data_5ICD
#
_model_server_result.job_id            2vO_hindQVMrw9UiG1Z1IA 
_model_server_result.datetime_utc      '2024-10-16 10:40:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5icd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":418}' 
#
_entry.id    5ICD 
#
_exptl.entry_id    5ICD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ISOCITRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ICD 
_cell.length_a            105.1 
_cell.length_b            105.1 
_cell.length_c            150.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ICD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 283 A ASP 283 7_555 B MG MG . A MG 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc2 A OD2 ASP 307 A ASP 307 1_555 B MG MG . A MG 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc3 B MG MG . A MG 417 1_555 C O7 ICT . A ICT 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc4 B MG MG . A MG 417 1_555 C O2 ICT . A ICT 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc5 B MG MG . A MG 417 1_555 D O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc6 B MG MG . A MG 417 1_555 D O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                ICT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ISOCITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 ICT doub 152 n n 
C1 O2 ICT sing 153 n n 
C1 C2 ICT sing 154 n n 
O2 HO2 ICT sing 155 n n 
C2 O7 ICT sing 156 n n 
C2 C3 ICT sing 157 n n 
C2 H2 ICT sing 158 n n 
O7 HO7 ICT sing 159 n n 
C3 C4 ICT sing 160 n n 
C3 C6 ICT sing 161 n n 
C3 H3 ICT sing 162 n n 
C4 C5 ICT sing 163 n n 
C4 H41 ICT sing 164 n n 
C4 H42 ICT sing 165 n n 
C5 O3 ICT doub 166 n n 
C5 O4 ICT sing 167 n n 
O4 HO4 ICT sing 168 n n 
C6 O5 ICT doub 169 n n 
C6 O6 ICT sing 170 n n 
O6 HO6 ICT sing 171 n n 
#
_atom_sites.entry_id                     5ICD 
_atom_sites.fract_transf_matrix[1][1]    0.009515 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006653 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 417 2 MG MG . 
C 3 ICT A 1 418 1 ICT ICT . 
D 4 HOH A 1 419 3 HOH HOH . 
D 4 HOH A 2 420 4 HOH HOH . 
D 4 HOH A 3 421 5 HOH HOH . 
D 4 HOH A 4 422 6 HOH HOH . 
D 4 HOH A 5 423 7 HOH HOH . 
D 4 HOH A 6 424 8 HOH HOH . 
D 4 HOH A 7 425 9 HOH HOH . 
D 4 HOH A 8 426 10 HOH HOH . 
D 4 HOH A 9 427 11 HOH HOH . 
D 4 HOH A 10 428 12 HOH HOH . 
D 4 HOH A 11 429 13 HOH HOH . 
D 4 HOH A 12 430 14 HOH HOH . 
D 4 HOH A 13 431 15 HOH HOH . 
D 4 HOH A 14 432 16 HOH HOH . 
D 4 HOH A 15 433 17 HOH HOH . 
D 4 HOH A 16 434 18 HOH HOH . 
D 4 HOH A 17 435 19 HOH HOH . 
D 4 HOH A 18 436 20 HOH HOH . 
D 4 HOH A 19 437 21 HOH HOH . 
D 4 HOH A 20 438 22 HOH HOH . 
D 4 HOH A 21 439 23 HOH HOH . 
D 4 HOH A 22 440 24 HOH HOH . 
D 4 HOH A 23 441 25 HOH HOH . 
D 4 HOH A 24 442 26 HOH HOH . 
D 4 HOH A 25 443 27 HOH HOH . 
D 4 HOH A 26 444 28 HOH HOH . 
D 4 HOH A 27 445 29 HOH HOH . 
D 4 HOH A 28 446 30 HOH HOH . 
D 4 HOH A 29 447 31 HOH HOH . 
D 4 HOH A 30 448 32 HOH HOH . 
D 4 HOH A 31 449 33 HOH HOH . 
D 4 HOH A 32 450 34 HOH HOH . 
D 4 HOH A 33 451 35 HOH HOH . 
D 4 HOH A 34 452 36 HOH HOH . 
D 4 HOH A 35 453 37 HOH HOH . 
D 4 HOH A 36 454 38 HOH HOH . 
D 4 HOH A 37 455 39 HOH HOH . 
D 4 HOH A 38 456 40 HOH HOH . 
D 4 HOH A 39 457 41 HOH HOH . 
D 4 HOH A 40 458 42 HOH HOH . 
D 4 HOH A 41 459 43 HOH HOH . 
D 4 HOH A 42 460 44 HOH HOH . 
D 4 HOH A 43 461 45 HOH HOH . 
D 4 HOH A 44 462 46 HOH HOH . 
D 4 HOH A 45 463 47 HOH HOH . 
D 4 HOH A 46 464 48 HOH HOH . 
D 4 HOH A 47 465 49 HOH HOH . 
D 4 HOH A 48 466 50 HOH HOH . 
D 4 HOH A 49 467 51 HOH HOH . 
D 4 HOH A 50 468 52 HOH HOH . 
D 4 HOH A 51 469 53 HOH HOH . 
D 4 HOH A 52 470 54 HOH HOH . 
D 4 HOH A 53 471 55 HOH HOH . 
D 4 HOH A 54 472 56 HOH HOH . 
D 4 HOH A 55 473 57 HOH HOH . 
D 4 HOH A 56 474 58 HOH HOH . 
D 4 HOH A 57 475 59 HOH HOH . 
D 4 HOH A 58 476 60 HOH HOH . 
D 4 HOH A 59 477 61 HOH HOH . 
D 4 HOH A 60 478 62 HOH HOH . 
D 4 HOH A 61 479 63 HOH HOH . 
D 4 HOH A 62 480 64 HOH HOH . 
D 4 HOH A 63 481 65 HOH HOH . 
D 4 HOH A 64 482 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ICT . . . C 3 85.528 67.43 3.166 1 36.02 ? C1 ICT 418 A 1 
HETATM 2 O O1 ICT . . . C 3 86.369 66.729 3.769 1 42.82 ? O1 ICT 418 A 1 
HETATM 3 O O2 ICT . . . C 3 84.861 68.328 3.682 1 36.42 ? O2 ICT 418 A 1 
HETATM 4 C C2 ICT . . . C 3 85.277 67.11 1.723 1 32.55 ? C2 ICT 418 A 1 
HETATM 5 O O7 ICT . . . C 3 84.673 68.207 1.012 1 28.09 ? O7 ICT 418 A 1 
HETATM 6 C C3 ICT . . . C 3 84.464 65.905 1.649 1 33.4 ? C3 ICT 418 A 1 
HETATM 7 C C4 ICT . . . C 3 84.572 65.451 0.228 1 32.48 ? C4 ICT 418 A 1 
HETATM 8 C C5 ICT . . . C 3 85.445 64.225 0.184 1 32.06 ? C5 ICT 418 A 1 
HETATM 9 O O3 ICT . . . C 3 86.533 64.273 -0.411 1 38.12 ? O3 ICT 418 A 1 
HETATM 10 O O4 ICT . . . C 3 85.109 63.214 0.769 1 31.61 ? O4 ICT 418 A 1 
HETATM 11 C C6 ICT . . . C 3 82.977 66.2 2.073 1 40.99 ? C6 ICT 418 A 1 
HETATM 12 O O5 ICT . . . C 3 82.697 66.153 3.283 1 42.31 ? O5 ICT 418 A 1 
HETATM 13 O O6 ICT . . . C 3 82.14 66.384 1.138 1 43.5 ? O6 ICT 418 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           13 
#