data_5IBJ # _model_server_result.job_id Oew4FZiluBcuR6cpPDrQVA _model_server_result.datetime_utc '2024-11-16 17:42:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ibj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5IBJ # _exptl.entry_id 5IBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IBJ _cell.length_a 77.67 _cell.length_b 77.67 _cell.length_c 264.32 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 345 A CYS 345 1_555 E FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc2 E FE HEM . A HEM 404 1_555 H O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 407 n n S O2 SO4 doub 408 n n S O3 SO4 sing 409 n n S O4 SO4 sing 410 n n # _atom_sites.entry_id 5IBJ _atom_sites.fract_transf_matrix[1][1] 0.012875 _atom_sites.fract_transf_matrix[1][2] 0.007433 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 817 SO4 SO4 . C 2 SO4 A 1 402 819 SO4 SO4 . D 2 SO4 A 1 403 820 SO4 SO4 . E 3 HEM A 1 404 462 HEM HEM . F 4 69T A 1 405 1 69T 113 . G 2 SO4 A 1 406 1 SO4 SO4 . H 5 HOH A 1 501 107 HOH HOH . H 5 HOH A 2 502 210 HOH HOH . H 5 HOH A 3 503 73 HOH HOH . H 5 HOH A 4 504 52 HOH HOH . H 5 HOH A 5 505 96 HOH HOH . H 5 HOH A 6 506 77 HOH HOH . H 5 HOH A 7 507 20 HOH HOH . H 5 HOH A 8 508 176 HOH HOH . H 5 HOH A 9 509 44 HOH HOH . H 5 HOH A 10 510 7 HOH HOH . H 5 HOH A 11 511 8 HOH HOH . H 5 HOH A 12 512 88 HOH HOH . H 5 HOH A 13 513 200 HOH HOH . H 5 HOH A 14 514 15 HOH HOH . H 5 HOH A 15 515 60 HOH HOH . H 5 HOH A 16 516 131 HOH HOH . H 5 HOH A 17 517 21 HOH HOH . H 5 HOH A 18 518 83 HOH HOH . H 5 HOH A 19 519 143 HOH HOH . H 5 HOH A 20 520 29 HOH HOH . H 5 HOH A 21 521 145 HOH HOH . H 5 HOH A 22 522 6 HOH HOH . H 5 HOH A 23 523 91 HOH HOH . H 5 HOH A 24 524 233 HOH HOH . H 5 HOH A 25 525 93 HOH HOH . H 5 HOH A 26 526 138 HOH HOH . H 5 HOH A 27 527 140 HOH HOH . H 5 HOH A 28 528 2 HOH HOH . H 5 HOH A 29 529 66 HOH HOH . H 5 HOH A 30 530 43 HOH HOH . H 5 HOH A 31 531 195 HOH HOH . H 5 HOH A 32 532 109 HOH HOH . H 5 HOH A 33 533 13 HOH HOH . H 5 HOH A 34 534 49 HOH HOH . H 5 HOH A 35 535 68 HOH HOH . H 5 HOH A 36 536 178 HOH HOH . H 5 HOH A 37 537 234 HOH HOH . H 5 HOH A 38 538 36 HOH HOH . H 5 HOH A 39 539 53 HOH HOH . H 5 HOH A 40 540 181 HOH HOH . H 5 HOH A 41 541 219 HOH HOH . H 5 HOH A 42 542 12 HOH HOH . H 5 HOH A 43 543 3 HOH HOH . H 5 HOH A 44 544 103 HOH HOH . H 5 HOH A 45 545 23 HOH HOH . H 5 HOH A 46 546 38 HOH HOH . H 5 HOH A 47 547 45 HOH HOH . H 5 HOH A 48 548 80 HOH HOH . H 5 HOH A 49 549 207 HOH HOH . H 5 HOH A 50 550 42 HOH HOH . H 5 HOH A 51 551 17 HOH HOH . H 5 HOH A 52 552 117 HOH HOH . H 5 HOH A 53 553 159 HOH HOH . H 5 HOH A 54 554 10 HOH HOH . H 5 HOH A 55 555 154 HOH HOH . H 5 HOH A 56 556 35 HOH HOH . H 5 HOH A 57 557 76 HOH HOH . H 5 HOH A 58 558 161 HOH HOH . H 5 HOH A 59 559 1 HOH HOH . H 5 HOH A 60 560 164 HOH HOH . H 5 HOH A 61 561 99 HOH HOH . H 5 HOH A 62 562 55 HOH HOH . H 5 HOH A 63 563 105 HOH HOH . H 5 HOH A 64 564 74 HOH HOH . H 5 HOH A 65 565 51 HOH HOH . H 5 HOH A 66 566 90 HOH HOH . H 5 HOH A 67 567 30 HOH HOH . H 5 HOH A 68 568 104 HOH HOH . H 5 HOH A 69 569 106 HOH HOH . H 5 HOH A 70 570 198 HOH HOH . H 5 HOH A 71 571 14 HOH HOH . H 5 HOH A 72 572 25 HOH HOH . H 5 HOH A 73 573 108 HOH HOH . H 5 HOH A 74 574 34 HOH HOH . H 5 HOH A 75 575 202 HOH HOH . H 5 HOH A 76 576 149 HOH HOH . H 5 HOH A 77 577 26 HOH HOH . H 5 HOH A 78 578 220 HOH HOH . H 5 HOH A 79 579 18 HOH HOH . H 5 HOH A 80 580 63 HOH HOH . H 5 HOH A 81 581 151 HOH HOH . H 5 HOH A 82 582 211 HOH HOH . H 5 HOH A 83 583 11 HOH HOH . H 5 HOH A 84 584 226 HOH HOH . H 5 HOH A 85 585 57 HOH HOH . H 5 HOH A 86 586 127 HOH HOH . H 5 HOH A 87 587 179 HOH HOH . H 5 HOH A 88 588 79 HOH HOH . H 5 HOH A 89 589 19 HOH HOH . H 5 HOH A 90 590 227 HOH HOH . H 5 HOH A 91 591 142 HOH HOH . H 5 HOH A 92 592 184 HOH HOH . H 5 HOH A 93 593 54 HOH HOH . H 5 HOH A 94 594 162 HOH HOH . H 5 HOH A 95 595 5 HOH HOH . H 5 HOH A 96 596 64 HOH HOH . H 5 HOH A 97 597 98 HOH HOH . H 5 HOH A 98 598 174 HOH HOH . H 5 HOH A 99 599 230 HOH HOH . H 5 HOH A 100 600 39 HOH HOH . H 5 HOH A 101 601 177 HOH HOH . H 5 HOH A 102 602 92 HOH HOH . H 5 HOH A 103 603 50 HOH HOH . H 5 HOH A 104 604 87 HOH HOH . H 5 HOH A 105 605 190 HOH HOH . H 5 HOH A 106 606 139 HOH HOH . H 5 HOH A 107 607 125 HOH HOH . H 5 HOH A 108 608 16 HOH HOH . H 5 HOH A 109 609 102 HOH HOH . H 5 HOH A 110 610 132 HOH HOH . H 5 HOH A 111 611 136 HOH HOH . H 5 HOH A 112 612 62 HOH HOH . H 5 HOH A 113 613 72 HOH HOH . H 5 HOH A 114 614 180 HOH HOH . H 5 HOH A 115 615 24 HOH HOH . H 5 HOH A 116 616 186 HOH HOH . H 5 HOH A 117 617 100 HOH HOH . H 5 HOH A 118 618 165 HOH HOH . H 5 HOH A 119 619 192 HOH HOH . H 5 HOH A 120 620 191 HOH HOH . H 5 HOH A 121 621 130 HOH HOH . H 5 HOH A 122 622 156 HOH HOH . H 5 HOH A 123 623 225 HOH HOH . H 5 HOH A 124 624 122 HOH HOH . H 5 HOH A 125 625 82 HOH HOH . H 5 HOH A 126 626 155 HOH HOH . H 5 HOH A 127 627 212 HOH HOH . H 5 HOH A 128 628 120 HOH HOH . H 5 HOH A 129 629 101 HOH HOH . H 5 HOH A 130 630 224 HOH HOH . H 5 HOH A 131 631 59 HOH HOH . H 5 HOH A 132 632 167 HOH HOH . H 5 HOH A 133 633 85 HOH HOH . H 5 HOH A 134 634 48 HOH HOH . H 5 HOH A 135 635 4 HOH HOH . H 5 HOH A 136 636 37 HOH HOH . H 5 HOH A 137 637 75 HOH HOH . H 5 HOH A 138 638 28 HOH HOH . H 5 HOH A 139 639 47 HOH HOH . H 5 HOH A 140 640 118 HOH HOH . H 5 HOH A 141 641 193 HOH HOH . H 5 HOH A 142 642 41 HOH HOH . H 5 HOH A 143 643 135 HOH HOH . H 5 HOH A 144 644 153 HOH HOH . H 5 HOH A 145 645 115 HOH HOH . H 5 HOH A 146 646 196 HOH HOH . H 5 HOH A 147 647 32 HOH HOH . H 5 HOH A 148 648 137 HOH HOH . H 5 HOH A 149 649 22 HOH HOH . H 5 HOH A 150 650 46 HOH HOH . H 5 HOH A 151 651 123 HOH HOH . H 5 HOH A 152 652 209 HOH HOH . H 5 HOH A 153 653 71 HOH HOH . H 5 HOH A 154 654 110 HOH HOH . H 5 HOH A 155 655 40 HOH HOH . H 5 HOH A 156 656 69 HOH HOH . H 5 HOH A 157 657 111 HOH HOH . H 5 HOH A 158 658 222 HOH HOH . H 5 HOH A 159 659 33 HOH HOH . H 5 HOH A 160 660 194 HOH HOH . H 5 HOH A 161 661 84 HOH HOH . H 5 HOH A 162 662 201 HOH HOH . H 5 HOH A 163 663 163 HOH HOH . H 5 HOH A 164 664 172 HOH HOH . H 5 HOH A 165 665 185 HOH HOH . H 5 HOH A 166 666 228 HOH HOH . H 5 HOH A 167 667 31 HOH HOH . H 5 HOH A 168 668 86 HOH HOH . H 5 HOH A 169 669 218 HOH HOH . H 5 HOH A 170 670 150 HOH HOH . H 5 HOH A 171 671 27 HOH HOH . H 5 HOH A 172 672 81 HOH HOH . H 5 HOH A 173 673 214 HOH HOH . H 5 HOH A 174 674 166 HOH HOH . H 5 HOH A 175 675 157 HOH HOH . H 5 HOH A 176 676 61 HOH HOH . H 5 HOH A 177 677 187 HOH HOH . H 5 HOH A 178 678 56 HOH HOH . H 5 HOH A 179 679 168 HOH HOH . H 5 HOH A 180 680 169 HOH HOH . H 5 HOH A 181 681 199 HOH HOH . H 5 HOH A 182 682 97 HOH HOH . H 5 HOH A 183 683 148 HOH HOH . H 5 HOH A 184 684 203 HOH HOH . H 5 HOH A 185 685 70 HOH HOH . H 5 HOH A 186 686 223 HOH HOH . H 5 HOH A 187 687 119 HOH HOH . H 5 HOH A 188 688 65 HOH HOH . H 5 HOH A 189 689 128 HOH HOH . H 5 HOH A 190 690 197 HOH HOH . H 5 HOH A 191 691 213 HOH HOH . H 5 HOH A 192 692 229 HOH HOH . H 5 HOH A 193 693 126 HOH HOH . H 5 HOH A 194 694 116 HOH HOH . H 5 HOH A 195 695 215 HOH HOH . H 5 HOH A 196 696 144 HOH HOH . H 5 HOH A 197 697 146 HOH HOH . H 5 HOH A 198 698 95 HOH HOH . H 5 HOH A 199 699 232 HOH HOH . H 5 HOH A 200 700 173 HOH HOH . H 5 HOH A 201 701 134 HOH HOH . H 5 HOH A 202 702 147 HOH HOH . H 5 HOH A 203 703 175 HOH HOH . H 5 HOH A 204 704 160 HOH HOH . H 5 HOH A 205 705 183 HOH HOH . H 5 HOH A 206 706 113 HOH HOH . H 5 HOH A 207 707 67 HOH HOH . H 5 HOH A 208 708 221 HOH HOH . H 5 HOH A 209 709 171 HOH HOH . H 5 HOH A 210 710 206 HOH HOH . H 5 HOH A 211 711 112 HOH HOH . H 5 HOH A 212 712 124 HOH HOH . H 5 HOH A 213 713 121 HOH HOH . H 5 HOH A 214 714 170 HOH HOH . H 5 HOH A 215 715 9 HOH HOH . H 5 HOH A 216 716 129 HOH HOH . H 5 HOH A 217 717 78 HOH HOH . H 5 HOH A 218 718 152 HOH HOH . H 5 HOH A 219 719 217 HOH HOH . H 5 HOH A 220 720 114 HOH HOH . H 5 HOH A 221 721 158 HOH HOH . H 5 HOH A 222 722 94 HOH HOH . H 5 HOH A 223 723 205 HOH HOH . H 5 HOH A 224 724 58 HOH HOH . H 5 HOH A 225 725 208 HOH HOH . H 5 HOH A 226 726 89 HOH HOH . H 5 HOH A 227 727 133 HOH HOH . H 5 HOH A 228 728 188 HOH HOH . H 5 HOH A 229 729 141 HOH HOH . H 5 HOH A 230 730 216 HOH HOH . H 5 HOH A 231 731 189 HOH HOH . H 5 HOH A 232 732 231 HOH HOH . H 5 HOH A 233 733 204 HOH HOH . H 5 HOH A 234 734 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 8.639 35.265 13.136 1 61.07 ? S SO4 401 A 1 HETATM 2 O O1 SO4 . . . B 2 8.321 35.684 11.769 1 69.17 ? O1 SO4 401 A 1 HETATM 3 O O2 SO4 . . . B 2 9.003 33.852 13.137 1 35.22 ? O2 SO4 401 A 1 HETATM 4 O O3 SO4 . . . B 2 7.468 35.48 13.986 1 62.39 ? O3 SO4 401 A 1 HETATM 5 O O4 SO4 . . . B 2 9.761 36.042 13.659 1 46.85 ? O4 SO4 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 951 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 5 #