data_5ICJ # _model_server_result.job_id wSPc8RC24KFI_MdSfmWnRA _model_server_result.datetime_utc '2024-10-19 12:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5icj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5ICJ # _exptl.entry_id 5ICJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,4,4-trifluoro-1-(3-phenyl-1-oxa-2,8-diazaspiro[4.5]dec-2-en-8-yl)butan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ICJ _cell.length_a 59.8 _cell.length_b 74.21 _cell.length_c 88.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ICJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H19 F3 N2 O2' _chem_comp.formula_weight 340.34 _chem_comp.id 69Y _chem_comp.mon_nstd_flag . _chem_comp.name 4,4,4-trifluoro-1-(3-phenyl-1-oxa-2,8-diazaspiro[4.5]dec-2-en-8-yl)butan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 69Y doub 1 n y C4 C5 69Y sing 2 n y F1 C14 69Y sing 3 n n C3 C2 69Y sing 4 n y C8 C 69Y sing 5 n n C8 C1 69Y sing 6 n n C5 C7 69Y doub 7 n y F2 C14 69Y sing 8 n n C16 C 69Y sing 9 n n C16 C15 69Y sing 10 n n C14 C13 69Y sing 11 n n C14 F 69Y sing 12 n n C13 C12 69Y sing 13 n n C12 C11 69Y sing 14 n n C2 C1 69Y sing 15 n n C2 C6 69Y doub 16 n y C C9 69Y sing 17 n n C O 69Y sing 18 n n C11 O1 69Y doub 19 n n C11 N1 69Y sing 20 n n C9 C10 69Y sing 21 n n C15 N1 69Y sing 22 n n C1 N 69Y doub 23 n n N1 C10 69Y sing 24 n n C7 C6 69Y sing 25 n y O N 69Y sing 26 n n C5 H1 69Y sing 27 n n C6 H2 69Y sing 28 n n C12 H3 69Y sing 29 n n C12 H4 69Y sing 30 n n C13 H5 69Y sing 31 n n C13 H6 69Y sing 32 n n C15 H7 69Y sing 33 n n C15 H8 69Y sing 34 n n C16 H9 69Y sing 35 n n C16 H10 69Y sing 36 n n C10 H11 69Y sing 37 n n C10 H12 69Y sing 38 n n C9 H13 69Y sing 39 n n C9 H14 69Y sing 40 n n C8 H15 69Y sing 41 n n C8 H16 69Y sing 42 n n C7 H17 69Y sing 43 n n C4 H18 69Y sing 44 n n C3 H19 69Y sing 45 n n # _atom_sites.entry_id 5ICJ _atom_sites.fract_transf_matrix[1][1] 0.016722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 69Y A 1 301 1 69Y 420 . D 2 69Y B 1 301 2 69Y 420 . E 3 HOH A 1 401 3 HOH HOH . E 3 HOH A 2 402 1 HOH HOH . E 3 HOH A 3 403 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 69Y . . . C 2 -19.345 -6.521 -6.002 1 47.61 ? C1 69Y 301 A 1 HETATM 2 C C2 69Y . . . C 2 -20.794 -6.744 -6.356 1 42.75 ? C2 69Y 301 A 1 HETATM 3 C C5 69Y . . . C 2 -23.515 -7.085 -7.012 1 42.43 ? C5 69Y 301 A 1 HETATM 4 C C6 69Y . . . C 2 -21.782 -6.692 -5.369 1 41.47 ? C6 69Y 301 A 1 HETATM 5 C C11 69Y . . . C 2 -13.169 -4.323 -6.154 1 51.13 ? C11 69Y 301 A 1 HETATM 6 C C12 69Y . . . C 2 -12.859 -2.881 -6.44 1 53.85 ? C12 69Y 301 A 1 HETATM 7 C C13 69Y . . . C 2 -11.376 -2.531 -6.364 1 60.55 ? C13 69Y 301 A 1 HETATM 8 C C14 69Y . . . C 2 -11.138 -1.015 -6.549 1 68.11 ? C14 69Y 301 A 1 HETATM 9 C C15 69Y . . . C 2 -15.623 -3.697 -6.061 1 45.43 ? C15 69Y 301 A 1 HETATM 10 C C16 69Y . . . C 2 -16.852 -4.34 -6.691 1 41.57 ? C16 69Y 301 A 1 HETATM 11 O O1 69Y . . . C 2 -12.246 -5.144 -6.169 1 47.61 ? O1 69Y 301 A 1 HETATM 12 F F2 69Y . . . C 2 -9.839 -0.841 -6.707 1 87.8 ? F2 69Y 301 A 1 HETATM 13 F F1 69Y . . . C 2 -11.799 -0.499 -7.586 1 72.23 ? F1 69Y 301 A 1 HETATM 14 F F 69Y . . . C 2 -11.515 -0.318 -5.493 1 64.31 ? F 69Y 301 A 1 HETATM 15 N N1 69Y . . . C 2 -14.47 -4.619 -5.886 1 47.12 ? N1 69Y 301 A 1 HETATM 16 C C10 69Y . . . C 2 -14.836 -5.898 -5.303 1 46.19 ? C10 69Y 301 A 1 HETATM 17 C C9 69Y . . . C 2 -15.867 -6.524 -6.228 1 43.9 ? C9 69Y 301 A 1 HETATM 18 C C 69Y . . . C 2 -17.149 -5.734 -6.208 1 43.92 ? C 69Y 301 A 1 HETATM 19 C C8 69Y . . . C 2 -18.227 -6.447 -7.033 1 47.8 ? C8 69Y 301 A 1 HETATM 20 N N 69Y . . . C 2 -18.889 -6.241 -4.842 1 44.22 ? N 69Y 301 A 1 HETATM 21 O O 69Y . . . C 2 -17.765 -5.667 -4.91 1 44.39 ? O 69Y 301 A 1 HETATM 22 C C7 69Y . . . C 2 -23.138 -6.864 -5.683 1 41.31 ? C7 69Y 301 A 1 HETATM 23 C C4 69Y . . . C 2 -22.525 -7.131 -8 1 44.76 ? C4 69Y 301 A 1 HETATM 24 C C3 69Y . . . C 2 -21.171 -6.948 -7.688 1 42.99 ? C3 69Y 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #