data_5ICM # _model_server_result.job_id 1YgYkZMuiEyUzHccBRVx4w _model_server_result.datetime_utc '2024-12-21 16:08:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5icm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5ICM # _exptl.entry_id 5ICM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.291 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[6-(3,4-dihydroxyphenyl)pyridin-2-yl](4-fluoro-3-hydroxyphenyl)methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ICM _cell.length_a 91.662 _cell.length_b 91.662 _cell.length_c 133.909 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ICM _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.662 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.662 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 C NA NA . A NA 302 1_555 F O HOH . A HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc5 C NA NA . A NA 302 1_555 F O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc6 C NA NA . A NA 302 1_555 F O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? # _chem_comp.formula 'C18 H12 F N O4' _chem_comp.formula_weight 325.291 _chem_comp.id F45 _chem_comp.mon_nstd_flag . _chem_comp.name '[6-(3,4-dihydroxyphenyl)pyridin-2-yl](4-fluoro-3-hydroxyphenyl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C9 F45 doub 83 n n O3 C17 F45 sing 84 n n C17 C16 F45 doub 85 n y C17 C F45 sing 86 n y C16 C3 F45 sing 87 n y C9 C8 F45 sing 88 n n C9 C10 F45 sing 89 n n C7 C8 F45 doub 90 n y C7 C6 F45 sing 91 n y C8 N F45 sing 92 n y C6 C5 F45 doub 93 n y N C4 F45 doub 94 n y C5 C4 F45 sing 95 n y O C F45 sing 96 n n C4 C3 F45 sing 97 n n C C1 F45 doub 98 n y C3 C2 F45 doub 99 n y C15 C10 F45 doub 100 n y C15 C14 F45 sing 101 n y C1 C2 F45 sing 102 n y C10 C11 F45 sing 103 n y O2 C14 F45 sing 104 n n C14 C13 F45 doub 105 n y C11 C12 F45 doub 106 n y C13 C12 F45 sing 107 n y C13 F F45 sing 108 n n C12 H1 F45 sing 109 n n C11 H2 F45 sing 110 n n O2 H3 F45 sing 111 n n C15 H4 F45 sing 112 n n C7 H5 F45 sing 113 n n C6 H6 F45 sing 114 n n C5 H7 F45 sing 115 n n C2 H8 F45 sing 116 n n C1 H9 F45 sing 117 n n C16 H10 F45 sing 118 n n O3 H11 F45 sing 119 n n O H12 F45 sing 120 n n # _atom_sites.entry_id 5ICM _atom_sites.fract_transf_matrix[1][1] 0.01091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 2 NAD NAD . C 3 NA A 1 302 1 NA NA . D 4 F45 A 1 303 1 F45 F45 . E 5 GLC A 1 304 1 GLC GLC . F 6 HOH A 1 401 149 HOH HOH . F 6 HOH A 2 402 207 HOH HOH . F 6 HOH A 3 403 97 HOH HOH . F 6 HOH A 4 404 209 HOH HOH . F 6 HOH A 5 405 43 HOH HOH . F 6 HOH A 6 406 158 HOH HOH . F 6 HOH A 7 407 30 HOH HOH . F 6 HOH A 8 408 127 HOH HOH . F 6 HOH A 9 409 161 HOH HOH . F 6 HOH A 10 410 162 HOH HOH . F 6 HOH A 11 411 189 HOH HOH . F 6 HOH A 12 412 19 HOH HOH . F 6 HOH A 13 413 226 HOH HOH . F 6 HOH A 14 414 126 HOH HOH . F 6 HOH A 15 415 168 HOH HOH . F 6 HOH A 16 416 16 HOH HOH . F 6 HOH A 17 417 184 HOH HOH . F 6 HOH A 18 418 194 HOH HOH . F 6 HOH A 19 419 208 HOH HOH . F 6 HOH A 20 420 13 HOH HOH . F 6 HOH A 21 421 117 HOH HOH . F 6 HOH A 22 422 140 HOH HOH . F 6 HOH A 23 423 113 HOH HOH . F 6 HOH A 24 424 78 HOH HOH . F 6 HOH A 25 425 3 HOH HOH . F 6 HOH A 26 426 6 HOH HOH . F 6 HOH A 27 427 1 HOH HOH . F 6 HOH A 28 428 42 HOH HOH . F 6 HOH A 29 429 53 HOH HOH . F 6 HOH A 30 430 22 HOH HOH . F 6 HOH A 31 431 65 HOH HOH . F 6 HOH A 32 432 33 HOH HOH . F 6 HOH A 33 433 203 HOH HOH . F 6 HOH A 34 434 25 HOH HOH . F 6 HOH A 35 435 73 HOH HOH . F 6 HOH A 36 436 143 HOH HOH . F 6 HOH A 37 437 69 HOH HOH . F 6 HOH A 38 438 48 HOH HOH . F 6 HOH A 39 439 95 HOH HOH . F 6 HOH A 40 440 37 HOH HOH . F 6 HOH A 41 441 50 HOH HOH . F 6 HOH A 42 442 217 HOH HOH . F 6 HOH A 43 443 17 HOH HOH . F 6 HOH A 44 444 104 HOH HOH . F 6 HOH A 45 445 99 HOH HOH . F 6 HOH A 46 446 26 HOH HOH . F 6 HOH A 47 447 119 HOH HOH . F 6 HOH A 48 448 145 HOH HOH . F 6 HOH A 49 449 90 HOH HOH . F 6 HOH A 50 450 60 HOH HOH . F 6 HOH A 51 451 142 HOH HOH . F 6 HOH A 52 452 219 HOH HOH . F 6 HOH A 53 453 63 HOH HOH . F 6 HOH A 54 454 62 HOH HOH . F 6 HOH A 55 455 107 HOH HOH . F 6 HOH A 56 456 139 HOH HOH . F 6 HOH A 57 457 216 HOH HOH . F 6 HOH A 58 458 21 HOH HOH . F 6 HOH A 59 459 9 HOH HOH . F 6 HOH A 60 460 71 HOH HOH . F 6 HOH A 61 461 109 HOH HOH . F 6 HOH A 62 462 46 HOH HOH . F 6 HOH A 63 463 98 HOH HOH . F 6 HOH A 64 464 166 HOH HOH . F 6 HOH A 65 465 14 HOH HOH . F 6 HOH A 66 466 8 HOH HOH . F 6 HOH A 67 467 80 HOH HOH . F 6 HOH A 68 468 86 HOH HOH . F 6 HOH A 69 469 94 HOH HOH . F 6 HOH A 70 470 163 HOH HOH . F 6 HOH A 71 471 49 HOH HOH . F 6 HOH A 72 472 55 HOH HOH . F 6 HOH A 73 473 91 HOH HOH . F 6 HOH A 74 474 79 HOH HOH . F 6 HOH A 75 475 10 HOH HOH . F 6 HOH A 76 476 210 HOH HOH . F 6 HOH A 77 477 35 HOH HOH . F 6 HOH A 78 478 23 HOH HOH . F 6 HOH A 79 479 29 HOH HOH . F 6 HOH A 80 480 110 HOH HOH . F 6 HOH A 81 481 32 HOH HOH . F 6 HOH A 82 482 192 HOH HOH . F 6 HOH A 83 483 170 HOH HOH . F 6 HOH A 84 484 24 HOH HOH . F 6 HOH A 85 485 135 HOH HOH . F 6 HOH A 86 486 4 HOH HOH . F 6 HOH A 87 487 134 HOH HOH . F 6 HOH A 88 488 183 HOH HOH . F 6 HOH A 89 489 36 HOH HOH . F 6 HOH A 90 490 212 HOH HOH . F 6 HOH A 91 491 20 HOH HOH . F 6 HOH A 92 492 5 HOH HOH . F 6 HOH A 93 493 187 HOH HOH . F 6 HOH A 94 494 152 HOH HOH . F 6 HOH A 95 495 159 HOH HOH . F 6 HOH A 96 496 89 HOH HOH . F 6 HOH A 97 497 120 HOH HOH . F 6 HOH A 98 498 52 HOH HOH . F 6 HOH A 99 499 100 HOH HOH . F 6 HOH A 100 500 15 HOH HOH . F 6 HOH A 101 501 101 HOH HOH . F 6 HOH A 102 502 56 HOH HOH . F 6 HOH A 103 503 123 HOH HOH . F 6 HOH A 104 504 129 HOH HOH . F 6 HOH A 105 505 164 HOH HOH . F 6 HOH A 106 506 128 HOH HOH . F 6 HOH A 107 507 202 HOH HOH . F 6 HOH A 108 508 58 HOH HOH . F 6 HOH A 109 509 7 HOH HOH . F 6 HOH A 110 510 11 HOH HOH . F 6 HOH A 111 511 172 HOH HOH . F 6 HOH A 112 512 131 HOH HOH . F 6 HOH A 113 513 18 HOH HOH . F 6 HOH A 114 514 146 HOH HOH . F 6 HOH A 115 515 34 HOH HOH . F 6 HOH A 116 516 179 HOH HOH . F 6 HOH A 117 517 165 HOH HOH . F 6 HOH A 118 518 138 HOH HOH . F 6 HOH A 119 519 64 HOH HOH . F 6 HOH A 120 520 118 HOH HOH . F 6 HOH A 121 521 27 HOH HOH . F 6 HOH A 122 522 12 HOH HOH . F 6 HOH A 123 523 211 HOH HOH . F 6 HOH A 124 524 206 HOH HOH . F 6 HOH A 125 525 45 HOH HOH . F 6 HOH A 126 526 201 HOH HOH . F 6 HOH A 127 527 130 HOH HOH . F 6 HOH A 128 528 39 HOH HOH . F 6 HOH A 129 529 61 HOH HOH . F 6 HOH A 130 530 87 HOH HOH . F 6 HOH A 131 531 77 HOH HOH . F 6 HOH A 132 532 47 HOH HOH . F 6 HOH A 133 533 185 HOH HOH . F 6 HOH A 134 534 220 HOH HOH . F 6 HOH A 135 535 224 HOH HOH . F 6 HOH A 136 536 157 HOH HOH . F 6 HOH A 137 537 154 HOH HOH . F 6 HOH A 138 538 40 HOH HOH . F 6 HOH A 139 539 148 HOH HOH . F 6 HOH A 140 540 147 HOH HOH . F 6 HOH A 141 541 150 HOH HOH . F 6 HOH A 142 542 200 HOH HOH . F 6 HOH A 143 543 121 HOH HOH . F 6 HOH A 144 544 96 HOH HOH . F 6 HOH A 145 545 116 HOH HOH . F 6 HOH A 146 546 44 HOH HOH . F 6 HOH A 147 547 28 HOH HOH . F 6 HOH A 148 548 167 HOH HOH . F 6 HOH A 149 549 221 HOH HOH . F 6 HOH A 150 550 122 HOH HOH . F 6 HOH A 151 551 180 HOH HOH . F 6 HOH A 152 552 171 HOH HOH . F 6 HOH A 153 553 136 HOH HOH . F 6 HOH A 154 554 74 HOH HOH . F 6 HOH A 155 555 41 HOH HOH . F 6 HOH A 156 556 103 HOH HOH . F 6 HOH A 157 557 151 HOH HOH . F 6 HOH A 158 558 125 HOH HOH . F 6 HOH A 159 559 54 HOH HOH . F 6 HOH A 160 560 70 HOH HOH . F 6 HOH A 161 561 108 HOH HOH . F 6 HOH A 162 562 182 HOH HOH . F 6 HOH A 163 563 93 HOH HOH . F 6 HOH A 164 564 31 HOH HOH . F 6 HOH A 165 565 92 HOH HOH . F 6 HOH A 166 566 175 HOH HOH . F 6 HOH A 167 567 193 HOH HOH . F 6 HOH A 168 568 213 HOH HOH . F 6 HOH A 169 569 196 HOH HOH . F 6 HOH A 170 570 81 HOH HOH . F 6 HOH A 171 571 177 HOH HOH . F 6 HOH A 172 572 59 HOH HOH . F 6 HOH A 173 573 51 HOH HOH . F 6 HOH A 174 574 223 HOH HOH . F 6 HOH A 175 575 137 HOH HOH . F 6 HOH A 176 576 215 HOH HOH . F 6 HOH A 177 577 124 HOH HOH . F 6 HOH A 178 578 178 HOH HOH . F 6 HOH A 179 579 188 HOH HOH . F 6 HOH A 180 580 153 HOH HOH . F 6 HOH A 181 581 115 HOH HOH . F 6 HOH A 182 582 75 HOH HOH . F 6 HOH A 183 583 174 HOH HOH . F 6 HOH A 184 584 173 HOH HOH . F 6 HOH A 185 585 57 HOH HOH . F 6 HOH A 186 586 197 HOH HOH . F 6 HOH A 187 587 225 HOH HOH . F 6 HOH A 188 588 190 HOH HOH . F 6 HOH A 189 589 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F F45 . . . D 4 -11.534 -38.576 -9.649 1 21.77 ? F F45 303 A 1 HETATM 2 C C13 F45 . . . D 4 -12.414 -38.335 -10.656 1 16.93 ? C13 F45 303 A 1 HETATM 3 C C12 F45 . . . D 4 -13.756 -38.317 -10.39 1 22.57 ? C12 F45 303 A 1 HETATM 4 C C11 F45 . . . D 4 -14.63 -38.057 -11.424 1 27.4 ? C11 F45 303 A 1 HETATM 5 C C14 F45 . . . D 4 -11.897 -38.124 -11.929 1 17.92 ? C14 F45 303 A 1 HETATM 6 O O2 F45 . . . D 4 -10.553 -38.179 -12.203 1 20.76 ? O2 F45 303 A 1 HETATM 7 C C15 F45 . . . D 4 -12.787 -37.862 -12.965 1 19.21 ? C15 F45 303 A 1 HETATM 8 C C10 F45 . . . D 4 -14.157 -37.817 -12.713 1 24.12 ? C10 F45 303 A 1 HETATM 9 C C9 F45 . . . D 4 -15.122 -37.489 -13.798 1 28.42 ? C9 F45 303 A 1 HETATM 10 O O1 F45 . . . D 4 -14.757 -36.859 -14.785 1 27.57 ? O1 F45 303 A 1 HETATM 11 C C8 F45 . . . D 4 -16.558 -37.906 -13.654 1 24.24 ? C8 F45 303 A 1 HETATM 12 C C7 F45 . . . D 4 -17.575 -36.967 -13.724 1 27.75 ? C7 F45 303 A 1 HETATM 13 C C6 F45 . . . D 4 -18.881 -37.406 -13.627 1 31.53 ? C6 F45 303 A 1 HETATM 14 C C5 F45 . . . D 4 -19.136 -38.757 -13.48 1 26.05 ? C5 F45 303 A 1 HETATM 15 N N F45 . . . D 4 -16.786 -39.22 -13.5 1 26.53 ? N F45 303 A 1 HETATM 16 C C4 F45 . . . D 4 -18.065 -39.637 -13.43 1 25.88 ? C4 F45 303 A 1 HETATM 17 C C3 F45 . . . D 4 -18.266 -41.106 -13.38 1 24.81 ? C3 F45 303 A 1 HETATM 18 C C2 F45 . . . D 4 -19.416 -41.665 -12.83 1 26.21 ? C2 F45 303 A 1 HETATM 19 C C1 F45 . . . D 4 -19.628 -43.029 -12.861 1 28.29 ? C1 F45 303 A 1 HETATM 20 C C16 F45 . . . D 4 -17.319 -41.953 -13.95 1 24.41 ? C16 F45 303 A 1 HETATM 21 C C17 F45 . . . D 4 -17.518 -43.319 -13.981 1 35.11 ? C17 F45 303 A 1 HETATM 22 O O3 F45 . . . D 4 -16.59 -44.122 -14.564 1 35.31 ? O3 F45 303 A 1 HETATM 23 C C F45 . . . D 4 -18.677 -43.868 -13.428 1 31.7 ? C F45 303 A 1 HETATM 24 O O F45 . . . D 4 -18.818 -45.215 -13.432 1 31.56 ? O F45 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #