data_5IBN # _model_server_result.job_id i0jBeVVnHIvrKpi48-pAPg _model_server_result.datetime_utc '2024-11-21 23:42:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ibn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5IBN # _exptl.entry_id 5IBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IBN _cell.length_a 32.08 _cell.length_b 52.46 _cell.length_c 71.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5IBN _atom_sites.fract_transf_matrix[1][1] 0.031172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 1 CL CL . C 3 GOL A 1 502 1 GOL GOL . D 3 GOL A 1 503 2 GOL GOL . E 3 GOL A 1 504 3 GOL GOL . F 3 GOL A 1 505 4 GOL GOL . G 3 GOL A 1 506 5 GOL GOL . H 4 PGE A 1 507 1 PGE PGE . I 4 PGE A 1 508 2 PGE PGE . J 5 HOH A 1 601 4 HOH HOH . J 5 HOH A 2 602 160 HOH HOH . J 5 HOH A 3 603 141 HOH HOH . J 5 HOH A 4 604 16 HOH HOH . J 5 HOH A 5 605 77 HOH HOH . J 5 HOH A 6 606 95 HOH HOH . J 5 HOH A 7 607 162 HOH HOH . J 5 HOH A 8 608 28 HOH HOH . J 5 HOH A 9 609 20 HOH HOH . J 5 HOH A 10 610 1 HOH HOH . J 5 HOH A 11 611 78 HOH HOH . J 5 HOH A 12 612 8 HOH HOH . J 5 HOH A 13 613 50 HOH HOH . J 5 HOH A 14 614 82 HOH HOH . J 5 HOH A 15 615 148 HOH HOH . J 5 HOH A 16 616 29 HOH HOH . J 5 HOH A 17 617 153 HOH HOH . J 5 HOH A 18 618 91 HOH HOH . J 5 HOH A 19 619 155 HOH HOH . J 5 HOH A 20 620 26 HOH HOH . J 5 HOH A 21 621 109 HOH HOH . J 5 HOH A 22 622 6 HOH HOH . J 5 HOH A 23 623 46 HOH HOH . J 5 HOH A 24 624 9 HOH HOH . J 5 HOH A 25 625 60 HOH HOH . J 5 HOH A 26 626 93 HOH HOH . J 5 HOH A 27 627 22 HOH HOH . J 5 HOH A 28 628 52 HOH HOH . J 5 HOH A 29 629 38 HOH HOH . J 5 HOH A 30 630 23 HOH HOH . J 5 HOH A 31 631 73 HOH HOH . J 5 HOH A 32 632 150 HOH HOH . J 5 HOH A 33 633 45 HOH HOH . J 5 HOH A 34 634 35 HOH HOH . J 5 HOH A 35 635 159 HOH HOH . J 5 HOH A 36 636 25 HOH HOH . J 5 HOH A 37 637 158 HOH HOH . J 5 HOH A 38 638 55 HOH HOH . J 5 HOH A 39 639 47 HOH HOH . J 5 HOH A 40 640 71 HOH HOH . J 5 HOH A 41 641 68 HOH HOH . J 5 HOH A 42 642 2 HOH HOH . J 5 HOH A 43 643 123 HOH HOH . J 5 HOH A 44 644 5 HOH HOH . J 5 HOH A 45 645 21 HOH HOH . J 5 HOH A 46 646 58 HOH HOH . J 5 HOH A 47 647 34 HOH HOH . J 5 HOH A 48 648 59 HOH HOH . J 5 HOH A 49 649 163 HOH HOH . J 5 HOH A 50 650 96 HOH HOH . J 5 HOH A 51 651 24 HOH HOH . J 5 HOH A 52 652 12 HOH HOH . J 5 HOH A 53 653 111 HOH HOH . J 5 HOH A 54 654 40 HOH HOH . J 5 HOH A 55 655 42 HOH HOH . J 5 HOH A 56 656 57 HOH HOH . J 5 HOH A 57 657 17 HOH HOH . J 5 HOH A 58 658 13 HOH HOH . J 5 HOH A 59 659 49 HOH HOH . J 5 HOH A 60 660 108 HOH HOH . J 5 HOH A 61 661 67 HOH HOH . J 5 HOH A 62 662 41 HOH HOH . J 5 HOH A 63 663 30 HOH HOH . J 5 HOH A 64 664 18 HOH HOH . J 5 HOH A 65 665 131 HOH HOH . J 5 HOH A 66 666 11 HOH HOH . J 5 HOH A 67 667 161 HOH HOH . J 5 HOH A 68 668 115 HOH HOH . J 5 HOH A 69 669 7 HOH HOH . J 5 HOH A 70 670 65 HOH HOH . J 5 HOH A 71 671 14 HOH HOH . J 5 HOH A 72 672 154 HOH HOH . J 5 HOH A 73 673 94 HOH HOH . J 5 HOH A 74 674 15 HOH HOH . J 5 HOH A 75 675 104 HOH HOH . J 5 HOH A 76 676 74 HOH HOH . J 5 HOH A 77 677 33 HOH HOH . J 5 HOH A 78 678 51 HOH HOH . J 5 HOH A 79 679 105 HOH HOH . J 5 HOH A 80 680 103 HOH HOH . J 5 HOH A 81 681 98 HOH HOH . J 5 HOH A 82 682 54 HOH HOH . J 5 HOH A 83 683 61 HOH HOH . J 5 HOH A 84 684 134 HOH HOH . J 5 HOH A 85 685 156 HOH HOH . J 5 HOH A 86 686 56 HOH HOH . J 5 HOH A 87 687 92 HOH HOH . J 5 HOH A 88 688 114 HOH HOH . J 5 HOH A 89 689 106 HOH HOH . J 5 HOH A 90 690 110 HOH HOH . J 5 HOH A 91 691 152 HOH HOH . J 5 HOH A 92 692 10 HOH HOH . J 5 HOH A 93 693 53 HOH HOH . J 5 HOH A 94 694 19 HOH HOH . J 5 HOH A 95 695 37 HOH HOH . J 5 HOH A 96 696 44 HOH HOH . J 5 HOH A 97 697 63 HOH HOH . J 5 HOH A 98 698 3 HOH HOH . J 5 HOH A 99 699 72 HOH HOH . J 5 HOH A 100 700 48 HOH HOH . J 5 HOH A 101 701 149 HOH HOH . J 5 HOH A 102 702 83 HOH HOH . J 5 HOH A 103 703 112 HOH HOH . J 5 HOH A 104 704 85 HOH HOH . J 5 HOH A 105 705 66 HOH HOH . J 5 HOH A 106 706 88 HOH HOH . J 5 HOH A 107 707 70 HOH HOH . J 5 HOH A 108 708 107 HOH HOH . J 5 HOH A 109 709 97 HOH HOH . J 5 HOH A 110 710 43 HOH HOH . J 5 HOH A 111 711 142 HOH HOH . J 5 HOH A 112 712 120 HOH HOH . J 5 HOH A 113 713 100 HOH HOH . J 5 HOH A 114 714 31 HOH HOH . J 5 HOH A 115 715 89 HOH HOH . J 5 HOH A 116 716 102 HOH HOH . J 5 HOH A 117 717 139 HOH HOH . J 5 HOH A 118 718 151 HOH HOH . J 5 HOH A 119 719 62 HOH HOH . J 5 HOH A 120 720 119 HOH HOH . J 5 HOH A 121 721 135 HOH HOH . J 5 HOH A 122 722 121 HOH HOH . J 5 HOH A 123 723 84 HOH HOH . J 5 HOH A 124 724 128 HOH HOH . J 5 HOH A 125 725 27 HOH HOH . J 5 HOH A 126 726 99 HOH HOH . J 5 HOH A 127 727 69 HOH HOH . J 5 HOH A 128 728 79 HOH HOH . J 5 HOH A 129 729 36 HOH HOH . J 5 HOH A 130 730 138 HOH HOH . J 5 HOH A 131 731 136 HOH HOH . J 5 HOH A 132 732 127 HOH HOH . J 5 HOH A 133 733 132 HOH HOH . J 5 HOH A 134 734 76 HOH HOH . J 5 HOH A 135 735 86 HOH HOH . J 5 HOH A 136 736 144 HOH HOH . J 5 HOH A 137 737 87 HOH HOH . J 5 HOH A 138 738 122 HOH HOH . J 5 HOH A 139 739 81 HOH HOH . J 5 HOH A 140 740 118 HOH HOH . J 5 HOH A 141 741 164 HOH HOH . J 5 HOH A 142 742 137 HOH HOH . J 5 HOH A 143 743 133 HOH HOH . J 5 HOH A 144 744 39 HOH HOH . J 5 HOH A 145 745 145 HOH HOH . J 5 HOH A 146 746 116 HOH HOH . J 5 HOH A 147 747 64 HOH HOH . J 5 HOH A 148 748 75 HOH HOH . J 5 HOH A 149 749 101 HOH HOH . J 5 HOH A 150 750 129 HOH HOH . J 5 HOH A 151 751 124 HOH HOH . J 5 HOH A 152 752 126 HOH HOH . J 5 HOH A 153 753 146 HOH HOH . J 5 HOH A 154 754 130 HOH HOH . J 5 HOH A 155 755 157 HOH HOH . J 5 HOH A 156 756 32 HOH HOH . J 5 HOH A 157 757 140 HOH HOH . J 5 HOH A 158 758 143 HOH HOH . J 5 HOH A 159 759 125 HOH HOH . J 5 HOH A 160 760 117 HOH HOH . J 5 HOH A 161 761 147 HOH HOH . J 5 HOH A 162 762 113 HOH HOH . J 5 HOH A 163 763 80 HOH HOH . J 5 HOH A 164 764 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 1.573 9.006 -2.841 1 30.88 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 0.877 8.988 -4.095 1 38.06 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 3.036 9.326 -3.094 1 30.2 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 3.65 9.859 -1.918 1 44.68 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 3.8 8.089 -3.522 1 31.24 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 5.206 8.357 -3.506 1 36.83 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #