data_5ICN # _model_server_result.job_id RJsq1Xdp4WdTyIdImwbocw _model_server_result.datetime_utc '2024-11-08 20:50:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5icn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5ICN # _exptl.entry_id 5ICN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ICN _cell.length_a 107.815 _cell.length_b 107.815 _cell.length_c 134.161 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ICN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -161.7225 93.370529 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ALA 6 C ALA 15 1_555 C N 6A0 7 C 6A0 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 C C 6A0 7 C 6A0 16 1_555 C N ARG 8 C ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 B O ASP 174 B ASP 174 1_555 F K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc2 B OD1 ASP 174 B ASP 174 1_555 F K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc3 B OD1 ASP 176 B ASP 176 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc4 B O ASP 176 B ASP 176 1_555 F K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc5 B ND1 HIS 178 B HIS 178 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 B O HIS 178 B HIS 178 1_555 F K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.177 ? metalc ? metalc7 B O PHE 187 B PHE 187 1_555 G K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc8 B O THR 190 B THR 190 1_555 G K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.265 ? metalc ? metalc9 B O VAL 193 B VAL 193 1_555 G K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc10 B OG SER 197 B SER 197 1_555 F K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc11 B O PHE 198 B PHE 198 1_555 F K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc12 B OD2 ASP 264 B ASP 264 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc13 E ZN ZN . B ZN 401 1_555 C O2 6A0 7 C 6A0 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 179 n n C1 C6 IHP sing 180 n n C1 O11 IHP sing 181 n n C1 H1 IHP sing 182 n n C2 C3 IHP sing 183 n n C2 O12 IHP sing 184 n n C2 H2 IHP sing 185 n n C3 C4 IHP sing 186 n n C3 O13 IHP sing 187 n n C3 H3 IHP sing 188 n n C4 C5 IHP sing 189 n n C4 O14 IHP sing 190 n n C4 H4 IHP sing 191 n n C5 C6 IHP sing 192 n n C5 O15 IHP sing 193 n n C5 H5 IHP sing 194 n n C6 O16 IHP sing 195 n n C6 H6 IHP sing 196 n n O11 P1 IHP sing 197 n n P1 O21 IHP doub 198 n n P1 O31 IHP sing 199 n n P1 O41 IHP sing 200 n n O31 H31 IHP sing 201 n n O41 H41 IHP sing 202 n n O12 P2 IHP sing 203 n n P2 O22 IHP doub 204 n n P2 O32 IHP sing 205 n n P2 O42 IHP sing 206 n n O32 H32 IHP sing 207 n n O42 H42 IHP sing 208 n n O13 P3 IHP sing 209 n n P3 O23 IHP doub 210 n n P3 O33 IHP sing 211 n n P3 O43 IHP sing 212 n n O33 H33 IHP sing 213 n n O43 H43 IHP sing 214 n n O14 P4 IHP sing 215 n n P4 O24 IHP doub 216 n n P4 O34 IHP sing 217 n n P4 O44 IHP sing 218 n n O34 H34 IHP sing 219 n n O44 H44 IHP sing 220 n n O15 P5 IHP sing 221 n n P5 O25 IHP doub 222 n n P5 O35 IHP sing 223 n n P5 O45 IHP sing 224 n n O35 H35 IHP sing 225 n n O45 H45 IHP sing 226 n n O16 P6 IHP sing 227 n n P6 O26 IHP doub 228 n n P6 O36 IHP sing 229 n n P6 O46 IHP sing 230 n n O36 H36 IHP sing 231 n n O46 H46 IHP sing 232 n n # _atom_sites.entry_id 5ICN _atom_sites.fract_transf_matrix[1][1] 0.009275 _atom_sites.fract_transf_matrix[1][2] 0.005355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IHP A 1 401 504 IHP I6P . E 5 ZN B 1 401 500 ZN ZN . F 6 K B 1 402 502 K K . G 6 K B 1 403 503 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . D 4 -47.802 35.612 -6.582 0.7 29.86 ? C1 IHP 401 A 1 HETATM 2 C C2 IHP . . . D 4 -49.217 35.844 -6.094 0.7 30.27 ? C2 IHP 401 A 1 HETATM 3 C C3 IHP . . . D 4 -49.711 34.641 -5.303 0.7 29.92 ? C3 IHP 401 A 1 HETATM 4 C C4 IHP . . . D 4 -48.805 34.354 -4.103 0.7 28.79 ? C4 IHP 401 A 1 HETATM 5 C C5 IHP . . . D 4 -47.341 34.227 -4.532 0.7 29.01 ? C5 IHP 401 A 1 HETATM 6 C C6 IHP . . . D 4 -46.864 35.406 -5.389 0.7 29.42 ? C6 IHP 401 A 1 HETATM 7 O O11 IHP . . . D 4 -47.433 36.712 -7.414 0.7 29.66 ? O11 IHP 401 A 1 HETATM 8 P P1 IHP . . . D 4 -47.155 36.457 -8.986 0.7 28.68 ? P1 IHP 401 A 1 HETATM 9 O O21 IHP . . . D 4 -48.336 35.664 -9.494 0.7 27.91 ? O21 IHP 401 A 1 HETATM 10 O O31 IHP . . . D 4 -45.878 35.649 -8.97 0.7 28.25 ? O31 IHP 401 A 1 HETATM 11 O O41 IHP . . . D 4 -47.044 37.868 -9.527 0.7 29.07 ? O41 IHP 401 A 1 HETATM 12 O O12 IHP . . . D 4 -50.066 36.056 -7.219 0.7 31.64 ? O12 IHP 401 A 1 HETATM 13 P P2 IHP . . . D 4 -50.859 37.452 -7.331 0.7 34.18 ? P2 IHP 401 A 1 HETATM 14 O O22 IHP . . . D 4 -51.963 37.202 -8.349 0.7 34 ? O22 IHP 401 A 1 HETATM 15 O O32 IHP . . . D 4 -51.319 37.645 -5.895 0.7 34.15 ? O32 IHP 401 A 1 HETATM 16 O O42 IHP . . . D 4 -49.806 38.448 -7.786 0.7 33.23 ? O42 IHP 401 A 1 HETATM 17 O O13 IHP . . . D 4 -49.855 33.497 -6.17 0.7 30.89 ? O13 IHP 401 A 1 HETATM 18 P P3 IHP . . . D 4 -51.304 32.791 -6.411 0.7 31.73 ? P3 IHP 401 A 1 HETATM 19 O O23 IHP . . . D 4 -52.179 33.974 -6.781 0.7 31.33 ? O23 IHP 401 A 1 HETATM 20 O O33 IHP . . . D 4 -51.136 31.769 -7.544 0.7 30.65 ? O33 IHP 401 A 1 HETATM 21 O O43 IHP . . . D 4 -51.645 32.223 -5.042 0.7 29.91 ? O43 IHP 401 A 1 HETATM 22 O O14 IHP . . . D 4 -49.269 33.163 -3.434 0.7 26.85 ? O14 IHP 401 A 1 HETATM 23 P P4 IHP . . . D 4 -49.653 33.132 -1.866 0.7 25.16 ? P4 IHP 401 A 1 HETATM 24 O O24 IHP . . . D 4 -48.308 33.297 -1.205 0.7 25.3 ? O24 IHP 401 A 1 HETATM 25 O O34 IHP . . . D 4 -50.577 34.311 -1.726 0.7 25.48 ? O34 IHP 401 A 1 HETATM 26 O O44 IHP . . . D 4 -50.318 31.812 -1.567 0.7 24 ? O44 IHP 401 A 1 HETATM 27 O O15 IHP . . . D 4 -46.53 34.112 -3.362 0.7 29.45 ? O15 IHP 401 A 1 HETATM 28 P P5 IHP . . . D 4 -45.563 32.832 -3.165 0.7 30.43 ? P5 IHP 401 A 1 HETATM 29 O O25 IHP . . . D 4 -44.533 32.984 -4.273 0.7 29.9 ? O25 IHP 401 A 1 HETATM 30 O O35 IHP . . . D 4 -45.072 33.001 -1.74 0.7 28.79 ? O35 IHP 401 A 1 HETATM 31 O O45 IHP . . . D 4 -46.441 31.616 -3.365 0.7 30.59 ? O45 IHP 401 A 1 HETATM 32 O O16 IHP . . . D 4 -45.54 35.128 -5.853 0.7 29.37 ? O16 IHP 401 A 1 HETATM 33 P P6 IHP . . . D 4 -44.262 36.006 -5.401 0.7 29.55 ? P6 IHP 401 A 1 HETATM 34 O O26 IHP . . . D 4 -43.112 35.37 -6.153 0.7 28.88 ? O26 IHP 401 A 1 HETATM 35 O O36 IHP . . . D 4 -44.617 37.424 -5.822 0.7 29.48 ? O36 IHP 401 A 1 HETATM 36 O O46 IHP . . . D 4 -44.186 35.8 -3.903 0.7 29.3 ? O46 IHP 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #