data_5IBO # _model_server_result.job_id 7MGWG-u8Ups-NKe0SSSduA _model_server_result.datetime_utc '2024-10-19 10:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ibo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5IBO # _exptl.entry_id 5IBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.265 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DECANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IBO _cell.length_a 60.436 _cell.length_b 62.658 _cell.length_c 96.835 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H20 O2' _chem_comp.formula_weight 172.265 _chem_comp.id DKA _chem_comp.mon_nstd_flag . _chem_comp.name 'DECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DKA doub 83 n n C1 C2 DKA sing 84 n n C1 O2 DKA sing 85 n n C2 C3 DKA sing 86 n n C2 H21 DKA sing 87 n n C2 H22 DKA sing 88 n n C3 C4 DKA sing 89 n n C3 H31 DKA sing 90 n n C3 H32 DKA sing 91 n n C4 C5 DKA sing 92 n n C4 H41 DKA sing 93 n n C4 H42 DKA sing 94 n n C5 C6 DKA sing 95 n n C5 H51 DKA sing 96 n n C5 H52 DKA sing 97 n n C6 C7 DKA sing 98 n n C6 H61 DKA sing 99 n n C6 H62 DKA sing 100 n n C7 C8 DKA sing 101 n n C7 H71 DKA sing 102 n n C7 H72 DKA sing 103 n n C8 C9 DKA sing 104 n n C8 H81 DKA sing 105 n n C8 H82 DKA sing 106 n n C9 C10 DKA sing 107 n n C9 H91 DKA sing 108 n n C9 H92 DKA sing 109 n n C10 H101 DKA sing 110 n n C10 H102 DKA sing 111 n n C10 H103 DKA sing 112 n n O2 HO2 DKA sing 113 n n # _atom_sites.entry_id 5IBO _atom_sites.fract_transf_matrix[1][1] 0.016546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DKA A 1 201 201 DKA DKA . D 2 DKA B 1 201 201 DKA DKA . E 3 HOH A 1 301 301 HOH HOH . E 3 HOH A 2 302 302 HOH HOH . E 3 HOH A 3 303 303 HOH HOH . E 3 HOH A 4 304 304 HOH HOH . E 3 HOH A 5 305 305 HOH HOH . E 3 HOH A 6 306 308 HOH HOH . E 3 HOH A 7 307 307 HOH HOH . E 3 HOH A 8 308 309 HOH HOH . E 3 HOH A 9 309 315 HOH HOH . E 3 HOH A 10 310 318 HOH HOH . E 3 HOH A 11 311 312 HOH HOH . E 3 HOH A 12 312 319 HOH HOH . E 3 HOH A 13 313 306 HOH HOH . E 3 HOH A 14 314 313 HOH HOH . E 3 HOH A 15 315 320 HOH HOH . E 3 HOH A 16 316 328 HOH HOH . E 3 HOH A 17 317 333 HOH HOH . E 3 HOH A 18 318 314 HOH HOH . E 3 HOH A 19 319 311 HOH HOH . E 3 HOH A 20 320 316 HOH HOH . E 3 HOH A 21 321 325 HOH HOH . E 3 HOH A 22 322 317 HOH HOH . E 3 HOH A 23 323 321 HOH HOH . E 3 HOH A 24 324 323 HOH HOH . E 3 HOH A 25 325 324 HOH HOH . E 3 HOH A 26 326 326 HOH HOH . E 3 HOH A 27 327 310 HOH HOH . E 3 HOH A 28 328 331 HOH HOH . E 3 HOH A 29 329 334 HOH HOH . E 3 HOH A 30 330 327 HOH HOH . E 3 HOH A 31 331 322 HOH HOH . E 3 HOH A 32 332 330 HOH HOH . E 3 HOH A 33 333 329 HOH HOH . E 3 HOH A 34 334 332 HOH HOH . E 3 HOH A 35 335 335 HOH HOH . E 3 HOH A 36 336 339 HOH HOH . E 3 HOH A 37 337 336 HOH HOH . E 3 HOH A 38 338 338 HOH HOH . E 3 HOH A 39 339 337 HOH HOH . E 3 HOH A 40 340 341 HOH HOH . E 3 HOH A 41 341 343 HOH HOH . E 3 HOH A 42 342 340 HOH HOH . E 3 HOH A 43 343 342 HOH HOH . E 3 HOH A 44 344 344 HOH HOH . E 3 HOH A 45 345 345 HOH HOH . E 3 HOH A 46 346 346 HOH HOH . E 3 HOH A 47 347 347 HOH HOH . E 3 HOH A 48 348 348 HOH HOH . E 3 HOH A 49 349 349 HOH HOH . E 3 HOH A 50 350 351 HOH HOH . E 3 HOH A 51 351 350 HOH HOH . E 3 HOH A 52 352 352 HOH HOH . E 3 HOH A 53 353 353 HOH HOH . E 3 HOH A 54 354 354 HOH HOH . F 3 HOH B 1 301 301 HOH HOH . F 3 HOH B 2 302 302 HOH HOH . F 3 HOH B 3 303 303 HOH HOH . F 3 HOH B 4 304 304 HOH HOH . F 3 HOH B 5 305 305 HOH HOH . F 3 HOH B 6 306 306 HOH HOH . F 3 HOH B 7 307 310 HOH HOH . F 3 HOH B 8 308 307 HOH HOH . F 3 HOH B 9 309 308 HOH HOH . F 3 HOH B 10 310 309 HOH HOH . F 3 HOH B 11 311 312 HOH HOH . F 3 HOH B 12 312 313 HOH HOH . F 3 HOH B 13 313 311 HOH HOH . F 3 HOH B 14 314 315 HOH HOH . F 3 HOH B 15 315 314 HOH HOH . F 3 HOH B 16 316 316 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DKA . . . C 2 53.325 29.698 12.817 1 45.03 ? C1 DKA 201 A 1 HETATM 2 O O1 DKA . . . C 2 53.309 30.31 11.71 1 29.44 ? O1 DKA 201 A 1 HETATM 3 C C2 DKA . . . C 2 52.328 28.581 13.148 1 43.18 ? C2 DKA 201 A 1 HETATM 4 C C3 DKA . . . C 2 51.018 28.807 12.448 1 17.41 ? C3 DKA 201 A 1 HETATM 5 C C4 DKA . . . C 2 50.486 27.623 11.586 1 20.39 ? C4 DKA 201 A 1 HETATM 6 C C5 DKA . . . C 2 50.468 28.071 10.121 1 21.13 ? C5 DKA 201 A 1 HETATM 7 C C6 DKA . . . C 2 49.248 27.843 9.298 1 28.35 ? C6 DKA 201 A 1 HETATM 8 C C7 DKA . . . C 2 49.021 29.057 8.418 1 37.38 ? C7 DKA 201 A 1 HETATM 9 C C8 DKA . . . C 2 50.033 29.139 7.29 1 28.63 ? C8 DKA 201 A 1 HETATM 10 C C9 DKA . . . C 2 50.582 30.552 7.111 1 31.62 ? C9 DKA 201 A 1 HETATM 11 C C10 DKA . . . C 2 50.217 31.178 5.763 1 47.03 ? C10 DKA 201 A 1 HETATM 12 O O2 DKA . . . C 2 54.213 29.973 13.654 1 31.97 ? O2 DKA 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 12 #