data_5ICM
#
_model_server_result.job_id            NH6clYPitTfyW3yNaXlO2Q 
_model_server_result.datetime_utc      '2024-11-14 19:53:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5icm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5ICM 
#
_exptl.entry_id    5ICM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ICM 
_cell.length_a            91.662 
_cell.length_b            91.662 
_cell.length_c            133.909 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ICM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.662 0 
3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.662 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc2 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc3 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc4 C NA NA . A NA 302 1_555 F O HOH . A HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc5 C NA NA . A NA 302 1_555 F O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc6 C NA NA . A NA 302 1_555 F O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5ICM 
_atom_sites.fract_transf_matrix[1][1]    0.01091 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01091 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007468 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 301 2 NAD NAD . 
C 3 NA A 1 302 1 NA NA . 
D 4 F45 A 1 303 1 F45 F45 . 
E 5 GLC A 1 304 1 GLC GLC . 
F 6 HOH A 1 401 149 HOH HOH . 
F 6 HOH A 2 402 207 HOH HOH . 
F 6 HOH A 3 403 97 HOH HOH . 
F 6 HOH A 4 404 209 HOH HOH . 
F 6 HOH A 5 405 43 HOH HOH . 
F 6 HOH A 6 406 158 HOH HOH . 
F 6 HOH A 7 407 30 HOH HOH . 
F 6 HOH A 8 408 127 HOH HOH . 
F 6 HOH A 9 409 161 HOH HOH . 
F 6 HOH A 10 410 162 HOH HOH . 
F 6 HOH A 11 411 189 HOH HOH . 
F 6 HOH A 12 412 19 HOH HOH . 
F 6 HOH A 13 413 226 HOH HOH . 
F 6 HOH A 14 414 126 HOH HOH . 
F 6 HOH A 15 415 168 HOH HOH . 
F 6 HOH A 16 416 16 HOH HOH . 
F 6 HOH A 17 417 184 HOH HOH . 
F 6 HOH A 18 418 194 HOH HOH . 
F 6 HOH A 19 419 208 HOH HOH . 
F 6 HOH A 20 420 13 HOH HOH . 
F 6 HOH A 21 421 117 HOH HOH . 
F 6 HOH A 22 422 140 HOH HOH . 
F 6 HOH A 23 423 113 HOH HOH . 
F 6 HOH A 24 424 78 HOH HOH . 
F 6 HOH A 25 425 3 HOH HOH . 
F 6 HOH A 26 426 6 HOH HOH . 
F 6 HOH A 27 427 1 HOH HOH . 
F 6 HOH A 28 428 42 HOH HOH . 
F 6 HOH A 29 429 53 HOH HOH . 
F 6 HOH A 30 430 22 HOH HOH . 
F 6 HOH A 31 431 65 HOH HOH . 
F 6 HOH A 32 432 33 HOH HOH . 
F 6 HOH A 33 433 203 HOH HOH . 
F 6 HOH A 34 434 25 HOH HOH . 
F 6 HOH A 35 435 73 HOH HOH . 
F 6 HOH A 36 436 143 HOH HOH . 
F 6 HOH A 37 437 69 HOH HOH . 
F 6 HOH A 38 438 48 HOH HOH . 
F 6 HOH A 39 439 95 HOH HOH . 
F 6 HOH A 40 440 37 HOH HOH . 
F 6 HOH A 41 441 50 HOH HOH . 
F 6 HOH A 42 442 217 HOH HOH . 
F 6 HOH A 43 443 17 HOH HOH . 
F 6 HOH A 44 444 104 HOH HOH . 
F 6 HOH A 45 445 99 HOH HOH . 
F 6 HOH A 46 446 26 HOH HOH . 
F 6 HOH A 47 447 119 HOH HOH . 
F 6 HOH A 48 448 145 HOH HOH . 
F 6 HOH A 49 449 90 HOH HOH . 
F 6 HOH A 50 450 60 HOH HOH . 
F 6 HOH A 51 451 142 HOH HOH . 
F 6 HOH A 52 452 219 HOH HOH . 
F 6 HOH A 53 453 63 HOH HOH . 
F 6 HOH A 54 454 62 HOH HOH . 
F 6 HOH A 55 455 107 HOH HOH . 
F 6 HOH A 56 456 139 HOH HOH . 
F 6 HOH A 57 457 216 HOH HOH . 
F 6 HOH A 58 458 21 HOH HOH . 
F 6 HOH A 59 459 9 HOH HOH . 
F 6 HOH A 60 460 71 HOH HOH . 
F 6 HOH A 61 461 109 HOH HOH . 
F 6 HOH A 62 462 46 HOH HOH . 
F 6 HOH A 63 463 98 HOH HOH . 
F 6 HOH A 64 464 166 HOH HOH . 
F 6 HOH A 65 465 14 HOH HOH . 
F 6 HOH A 66 466 8 HOH HOH . 
F 6 HOH A 67 467 80 HOH HOH . 
F 6 HOH A 68 468 86 HOH HOH . 
F 6 HOH A 69 469 94 HOH HOH . 
F 6 HOH A 70 470 163 HOH HOH . 
F 6 HOH A 71 471 49 HOH HOH . 
F 6 HOH A 72 472 55 HOH HOH . 
F 6 HOH A 73 473 91 HOH HOH . 
F 6 HOH A 74 474 79 HOH HOH . 
F 6 HOH A 75 475 10 HOH HOH . 
F 6 HOH A 76 476 210 HOH HOH . 
F 6 HOH A 77 477 35 HOH HOH . 
F 6 HOH A 78 478 23 HOH HOH . 
F 6 HOH A 79 479 29 HOH HOH . 
F 6 HOH A 80 480 110 HOH HOH . 
F 6 HOH A 81 481 32 HOH HOH . 
F 6 HOH A 82 482 192 HOH HOH . 
F 6 HOH A 83 483 170 HOH HOH . 
F 6 HOH A 84 484 24 HOH HOH . 
F 6 HOH A 85 485 135 HOH HOH . 
F 6 HOH A 86 486 4 HOH HOH . 
F 6 HOH A 87 487 134 HOH HOH . 
F 6 HOH A 88 488 183 HOH HOH . 
F 6 HOH A 89 489 36 HOH HOH . 
F 6 HOH A 90 490 212 HOH HOH . 
F 6 HOH A 91 491 20 HOH HOH . 
F 6 HOH A 92 492 5 HOH HOH . 
F 6 HOH A 93 493 187 HOH HOH . 
F 6 HOH A 94 494 152 HOH HOH . 
F 6 HOH A 95 495 159 HOH HOH . 
F 6 HOH A 96 496 89 HOH HOH . 
F 6 HOH A 97 497 120 HOH HOH . 
F 6 HOH A 98 498 52 HOH HOH . 
F 6 HOH A 99 499 100 HOH HOH . 
F 6 HOH A 100 500 15 HOH HOH . 
F 6 HOH A 101 501 101 HOH HOH . 
F 6 HOH A 102 502 56 HOH HOH . 
F 6 HOH A 103 503 123 HOH HOH . 
F 6 HOH A 104 504 129 HOH HOH . 
F 6 HOH A 105 505 164 HOH HOH . 
F 6 HOH A 106 506 128 HOH HOH . 
F 6 HOH A 107 507 202 HOH HOH . 
F 6 HOH A 108 508 58 HOH HOH . 
F 6 HOH A 109 509 7 HOH HOH . 
F 6 HOH A 110 510 11 HOH HOH . 
F 6 HOH A 111 511 172 HOH HOH . 
F 6 HOH A 112 512 131 HOH HOH . 
F 6 HOH A 113 513 18 HOH HOH . 
F 6 HOH A 114 514 146 HOH HOH . 
F 6 HOH A 115 515 34 HOH HOH . 
F 6 HOH A 116 516 179 HOH HOH . 
F 6 HOH A 117 517 165 HOH HOH . 
F 6 HOH A 118 518 138 HOH HOH . 
F 6 HOH A 119 519 64 HOH HOH . 
F 6 HOH A 120 520 118 HOH HOH . 
F 6 HOH A 121 521 27 HOH HOH . 
F 6 HOH A 122 522 12 HOH HOH . 
F 6 HOH A 123 523 211 HOH HOH . 
F 6 HOH A 124 524 206 HOH HOH . 
F 6 HOH A 125 525 45 HOH HOH . 
F 6 HOH A 126 526 201 HOH HOH . 
F 6 HOH A 127 527 130 HOH HOH . 
F 6 HOH A 128 528 39 HOH HOH . 
F 6 HOH A 129 529 61 HOH HOH . 
F 6 HOH A 130 530 87 HOH HOH . 
F 6 HOH A 131 531 77 HOH HOH . 
F 6 HOH A 132 532 47 HOH HOH . 
F 6 HOH A 133 533 185 HOH HOH . 
F 6 HOH A 134 534 220 HOH HOH . 
F 6 HOH A 135 535 224 HOH HOH . 
F 6 HOH A 136 536 157 HOH HOH . 
F 6 HOH A 137 537 154 HOH HOH . 
F 6 HOH A 138 538 40 HOH HOH . 
F 6 HOH A 139 539 148 HOH HOH . 
F 6 HOH A 140 540 147 HOH HOH . 
F 6 HOH A 141 541 150 HOH HOH . 
F 6 HOH A 142 542 200 HOH HOH . 
F 6 HOH A 143 543 121 HOH HOH . 
F 6 HOH A 144 544 96 HOH HOH . 
F 6 HOH A 145 545 116 HOH HOH . 
F 6 HOH A 146 546 44 HOH HOH . 
F 6 HOH A 147 547 28 HOH HOH . 
F 6 HOH A 148 548 167 HOH HOH . 
F 6 HOH A 149 549 221 HOH HOH . 
F 6 HOH A 150 550 122 HOH HOH . 
F 6 HOH A 151 551 180 HOH HOH . 
F 6 HOH A 152 552 171 HOH HOH . 
F 6 HOH A 153 553 136 HOH HOH . 
F 6 HOH A 154 554 74 HOH HOH . 
F 6 HOH A 155 555 41 HOH HOH . 
F 6 HOH A 156 556 103 HOH HOH . 
F 6 HOH A 157 557 151 HOH HOH . 
F 6 HOH A 158 558 125 HOH HOH . 
F 6 HOH A 159 559 54 HOH HOH . 
F 6 HOH A 160 560 70 HOH HOH . 
F 6 HOH A 161 561 108 HOH HOH . 
F 6 HOH A 162 562 182 HOH HOH . 
F 6 HOH A 163 563 93 HOH HOH . 
F 6 HOH A 164 564 31 HOH HOH . 
F 6 HOH A 165 565 92 HOH HOH . 
F 6 HOH A 166 566 175 HOH HOH . 
F 6 HOH A 167 567 193 HOH HOH . 
F 6 HOH A 168 568 213 HOH HOH . 
F 6 HOH A 169 569 196 HOH HOH . 
F 6 HOH A 170 570 81 HOH HOH . 
F 6 HOH A 171 571 177 HOH HOH . 
F 6 HOH A 172 572 59 HOH HOH . 
F 6 HOH A 173 573 51 HOH HOH . 
F 6 HOH A 174 574 223 HOH HOH . 
F 6 HOH A 175 575 137 HOH HOH . 
F 6 HOH A 176 576 215 HOH HOH . 
F 6 HOH A 177 577 124 HOH HOH . 
F 6 HOH A 178 578 178 HOH HOH . 
F 6 HOH A 179 579 188 HOH HOH . 
F 6 HOH A 180 580 153 HOH HOH . 
F 6 HOH A 181 581 115 HOH HOH . 
F 6 HOH A 182 582 75 HOH HOH . 
F 6 HOH A 183 583 174 HOH HOH . 
F 6 HOH A 184 584 173 HOH HOH . 
F 6 HOH A 185 585 57 HOH HOH . 
F 6 HOH A 186 586 197 HOH HOH . 
F 6 HOH A 187 587 225 HOH HOH . 
F 6 HOH A 188 588 190 HOH HOH . 
F 6 HOH A 189 589 199 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -4.864 
_atom_site.Cartn_y               -10.939 
_atom_site.Cartn_z               -21.008 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        25.52 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#