data_5IBT
#
_model_server_result.job_id            nhBVd_I7NZXH5y1j2tX6ZQ 
_model_server_result.datetime_utc      '2024-11-23 13:02:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ibt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5IBT 
#
_exptl.entry_id    5IBT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IBT 
_cell.length_a            51.84 
_cell.length_b            63.39 
_cell.length_c            146.42 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IBT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 152 H CYS 152 1_555 A SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5IBT 
_atom_sites.fract_transf_matrix[1][1]    0.01929 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00683 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL H 1 301 3 GOL GOL . 
D 3 GOL H 1 302 4 GOL GOL . 
E 4 HOH H 1 401 9 HOH HOH . 
E 4 HOH H 2 402 69 HOH HOH . 
E 4 HOH H 3 403 63 HOH HOH . 
E 4 HOH H 4 404 77 HOH HOH . 
E 4 HOH H 5 405 66 HOH HOH . 
E 4 HOH H 6 406 6 HOH HOH . 
E 4 HOH H 7 407 18 HOH HOH . 
E 4 HOH H 8 408 74 HOH HOH . 
E 4 HOH H 9 409 80 HOH HOH . 
E 4 HOH H 10 410 3 HOH HOH . 
E 4 HOH H 11 411 12 HOH HOH . 
E 4 HOH H 12 412 15 HOH HOH . 
E 4 HOH H 13 413 71 HOH HOH . 
E 4 HOH H 14 414 33 HOH HOH . 
E 4 HOH H 15 415 75 HOH HOH . 
E 4 HOH H 16 416 70 HOH HOH . 
E 4 HOH H 17 417 41 HOH HOH . 
E 4 HOH H 18 418 68 HOH HOH . 
E 4 HOH H 19 419 82 HOH HOH . 
E 4 HOH H 20 420 83 HOH HOH . 
E 4 HOH H 21 421 19 HOH HOH . 
E 4 HOH H 22 422 7 HOH HOH . 
E 4 HOH H 23 423 20 HOH HOH . 
E 4 HOH H 24 424 8 HOH HOH . 
E 4 HOH H 25 425 16 HOH HOH . 
E 4 HOH H 26 426 17 HOH HOH . 
E 4 HOH H 27 427 65 HOH HOH . 
E 4 HOH H 28 428 49 HOH HOH . 
E 4 HOH H 29 429 45 HOH HOH . 
E 4 HOH H 30 430 47 HOH HOH . 
E 4 HOH H 31 431 5 HOH HOH . 
E 4 HOH H 32 432 14 HOH HOH . 
E 4 HOH H 33 433 56 HOH HOH . 
E 4 HOH H 34 434 89 HOH HOH . 
E 4 HOH H 35 435 25 HOH HOH . 
E 4 HOH H 36 436 34 HOH HOH . 
E 4 HOH H 37 437 88 HOH HOH . 
E 4 HOH H 38 438 1 HOH HOH . 
E 4 HOH H 39 439 42 HOH HOH . 
E 4 HOH H 40 440 37 HOH HOH . 
E 4 HOH H 41 441 38 HOH HOH . 
E 4 HOH H 42 442 60 HOH HOH . 
E 4 HOH H 43 443 57 HOH HOH . 
E 4 HOH H 44 444 53 HOH HOH . 
E 4 HOH H 45 445 87 HOH HOH . 
E 4 HOH H 46 446 35 HOH HOH . 
E 4 HOH H 47 447 76 HOH HOH . 
E 4 HOH H 48 448 81 HOH HOH . 
E 4 HOH H 49 449 4 HOH HOH . 
E 4 HOH H 50 450 40 HOH HOH . 
E 4 HOH H 51 451 59 HOH HOH . 
E 4 HOH H 52 452 85 HOH HOH . 
E 4 HOH H 53 453 84 HOH HOH . 
F 4 HOH L 1 301 64 HOH HOH . 
F 4 HOH L 2 302 67 HOH HOH . 
F 4 HOH L 3 303 79 HOH HOH . 
F 4 HOH L 4 304 13 HOH HOH . 
F 4 HOH L 5 305 11 HOH HOH . 
F 4 HOH L 6 306 32 HOH HOH . 
F 4 HOH L 7 307 46 HOH HOH . 
F 4 HOH L 8 308 31 HOH HOH . 
F 4 HOH L 9 309 26 HOH HOH . 
F 4 HOH L 10 310 73 HOH HOH . 
F 4 HOH L 11 311 50 HOH HOH . 
F 4 HOH L 12 312 10 HOH HOH . 
F 4 HOH L 13 313 39 HOH HOH . 
F 4 HOH L 14 314 29 HOH HOH . 
F 4 HOH L 15 315 48 HOH HOH . 
F 4 HOH L 16 316 36 HOH HOH . 
F 4 HOH L 17 317 21 HOH HOH . 
F 4 HOH L 18 318 51 HOH HOH . 
F 4 HOH L 19 319 61 HOH HOH . 
F 4 HOH L 20 320 55 HOH HOH . 
F 4 HOH L 21 321 22 HOH HOH . 
F 4 HOH L 22 322 24 HOH HOH . 
F 4 HOH L 23 323 27 HOH HOH . 
F 4 HOH L 24 324 30 HOH HOH . 
F 4 HOH L 25 325 28 HOH HOH . 
F 4 HOH L 26 326 2 HOH HOH . 
F 4 HOH L 27 327 43 HOH HOH . 
F 4 HOH L 28 328 78 HOH HOH . 
F 4 HOH L 29 329 86 HOH HOH . 
F 4 HOH L 30 330 44 HOH HOH . 
F 4 HOH L 31 331 54 HOH HOH . 
F 4 HOH L 32 332 62 HOH HOH . 
F 4 HOH L 33 333 58 HOH HOH . 
F 4 HOH L 34 334 23 HOH HOH . 
F 4 HOH L 35 335 52 HOH HOH . 
F 4 HOH L 36 336 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -15.07 -24 49.647 1 72.84 ? C1 GOL 301 H 1 
HETATM 2 O O1 GOL . . . C 3 -15.309 -22.637 49.31 1 72.69 ? O1 GOL 301 H 1 
HETATM 3 C C2 GOL . . . C 3 -13.689 -24.423 49.207 1 71.31 ? C2 GOL 301 H 1 
HETATM 4 O O2 GOL . . . C 3 -13.206 -25.464 50.074 1 71.37 ? O2 GOL 301 H 1 
HETATM 5 C C3 GOL . . . C 3 -13.73 -24.9 47.772 1 70.48 ? C3 GOL 301 H 1 
HETATM 6 O O3 GOL . . . C 3 -12.533 -24.572 47.064 1 69.25 ? O3 GOL 301 H 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#