data_5ICD # _model_server_result.job_id JcYiUkiBFY1YAMl62D89lg _model_server_result.datetime_utc '2024-10-16 10:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5icd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":417}' # _entry.id 5ICD # _exptl.entry_id 5ICD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ICD _cell.length_a 105.1 _cell.length_b 105.1 _cell.length_c 150.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ICD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 283 A ASP 283 7_555 B MG MG . A MG 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A OD2 ASP 307 A ASP 307 1_555 B MG MG . A MG 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 B MG MG . A MG 417 1_555 C O7 ICT . A ICT 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc4 B MG MG . A MG 417 1_555 C O2 ICT . A ICT 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc5 B MG MG . A MG 417 1_555 D O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 B MG MG . A MG 417 1_555 D O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ICD _atom_sites.fract_transf_matrix[1][1] 0.009515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 417 2 MG MG . C 3 ICT A 1 418 1 ICT ICT . D 4 HOH A 1 419 3 HOH HOH . D 4 HOH A 2 420 4 HOH HOH . D 4 HOH A 3 421 5 HOH HOH . D 4 HOH A 4 422 6 HOH HOH . D 4 HOH A 5 423 7 HOH HOH . D 4 HOH A 6 424 8 HOH HOH . D 4 HOH A 7 425 9 HOH HOH . D 4 HOH A 8 426 10 HOH HOH . D 4 HOH A 9 427 11 HOH HOH . D 4 HOH A 10 428 12 HOH HOH . D 4 HOH A 11 429 13 HOH HOH . D 4 HOH A 12 430 14 HOH HOH . D 4 HOH A 13 431 15 HOH HOH . D 4 HOH A 14 432 16 HOH HOH . D 4 HOH A 15 433 17 HOH HOH . D 4 HOH A 16 434 18 HOH HOH . D 4 HOH A 17 435 19 HOH HOH . D 4 HOH A 18 436 20 HOH HOH . D 4 HOH A 19 437 21 HOH HOH . D 4 HOH A 20 438 22 HOH HOH . D 4 HOH A 21 439 23 HOH HOH . D 4 HOH A 22 440 24 HOH HOH . D 4 HOH A 23 441 25 HOH HOH . D 4 HOH A 24 442 26 HOH HOH . D 4 HOH A 25 443 27 HOH HOH . D 4 HOH A 26 444 28 HOH HOH . D 4 HOH A 27 445 29 HOH HOH . D 4 HOH A 28 446 30 HOH HOH . D 4 HOH A 29 447 31 HOH HOH . D 4 HOH A 30 448 32 HOH HOH . D 4 HOH A 31 449 33 HOH HOH . D 4 HOH A 32 450 34 HOH HOH . D 4 HOH A 33 451 35 HOH HOH . D 4 HOH A 34 452 36 HOH HOH . D 4 HOH A 35 453 37 HOH HOH . D 4 HOH A 36 454 38 HOH HOH . D 4 HOH A 37 455 39 HOH HOH . D 4 HOH A 38 456 40 HOH HOH . D 4 HOH A 39 457 41 HOH HOH . D 4 HOH A 40 458 42 HOH HOH . D 4 HOH A 41 459 43 HOH HOH . D 4 HOH A 42 460 44 HOH HOH . D 4 HOH A 43 461 45 HOH HOH . D 4 HOH A 44 462 46 HOH HOH . D 4 HOH A 45 463 47 HOH HOH . D 4 HOH A 46 464 48 HOH HOH . D 4 HOH A 47 465 49 HOH HOH . D 4 HOH A 48 466 50 HOH HOH . D 4 HOH A 49 467 51 HOH HOH . D 4 HOH A 50 468 52 HOH HOH . D 4 HOH A 51 469 53 HOH HOH . D 4 HOH A 52 470 54 HOH HOH . D 4 HOH A 53 471 55 HOH HOH . D 4 HOH A 54 472 56 HOH HOH . D 4 HOH A 55 473 57 HOH HOH . D 4 HOH A 56 474 58 HOH HOH . D 4 HOH A 57 475 59 HOH HOH . D 4 HOH A 58 476 60 HOH HOH . D 4 HOH A 59 477 61 HOH HOH . D 4 HOH A 60 478 62 HOH HOH . D 4 HOH A 61 479 63 HOH HOH . D 4 HOH A 62 480 64 HOH HOH . D 4 HOH A 63 481 65 HOH HOH . D 4 HOH A 64 482 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 84.722 _atom_site.Cartn_y 69.828 _atom_site.Cartn_z 2.029 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 417 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #