data_5ICF # _model_server_result.job_id X1xoe_JXsKM8fk8oCDSrBQ _model_server_result.datetime_utc '2024-11-27 18:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5icf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":413}' # _entry.id 5ICF # _exptl.entry_id 5ICF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ICF _cell.length_a 73.34 _cell.length_b 109.09 _cell.length_c 40.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ICF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 299 A THR 297 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc2 D K K . A K 403 1_555 V O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc3 D K K . A K 403 1_555 V O HOH . A HOH 605 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc4 F NA NA . A NA 405 1_555 V O HOH . A HOH 683 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 5ICF _atom_sites.fract_transf_matrix[1][1] 0.013635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 351 SAH SAH . C 3 SAU A 1 402 352 SAU SAU . D 4 K A 1 403 353 K K . E 4 K A 1 404 354 K K . F 5 NA A 1 405 355 NA NA . G 6 EDO A 1 406 356 EDO EDO . H 6 EDO A 1 407 357 EDO EDO . I 6 EDO A 1 408 358 EDO EDO . J 6 EDO A 1 409 359 EDO EDO . K 6 EDO A 1 410 360 EDO EDO . L 6 EDO A 1 411 361 EDO EDO . M 6 EDO A 1 412 362 EDO EDO . N 6 EDO A 1 413 363 EDO EDO . O 6 EDO A 1 414 364 EDO EDO . P 6 EDO A 1 415 365 EDO EDO . Q 6 EDO A 1 416 366 EDO EDO . R 6 EDO A 1 417 367 EDO EDO . S 6 EDO A 1 418 368 EDO EDO . T 7 DMS A 1 419 369 DMS DMS . U 7 DMS A 1 420 370 DMS DMS . V 8 HOH A 1 501 125 HOH HOH . V 8 HOH A 2 502 204 HOH HOH . V 8 HOH A 3 503 134 HOH HOH . V 8 HOH A 4 504 143 HOH HOH . V 8 HOH A 5 505 104 HOH HOH . V 8 HOH A 6 506 207 HOH HOH . V 8 HOH A 7 507 126 HOH HOH . V 8 HOH A 8 508 181 HOH HOH . V 8 HOH A 9 509 115 HOH HOH . V 8 HOH A 10 510 111 HOH HOH . V 8 HOH A 11 511 97 HOH HOH . V 8 HOH A 12 512 132 HOH HOH . V 8 HOH A 13 513 145 HOH HOH . V 8 HOH A 14 514 113 HOH HOH . V 8 HOH A 15 515 49 HOH HOH . V 8 HOH A 16 516 144 HOH HOH . V 8 HOH A 17 517 179 HOH HOH . V 8 HOH A 18 518 171 HOH HOH . V 8 HOH A 19 519 45 HOH HOH . V 8 HOH A 20 520 176 HOH HOH . V 8 HOH A 21 521 110 HOH HOH . V 8 HOH A 22 522 84 HOH HOH . V 8 HOH A 23 523 106 HOH HOH . V 8 HOH A 24 524 164 HOH HOH . V 8 HOH A 25 525 14 HOH HOH . V 8 HOH A 26 526 33 HOH HOH . V 8 HOH A 27 527 4 HOH HOH . V 8 HOH A 28 528 130 HOH HOH . V 8 HOH A 29 529 3 HOH HOH . V 8 HOH A 30 530 170 HOH HOH . V 8 HOH A 31 531 16 HOH HOH . V 8 HOH A 32 532 82 HOH HOH . V 8 HOH A 33 533 198 HOH HOH . V 8 HOH A 34 534 92 HOH HOH . V 8 HOH A 35 535 23 HOH HOH . V 8 HOH A 36 536 222 HOH HOH . V 8 HOH A 37 537 128 HOH HOH . V 8 HOH A 38 538 41 HOH HOH . V 8 HOH A 39 539 52 HOH HOH . V 8 HOH A 40 540 26 HOH HOH . V 8 HOH A 41 541 12 HOH HOH . V 8 HOH A 42 542 27 HOH HOH . V 8 HOH A 43 543 163 HOH HOH . V 8 HOH A 44 544 67 HOH HOH . V 8 HOH A 45 545 184 HOH HOH . V 8 HOH A 46 546 15 HOH HOH . V 8 HOH A 47 547 173 HOH HOH . V 8 HOH A 48 548 61 HOH HOH . V 8 HOH A 49 549 135 HOH HOH . V 8 HOH A 50 550 66 HOH HOH . V 8 HOH A 51 551 36 HOH HOH . V 8 HOH A 52 552 54 HOH HOH . V 8 HOH A 53 553 65 HOH HOH . V 8 HOH A 54 554 80 HOH HOH . V 8 HOH A 55 555 98 HOH HOH . V 8 HOH A 56 556 199 HOH HOH . V 8 HOH A 57 557 74 HOH HOH . V 8 HOH A 58 558 138 HOH HOH . V 8 HOH A 59 559 64 HOH HOH . V 8 HOH A 60 560 76 HOH HOH . V 8 HOH A 61 561 8 HOH HOH . V 8 HOH A 62 562 87 HOH HOH . V 8 HOH A 63 563 205 HOH HOH . V 8 HOH A 64 564 70 HOH HOH . V 8 HOH A 65 565 219 HOH HOH . V 8 HOH A 66 566 94 HOH HOH . V 8 HOH A 67 567 201 HOH HOH . V 8 HOH A 68 568 48 HOH HOH . V 8 HOH A 69 569 107 HOH HOH . V 8 HOH A 70 570 147 HOH HOH . V 8 HOH A 71 571 31 HOH HOH . V 8 HOH A 72 572 175 HOH HOH . V 8 HOH A 73 573 117 HOH HOH . V 8 HOH A 74 574 5 HOH HOH . V 8 HOH A 75 575 42 HOH HOH . V 8 HOH A 76 576 174 HOH HOH . V 8 HOH A 77 577 220 HOH HOH . V 8 HOH A 78 578 221 HOH HOH . V 8 HOH A 79 579 57 HOH HOH . V 8 HOH A 80 580 203 HOH HOH . V 8 HOH A 81 581 169 HOH HOH . V 8 HOH A 82 582 37 HOH HOH . V 8 HOH A 83 583 38 HOH HOH . V 8 HOH A 84 584 116 HOH HOH . V 8 HOH A 85 585 149 HOH HOH . V 8 HOH A 86 586 32 HOH HOH . V 8 HOH A 87 587 177 HOH HOH . V 8 HOH A 88 588 62 HOH HOH . V 8 HOH A 89 589 165 HOH HOH . V 8 HOH A 90 590 21 HOH HOH . V 8 HOH A 91 591 43 HOH HOH . V 8 HOH A 92 592 155 HOH HOH . V 8 HOH A 93 593 30 HOH HOH . V 8 HOH A 94 594 100 HOH HOH . V 8 HOH A 95 595 85 HOH HOH . V 8 HOH A 96 596 79 HOH HOH . V 8 HOH A 97 597 39 HOH HOH . V 8 HOH A 98 598 1 HOH HOH . V 8 HOH A 99 599 91 HOH HOH . V 8 HOH A 100 600 60 HOH HOH . V 8 HOH A 101 601 7 HOH HOH . V 8 HOH A 102 602 28 HOH HOH . V 8 HOH A 103 603 25 HOH HOH . V 8 HOH A 104 604 47 HOH HOH . V 8 HOH A 105 605 46 HOH HOH . V 8 HOH A 106 606 40 HOH HOH . V 8 HOH A 107 607 78 HOH HOH . V 8 HOH A 108 608 89 HOH HOH . V 8 HOH A 109 609 11 HOH HOH . V 8 HOH A 110 610 9 HOH HOH . V 8 HOH A 111 611 20 HOH HOH . V 8 HOH A 112 612 211 HOH HOH . V 8 HOH A 113 613 19 HOH HOH . V 8 HOH A 114 614 121 HOH HOH . V 8 HOH A 115 615 139 HOH HOH . V 8 HOH A 116 616 18 HOH HOH . V 8 HOH A 117 617 208 HOH HOH . V 8 HOH A 118 618 182 HOH HOH . V 8 HOH A 119 619 196 HOH HOH . V 8 HOH A 120 620 140 HOH HOH . V 8 HOH A 121 621 150 HOH HOH . V 8 HOH A 122 622 10 HOH HOH . V 8 HOH A 123 623 218 HOH HOH . V 8 HOH A 124 624 34 HOH HOH . V 8 HOH A 125 625 112 HOH HOH . V 8 HOH A 126 626 93 HOH HOH . V 8 HOH A 127 627 215 HOH HOH . V 8 HOH A 128 628 96 HOH HOH . V 8 HOH A 129 629 17 HOH HOH . V 8 HOH A 130 630 81 HOH HOH . V 8 HOH A 131 631 136 HOH HOH . V 8 HOH A 132 632 86 HOH HOH . V 8 HOH A 133 633 2 HOH HOH . V 8 HOH A 134 634 83 HOH HOH . V 8 HOH A 135 635 73 HOH HOH . V 8 HOH A 136 636 29 HOH HOH . V 8 HOH A 137 637 69 HOH HOH . V 8 HOH A 138 638 59 HOH HOH . V 8 HOH A 139 639 24 HOH HOH . V 8 HOH A 140 640 53 HOH HOH . V 8 HOH A 141 641 90 HOH HOH . V 8 HOH A 142 642 122 HOH HOH . V 8 HOH A 143 643 22 HOH HOH . V 8 HOH A 144 644 68 HOH HOH . V 8 HOH A 145 645 120 HOH HOH . V 8 HOH A 146 646 99 HOH HOH . V 8 HOH A 147 647 102 HOH HOH . V 8 HOH A 148 648 63 HOH HOH . V 8 HOH A 149 649 118 HOH HOH . V 8 HOH A 150 650 200 HOH HOH . V 8 HOH A 151 651 119 HOH HOH . V 8 HOH A 152 652 51 HOH HOH . V 8 HOH A 153 653 154 HOH HOH . V 8 HOH A 154 654 56 HOH HOH . V 8 HOH A 155 655 123 HOH HOH . V 8 HOH A 156 656 148 HOH HOH . V 8 HOH A 157 657 186 HOH HOH . V 8 HOH A 158 658 58 HOH HOH . V 8 HOH A 159 659 141 HOH HOH . V 8 HOH A 160 660 161 HOH HOH . V 8 HOH A 161 661 202 HOH HOH . V 8 HOH A 162 662 105 HOH HOH . V 8 HOH A 163 663 101 HOH HOH . V 8 HOH A 164 664 159 HOH HOH . V 8 HOH A 165 665 88 HOH HOH . V 8 HOH A 166 666 114 HOH HOH . V 8 HOH A 167 667 133 HOH HOH . V 8 HOH A 168 668 6 HOH HOH . V 8 HOH A 169 669 214 HOH HOH . V 8 HOH A 170 670 50 HOH HOH . V 8 HOH A 171 671 44 HOH HOH . V 8 HOH A 172 672 142 HOH HOH . V 8 HOH A 173 673 153 HOH HOH . V 8 HOH A 174 674 35 HOH HOH . V 8 HOH A 175 675 206 HOH HOH . V 8 HOH A 176 676 151 HOH HOH . V 8 HOH A 177 677 172 HOH HOH . V 8 HOH A 178 678 213 HOH HOH . V 8 HOH A 179 679 158 HOH HOH . V 8 HOH A 180 680 185 HOH HOH . V 8 HOH A 181 681 77 HOH HOH . V 8 HOH A 182 682 75 HOH HOH . V 8 HOH A 183 683 55 HOH HOH . V 8 HOH A 184 684 157 HOH HOH . V 8 HOH A 185 685 72 HOH HOH . V 8 HOH A 186 686 146 HOH HOH . V 8 HOH A 187 687 224 HOH HOH . V 8 HOH A 188 688 168 HOH HOH . V 8 HOH A 189 689 216 HOH HOH . V 8 HOH A 190 690 210 HOH HOH . V 8 HOH A 191 691 166 HOH HOH . V 8 HOH A 192 692 103 HOH HOH . V 8 HOH A 193 693 131 HOH HOH . V 8 HOH A 194 694 178 HOH HOH . V 8 HOH A 195 695 129 HOH HOH . V 8 HOH A 196 696 156 HOH HOH . V 8 HOH A 197 697 225 HOH HOH . V 8 HOH A 198 698 127 HOH HOH . V 8 HOH A 199 699 193 HOH HOH . V 8 HOH A 200 700 124 HOH HOH . V 8 HOH A 201 701 71 HOH HOH . V 8 HOH A 202 702 212 HOH HOH . V 8 HOH A 203 703 194 HOH HOH . V 8 HOH A 204 704 187 HOH HOH . V 8 HOH A 205 705 13 HOH HOH . V 8 HOH A 206 706 217 HOH HOH . V 8 HOH A 207 707 197 HOH HOH . V 8 HOH A 208 708 223 HOH HOH . V 8 HOH A 209 709 189 HOH HOH . V 8 HOH A 210 710 152 HOH HOH . V 8 HOH A 211 711 95 HOH HOH . V 8 HOH A 212 712 188 HOH HOH . V 8 HOH A 213 713 167 HOH HOH . V 8 HOH A 214 714 192 HOH HOH . V 8 HOH A 215 715 195 HOH HOH . V 8 HOH A 216 716 190 HOH HOH . V 8 HOH A 217 717 191 HOH HOH . V 8 HOH A 218 718 183 HOH HOH . V 8 HOH A 219 719 108 HOH HOH . V 8 HOH A 220 720 162 HOH HOH . V 8 HOH A 221 721 109 HOH HOH . V 8 HOH A 222 722 160 HOH HOH . V 8 HOH A 223 723 180 HOH HOH . V 8 HOH A 224 724 137 HOH HOH . V 8 HOH A 225 725 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 6 0.855 2.27 -9.099 1 42.99 ? C1 EDO 413 A 1 HETATM 2 O O1 EDO . . . N 6 0.072 3.145 -8.277 1 41.59 ? O1 EDO 413 A 1 HETATM 3 C C2 EDO . . . N 6 2.179 2.929 -9.305 1 37.85 ? C2 EDO 413 A 1 HETATM 4 O O2 EDO . . . N 6 3.003 1.796 -9.512 1 43.54 ? O2 EDO 413 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #