data_5IC0
#
_model_server_result.job_id            '_BLwAxezXGV6b48Hs7m6-w' 
_model_server_result.datetime_utc      '2024-12-23 10:03:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ic0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1904}' 
#
_entry.id    5IC0 
#
_exptl.entry_id    5IC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.82 
_cell.angle_gamma         90 
_cell.entry_id            5IC0 
_cell.length_a            49.007 
_cell.length_b            77.573 
_cell.length_c            61.622 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5IC0 
_atom_sites.fract_transf_matrix[1][1]    0.020405 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007354 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012891 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01725 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 1901 1 EDO EDO . 
C 2 EDO A 1 1902 2 EDO EDO . 
D 2 EDO A 1 1903 3 EDO EDO . 
E 2 EDO A 1 1904 4 EDO EDO . 
F 3 HOH A 1 2001 213 HOH HOH . 
F 3 HOH A 2 2002 87 HOH HOH . 
F 3 HOH A 3 2003 223 HOH HOH . 
F 3 HOH A 4 2004 32 HOH HOH . 
F 3 HOH A 5 2005 9 HOH HOH . 
F 3 HOH A 6 2006 122 HOH HOH . 
F 3 HOH A 7 2007 155 HOH HOH . 
F 3 HOH A 8 2008 6 HOH HOH . 
F 3 HOH A 9 2009 117 HOH HOH . 
F 3 HOH A 10 2010 217 HOH HOH . 
F 3 HOH A 11 2011 30 HOH HOH . 
F 3 HOH A 12 2012 35 HOH HOH . 
F 3 HOH A 13 2013 139 HOH HOH . 
F 3 HOH A 14 2014 112 HOH HOH . 
F 3 HOH A 15 2015 204 HOH HOH . 
F 3 HOH A 16 2016 84 HOH HOH . 
F 3 HOH A 17 2017 33 HOH HOH . 
F 3 HOH A 18 2018 151 HOH HOH . 
F 3 HOH A 19 2019 39 HOH HOH . 
F 3 HOH A 20 2020 114 HOH HOH . 
F 3 HOH A 21 2021 79 HOH HOH . 
F 3 HOH A 22 2022 86 HOH HOH . 
F 3 HOH A 23 2023 61 HOH HOH . 
F 3 HOH A 24 2024 15 HOH HOH . 
F 3 HOH A 25 2025 103 HOH HOH . 
F 3 HOH A 26 2026 49 HOH HOH . 
F 3 HOH A 27 2027 40 HOH HOH . 
F 3 HOH A 28 2028 140 HOH HOH . 
F 3 HOH A 29 2029 160 HOH HOH . 
F 3 HOH A 30 2030 52 HOH HOH . 
F 3 HOH A 31 2031 58 HOH HOH . 
F 3 HOH A 32 2032 215 HOH HOH . 
F 3 HOH A 33 2033 22 HOH HOH . 
F 3 HOH A 34 2034 176 HOH HOH . 
F 3 HOH A 35 2035 108 HOH HOH . 
F 3 HOH A 36 2036 36 HOH HOH . 
F 3 HOH A 37 2037 17 HOH HOH . 
F 3 HOH A 38 2038 187 HOH HOH . 
F 3 HOH A 39 2039 18 HOH HOH . 
F 3 HOH A 40 2040 34 HOH HOH . 
F 3 HOH A 41 2041 14 HOH HOH . 
F 3 HOH A 42 2042 81 HOH HOH . 
F 3 HOH A 43 2043 169 HOH HOH . 
F 3 HOH A 44 2044 148 HOH HOH . 
F 3 HOH A 45 2045 119 HOH HOH . 
F 3 HOH A 46 2046 97 HOH HOH . 
F 3 HOH A 47 2047 161 HOH HOH . 
F 3 HOH A 48 2048 25 HOH HOH . 
F 3 HOH A 49 2049 144 HOH HOH . 
F 3 HOH A 50 2050 28 HOH HOH . 
F 3 HOH A 51 2051 202 HOH HOH . 
F 3 HOH A 52 2052 92 HOH HOH . 
F 3 HOH A 53 2053 82 HOH HOH . 
F 3 HOH A 54 2054 156 HOH HOH . 
F 3 HOH A 55 2055 19 HOH HOH . 
F 3 HOH A 56 2056 107 HOH HOH . 
F 3 HOH A 57 2057 164 HOH HOH . 
F 3 HOH A 58 2058 218 HOH HOH . 
F 3 HOH A 59 2059 53 HOH HOH . 
F 3 HOH A 60 2060 37 HOH HOH . 
F 3 HOH A 61 2061 62 HOH HOH . 
F 3 HOH A 62 2062 75 HOH HOH . 
F 3 HOH A 63 2063 124 HOH HOH . 
F 3 HOH A 64 2064 190 HOH HOH . 
F 3 HOH A 65 2065 106 HOH HOH . 
F 3 HOH A 66 2066 11 HOH HOH . 
F 3 HOH A 67 2067 196 HOH HOH . 
F 3 HOH A 68 2068 31 HOH HOH . 
F 3 HOH A 69 2069 96 HOH HOH . 
F 3 HOH A 70 2070 113 HOH HOH . 
F 3 HOH A 71 2071 178 HOH HOH . 
F 3 HOH A 72 2072 146 HOH HOH . 
F 3 HOH A 73 2073 63 HOH HOH . 
F 3 HOH A 74 2074 142 HOH HOH . 
F 3 HOH A 75 2075 115 HOH HOH . 
F 3 HOH A 76 2076 83 HOH HOH . 
F 3 HOH A 77 2077 12 HOH HOH . 
F 3 HOH A 78 2078 180 HOH HOH . 
F 3 HOH A 79 2079 54 HOH HOH . 
F 3 HOH A 80 2080 27 HOH HOH . 
F 3 HOH A 81 2081 20 HOH HOH . 
F 3 HOH A 82 2082 109 HOH HOH . 
F 3 HOH A 83 2083 44 HOH HOH . 
F 3 HOH A 84 2084 168 HOH HOH . 
F 3 HOH A 85 2085 186 HOH HOH . 
F 3 HOH A 86 2086 133 HOH HOH . 
F 3 HOH A 87 2087 185 HOH HOH . 
F 3 HOH A 88 2088 69 HOH HOH . 
F 3 HOH A 89 2089 29 HOH HOH . 
F 3 HOH A 90 2090 66 HOH HOH . 
F 3 HOH A 91 2091 211 HOH HOH . 
F 3 HOH A 92 2092 41 HOH HOH . 
F 3 HOH A 93 2093 60 HOH HOH . 
F 3 HOH A 94 2094 170 HOH HOH . 
F 3 HOH A 95 2095 181 HOH HOH . 
F 3 HOH A 96 2096 77 HOH HOH . 
F 3 HOH A 97 2097 141 HOH HOH . 
F 3 HOH A 98 2098 91 HOH HOH . 
F 3 HOH A 99 2099 8 HOH HOH . 
F 3 HOH A 100 2100 162 HOH HOH . 
F 3 HOH A 101 2101 2 HOH HOH . 
F 3 HOH A 102 2102 105 HOH HOH . 
F 3 HOH A 103 2103 163 HOH HOH . 
F 3 HOH A 104 2104 101 HOH HOH . 
F 3 HOH A 105 2105 80 HOH HOH . 
F 3 HOH A 106 2106 171 HOH HOH . 
F 3 HOH A 107 2107 216 HOH HOH . 
F 3 HOH A 108 2108 136 HOH HOH . 
F 3 HOH A 109 2109 65 HOH HOH . 
F 3 HOH A 110 2110 183 HOH HOH . 
F 3 HOH A 111 2111 89 HOH HOH . 
F 3 HOH A 112 2112 88 HOH HOH . 
F 3 HOH A 113 2113 166 HOH HOH . 
F 3 HOH A 114 2114 47 HOH HOH . 
F 3 HOH A 115 2115 167 HOH HOH . 
F 3 HOH A 116 2116 158 HOH HOH . 
F 3 HOH A 117 2117 98 HOH HOH . 
F 3 HOH A 118 2118 4 HOH HOH . 
F 3 HOH A 119 2119 50 HOH HOH . 
F 3 HOH A 120 2120 10 HOH HOH . 
F 3 HOH A 121 2121 121 HOH HOH . 
F 3 HOH A 122 2122 5 HOH HOH . 
F 3 HOH A 123 2123 68 HOH HOH . 
F 3 HOH A 124 2124 157 HOH HOH . 
F 3 HOH A 125 2125 24 HOH HOH . 
F 3 HOH A 126 2126 205 HOH HOH . 
F 3 HOH A 127 2127 153 HOH HOH . 
F 3 HOH A 128 2128 116 HOH HOH . 
F 3 HOH A 129 2129 56 HOH HOH . 
F 3 HOH A 130 2130 120 HOH HOH . 
F 3 HOH A 131 2131 208 HOH HOH . 
F 3 HOH A 132 2132 94 HOH HOH . 
F 3 HOH A 133 2133 21 HOH HOH . 
F 3 HOH A 134 2134 224 HOH HOH . 
F 3 HOH A 135 2135 174 HOH HOH . 
F 3 HOH A 136 2136 78 HOH HOH . 
F 3 HOH A 137 2137 100 HOH HOH . 
F 3 HOH A 138 2138 16 HOH HOH . 
F 3 HOH A 139 2139 203 HOH HOH . 
F 3 HOH A 140 2140 220 HOH HOH . 
F 3 HOH A 141 2141 55 HOH HOH . 
F 3 HOH A 142 2142 76 HOH HOH . 
F 3 HOH A 143 2143 26 HOH HOH . 
F 3 HOH A 144 2144 152 HOH HOH . 
F 3 HOH A 145 2145 3 HOH HOH . 
F 3 HOH A 146 2146 145 HOH HOH . 
F 3 HOH A 147 2147 46 HOH HOH . 
F 3 HOH A 148 2148 126 HOH HOH . 
F 3 HOH A 149 2149 85 HOH HOH . 
F 3 HOH A 150 2150 57 HOH HOH . 
F 3 HOH A 151 2151 194 HOH HOH . 
F 3 HOH A 152 2152 199 HOH HOH . 
F 3 HOH A 153 2153 219 HOH HOH . 
F 3 HOH A 154 2154 72 HOH HOH . 
F 3 HOH A 155 2155 71 HOH HOH . 
F 3 HOH A 156 2156 125 HOH HOH . 
F 3 HOH A 157 2157 172 HOH HOH . 
F 3 HOH A 158 2158 195 HOH HOH . 
F 3 HOH A 159 2159 45 HOH HOH . 
F 3 HOH A 160 2160 206 HOH HOH . 
F 3 HOH A 161 2161 128 HOH HOH . 
F 3 HOH A 162 2162 48 HOH HOH . 
F 3 HOH A 163 2163 99 HOH HOH . 
F 3 HOH A 164 2164 1 HOH HOH . 
F 3 HOH A 165 2165 165 HOH HOH . 
F 3 HOH A 166 2166 143 HOH HOH . 
F 3 HOH A 167 2167 209 HOH HOH . 
F 3 HOH A 168 2168 111 HOH HOH . 
F 3 HOH A 169 2169 210 HOH HOH . 
F 3 HOH A 170 2170 74 HOH HOH . 
F 3 HOH A 171 2171 13 HOH HOH . 
F 3 HOH A 172 2172 95 HOH HOH . 
F 3 HOH A 173 2173 43 HOH HOH . 
F 3 HOH A 174 2174 200 HOH HOH . 
F 3 HOH A 175 2175 193 HOH HOH . 
F 3 HOH A 176 2176 23 HOH HOH . 
F 3 HOH A 177 2177 138 HOH HOH . 
F 3 HOH A 178 2178 188 HOH HOH . 
F 3 HOH A 179 2179 182 HOH HOH . 
F 3 HOH A 180 2180 154 HOH HOH . 
F 3 HOH A 181 2181 179 HOH HOH . 
F 3 HOH A 182 2182 201 HOH HOH . 
F 3 HOH A 183 2183 73 HOH HOH . 
F 3 HOH A 184 2184 135 HOH HOH . 
F 3 HOH A 185 2185 129 HOH HOH . 
F 3 HOH A 186 2186 147 HOH HOH . 
F 3 HOH A 187 2187 130 HOH HOH . 
F 3 HOH A 188 2188 222 HOH HOH . 
F 3 HOH A 189 2189 189 HOH HOH . 
F 3 HOH A 190 2190 67 HOH HOH . 
F 3 HOH A 191 2191 177 HOH HOH . 
F 3 HOH A 192 2192 93 HOH HOH . 
F 3 HOH A 193 2193 197 HOH HOH . 
F 3 HOH A 194 2194 42 HOH HOH . 
F 3 HOH A 195 2195 150 HOH HOH . 
F 3 HOH A 196 2196 59 HOH HOH . 
F 3 HOH A 197 2197 102 HOH HOH . 
F 3 HOH A 198 2198 159 HOH HOH . 
F 3 HOH A 199 2199 7 HOH HOH . 
F 3 HOH A 200 2200 137 HOH HOH . 
F 3 HOH A 201 2201 51 HOH HOH . 
F 3 HOH A 202 2202 221 HOH HOH . 
F 3 HOH A 203 2203 149 HOH HOH . 
F 3 HOH A 204 2204 134 HOH HOH . 
F 3 HOH A 205 2205 198 HOH HOH . 
F 3 HOH A 206 2206 70 HOH HOH . 
F 3 HOH A 207 2207 118 HOH HOH . 
F 3 HOH A 208 2208 207 HOH HOH . 
F 3 HOH A 209 2209 104 HOH HOH . 
F 3 HOH A 210 2210 64 HOH HOH . 
F 3 HOH A 211 2211 110 HOH HOH . 
F 3 HOH A 212 2212 173 HOH HOH . 
F 3 HOH A 213 2213 192 HOH HOH . 
F 3 HOH A 214 2214 175 HOH HOH . 
F 3 HOH A 215 2215 127 HOH HOH . 
F 3 HOH A 216 2216 191 HOH HOH . 
F 3 HOH A 217 2217 184 HOH HOH . 
F 3 HOH A 218 2218 131 HOH HOH . 
F 3 HOH A 219 2219 90 HOH HOH . 
F 3 HOH A 220 2220 212 HOH HOH . 
F 3 HOH A 221 2221 132 HOH HOH . 
F 3 HOH A 222 2222 38 HOH HOH . 
F 3 HOH A 223 2223 123 HOH HOH . 
F 3 HOH A 224 2224 214 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 2 31.9 -6.088 70.012 1 22.96 ? C1 EDO 1904 A 1 
HETATM 2 O O1 EDO . . . E 2 33.026 -5.399 70.57 1 23.76 ? O1 EDO 1904 A 1 
HETATM 3 C C2 EDO . . . E 2 32.347 -7.293 69.194 1 22.03 ? C2 EDO 1904 A 1 
HETATM 4 O O2 EDO . . . E 2 33.75 -7.175 68.936 1 23.14 ? O2 EDO 1904 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#