2 HIS 3 D HIS 3 1_555 J CU CU . D CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc13 R O HOH . D HOH 402 1_555 L CU CU . E CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc14 E OD1 ASP 97 E ASP 96 1_555 L CU CU . E CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc15 F NE2 HIS 8 F HIS 8 1_555 M CU CU . F CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc16 M CU CU . F CU 101 1_555 T O HOH . F HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc17 M CU CU . F CU 101 1_555 T O HOH . F HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IB5 _atom_sites.fract_transf_matrix[1][1] 0.019606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002318 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CU A 1 301 3 CU CU . H 4 CU A 1 302 6 CU CU . I 4 CU C 1 101 1 CU CU . J 4 CU D 1 301 4 CU CU . K 5 GOL D 1 302 1 GOL GOL . L 4 CU E 1 101 5 CU CU . M 4 CU F 1 101 2 CU CU . N 6 CL F 1 102 1 CL CL . O 7 HOH A 1 401 223 HOH HOH . O 7 HOH A 2 402 227 HOH HOH . O 7 HOH A 3 403 92 HOH HOH . O 7 HOH A 4 404 105 HOH HOH . O 7 HOH A 5 405 67 HOH HOH . O 7 HOH A 6 406 21 HOH HOH . O 7 HOH A 7 407 124 HOH HOH . O 7 HOH A 8 408 147 HOH HOH . O 7 HOH A 9 409 169 HOH HOH . O 7 HOH A 10 410 59 HOH HOH . O 7 HOH A 11 411 63 HOH HOH . O 7 HOH A 12 412 61 HOH HOH . O 7 HOH A 13 413 127 HOH HOH . O 7 HOH A 14 414 174 HOH HOH . O 7 HOH A 15 415 207 HOH HOH . O 7 HOH A 16 416 128 HOH HOH . O 7 HOH A 17 417 26 HOH HOH . O 7 HOH A 18 418 7 HOH HOH . O 7 HOH A 19 419 182 HOH HOH . O 7 HOH A 20 420 217 HOH HOH . O 7 HOH A 21 421 106 HOH HOH . O 7 HOH A 22 422 45 HOH HOH . O 7 HOH A 23 423 5 HOH HOH . O 7 HOH A 24 424 113 HOH HOH . O 7 HOH A 25 425 34 HOH HOH . O 7 HOH A 26 426 75 HOH HOH . O 7 HOH A 27 427 198 HOH HOH . O 7 HOH A 28 428 232 HOH HOH . O 7 HOH A 29 429 84 HOH HOH . O 7 HOH A 30 430 119 HOH HOH . O 7 HOH A 31 431 24 HOH HOH . O 7 HOH A 32 432 185 HOH HOH . O 7 HOH A 33 433 33 HOH HOH . O 7 HOH A 34 434 140 HOH HOH . O 7 HOH A 35 435 41 HOH HOH . O 7 HOH A 36 436 97 HOH HOH . O 7 HOH A 37 437 38 HOH HOH . O 7 HOH A 38 438 16 HOH HOH . O 7 HOH A 39 439 229 HOH HOH . O 7 HOH A 40 440 208 HOH HOH . O 7 HOH A 41 441 219 HOH HOH . O 7 HOH A 42 442 82 HOH HOH . O 7 HOH A 43 443 131 HOH HOH . O 7 HOH A 44 444 142 HOH HOH . O 7 HOH A 45 445 197 HOH HOH . O 7 HOH A 46 446 96 HOH HOH . O 7 HOH A 47 447 218 HOH HOH . O 7 HOH A 48 448 116 HOH HOH . O 7 HOH A 49 449 55 HOH HOH . O 7 HOH A 50 450 173 HOH HOH . O 7 HOH A 51 451 43 HOH HOH . O 7 HOH A 52 452 150 HOH HOH . O 7 HOH A 53 453 166 HOH HOH . O 7 HOH A 54 454 136 HOH HOH . O 7 HOH A 55 455 20 HOH HOH . O 7 HOH A 56 456 123 HOH HOH . O 7 HOH A 57 457 58 HOH HOH . O 7 HOH A 58 458 202 HOH HOH . O 7 HOH A 59 459 145 HOH HOH . O 7 HOH A 60 460 206 HOH HOH . O 7 HOH A 61 461 180 HOH HOH . O 7 HOH A 62 462 203 HOH HOH . O 7 HOH A 63 463 204 HOH HOH . O 7 HOH A 64 464 224 HOH HOH . P 7 HOH B 1 101 72 HOH HOH . P 7 HOH B 2 102 121 HOH HOH . P 7 HOH B 3 103 25 HOH HOH . P 7 HOH B 4 104 110 HOH HOH . P 7 HOH B 5 105 19 HOH HOH . P 7 HOH B 6 106 205 HOH HOH . P 7 HOH B 7 107 40 HOH HOH . P 7 HOH B 8 108 74 HOH HOH . P 7 HOH B 9 109 111 HOH HOH . P 7 HOH B 10 110 170 HOH HOH . P 7 HOH B 11 111 8 HOH HOH . P 7 HOH B 12 112 51 HOH HOH . P 7 HOH B 13 113 200 HOH HOH . P 7 HOH B 14 114 85 HOH HOH . P 7 HOH B 15 115 98 HOH HOH . P 7 HOH B 16 116 114 HOH HOH . P 7 HOH B 17 117 30 HOH HOH . P 7 HOH B 18 118 201 HOH HOH . P 7 HOH B 19 119 149 HOH HOH . P 7 HOH B 20 120 159 HOH HOH . Q 7 HOH C 1 201 189 HOH HOH . Q 7 HOH C 2 202 23 HOH HOH . Q 7 HOH C 3 203 148 HOH HOH . Q 7 HOH C 4 204 212 HOH HOH . Q 7 HOH C 5 205 188 HOH HOH . R 7 HOH D 1 401 195 HOH HOH . R 7 HOH D 2 402 221 HOH HOH . R 7 HOH D 3 403 11 HOH HOH . R 7 HOH D 4 404 152 HOH HOH . R 7 HOH D 5 405 183 HOH HOH . R 7 HOH D 6 406 76 HOH HOH . R 7 HOH D 7 407 81 HOH HOH . R 7 HOH D 8 408 134 HOH HOH . R 7 HOH D 9 409 35 HOH HOH . R 7 HOH D 10 410 13 HOH HOH . R 7 HOH D 11 411 139 HOH HOH . R 7 HOH D 12 412 66 HOH HOH . R 7 HOH D 13 413 138 HOH HOH . R 7 HOH D 14 414 135 HOH HOH . R 7 HOH D 15 415 32 HOH HOH . R 7 HOH D 16 416 4 HOH HOH . R 7 HOH D 17 417 88 HOH HOH . R 7 HOH D 18 418 37 HOH HOH . R 7 HOH D 19 419 27 HOH HOH . R 7 HOH D 20 420 36 HOH HOH . R 7 HOH D 21 421 14 HOH HOH . R 7 HOH D 22 422 62 HOH HOH . R 7 HOH D 23 423 73 HOH HOH . R 7 HOH D 24 424 47 HOH HOH . R 7 HOH D 25 425 125 HOH HOH . R 7 HOH D 26 426 39 HOH HOH . R 7 HOH D 27 427 53 HOH HOH . R 7 HOH D 28 428 42 HOH HOH . R 7 HOH D 29 429 28 HOH HOH . R 7 HOH D 30 430 79 HOH HOH . R 7 HOH D 31 431 50 HOH HOH . R 7 HOH D 32 432 52 HOH HOH . R 7 HOH D 33 433 29 HOH HOH . R 7 HOH D 34 434 46 HOH HOH . R 7 HOH D 35 435 231 HOH HOH . R 7 HOH D 36 436 9 HOH HOH . R 7 HOH D 37 437 49 HOH HOH . R 7 HOH D 38 438 22 HOH HOH . R 7 HOH D 39 439 64 HOH HOH . R 7 HOH D 40 440 17 HOH HOH . R 7 HOH D 41 441 196 HOH HOH . R 7 HOH D 42 442 112 HOH HOH . R 7 HOH D 43 443 103 HOH HOH . R 7 HOH D 44 444 146 HOH HOH . R 7 HOH D 45 445 65 HOH HOH . R 7 HOH D 46 446 31 HOH HOH . R 7 HOH D 47 447 68 HOH HOH . R 7 HOH D 48 448 155 HOH HOH . R 7 HOH D 49 449 130 HOH HOH . R 7 HOH D 50 450 54 HOH HOH . R 7 HOH D 51 451 83 HOH HOH . R 7 HOH D 52 452 158 HOH HOH . R 7 HOH D 53 453 186 HOH HOH . R 7 HOH D 54 454 107 HOH HOH . R 7 HOH D 55 455 177 HOH HOH . R 7 HOH D 56 456 191 HOH HOH . R 7 HOH D 57 457 6 HOH HOH . R 7 HOH D 58 458 104 HOH HOH . R 7 HOH D 59 459 220 HOH HOH . R 7 HOH D 60 460 108 HOH HOH . R 7 HOH D 61 461 94 HOH HOH . R 7 HOH D 62 462 69 HOH HOH . R 7 HOH D 63 463 100 HOH HOH . R 7 HOH D 64 464 194 HOH HOH . R 7 HOH D 65 465 151 HOH HOH . R 7 HOH D 66 466 71 HOH HOH . R 7 HOH D 67 467 179 HOH HOH . R 7 HOH D 68 468 122 HOH HOH . R 7 HOH D 69 469 168 HOH HOH . R 7 HOH D 70 470 167 HOH HOH . R 7 HOH D 71 471 226 HOH HOH . R 7 HOH D 72 472 210 HOH HOH . R 7 HOH D 73 473 211 HOH HOH . R 7 HOH D 74 474 187 HOH HOH . R 7 HOH D 75 475 165 HOH HOH . R 7 HOH D 76 476 99 HOH HOH . R 7 HOH D 77 477 192 HOH HOH . S 7 HOH E 1 201 90 HOH HOH . S 7 HOH E 2 202 15 HOH HOH . S 7 HOH E 3 203 57 HOH HOH . S 7 HOH E 4 204 171 HOH HOH . S 7 HOH E 5 205 56 HOH HOH . S 7 HOH E 6 206 3 HOH HOH . S 7 HOH E 7 207 44 HOH HOH . S 7 HOH E 8 208 78 HOH HOH . S 7 HOH E 9 209 80 HOH HOH . S 7 HOH E 10 210 129 HOH HOH . S 7 HOH E 11 211 86 HOH HOH . S 7 HOH E 12 212 137 HOH HOH . S 7 HOH E 13 213 230 HOH HOH . S 7 HOH E 14 214 133 HOH HOH . S 7 HOH E 15 215 70 HOH HOH . S 7 HOH E 16 216 95 HOH HOH . S 7 HOH E 17 217 126 HOH HOH . S 7 HOH E 18 218 93 HOH HOH . S 7 HOH E 19 219 10 HOH HOH . S 7 HOH E 20 220 184 HOH HOH . S 7 HOH E 21 221 213 HOH HOH . T 7 HOH F 1 201 12 HOH HOH . T 7 HOH F 2 202 214 HOH HOH . T 7 HOH F 3 203 193 HOH HOH . T 7 HOH F 4 204 209 HOH HOH . T 7 HOH F 5 205 222 HOH HOH . T 7 HOH F 6 206 225 HOH HOH . T 7 HOH F 7 207 228 HOH HOH . T 7 HOH F 8 208 216 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 42.308 _atom_site.Cartn_y 40.204 _atom_site.Cartn_z 62.38 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #