data_5ICP # _model_server_result.job_id J1naWFwt9zUMx4MsIP463g _model_server_result.datetime_utc '2024-10-19 16:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5icp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5ICP # _exptl.entry_id 5ICP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.835 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2S)-2-(4-chlorophenyl)pyrrolidin-1-yl](5-methylimidazo[5,1-b][1,3,4]thiadiazol-2-yl)methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ICP _cell.length_a 70.39 _cell.length_b 70.391 _cell.length_c 168.739 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ICP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H15 Cl N4 O S' _chem_comp.formula_weight 346.835 _chem_comp.id 69Z _chem_comp.mon_nstd_flag . _chem_comp.name '[(2S)-2-(4-chlorophenyl)pyrrolidin-1-yl](5-methylimidazo[5,1-b][1,3,4]thiadiazol-2-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C2 69Z sing 1 n n C2 C7 69Z doub 2 n y C2 C3 69Z sing 3 n y C7 C6 69Z sing 4 n y C3 C4 69Z doub 5 n y C23 C22 69Z sing 6 n n C6 C5 69Z doub 7 n y C4 C5 69Z sing 8 n y C22 N21 69Z doub 9 n y C22 N18 69Z sing 10 n y C5 C8 69Z sing 11 n n N21 C20 69Z sing 12 n y N18 N17 69Z sing 13 n y N18 C19 69Z sing 14 n y N17 C16 69Z doub 15 n y C8 C10 69Z sing 16 n n C8 N13 69Z sing 17 n n C20 C19 69Z doub 18 n y C10 C11 69Z sing 19 n n C11 C12 69Z sing 20 n n C19 S24 69Z sing 21 n y N13 C12 69Z sing 22 n n N13 C14 69Z sing 23 n n C16 C14 69Z sing 24 n n C16 S24 69Z sing 25 n y C14 O15 69Z doub 26 n n C3 H1 69Z sing 27 n n C4 H2 69Z sing 28 n n C6 H3 69Z sing 29 n n C7 H4 69Z sing 30 n n C8 H5 69Z sing 31 n n C11 H6 69Z sing 32 n n C11 H7 69Z sing 33 n n C12 H8 69Z sing 34 n n C12 H9 69Z sing 35 n n C23 H10 69Z sing 36 n n C23 H11 69Z sing 37 n n C23 H12 69Z sing 38 n n C10 H13 69Z sing 39 n n C10 H14 69Z sing 40 n n C20 H15 69Z sing 41 n n # _atom_sites.entry_id 5ICP _atom_sites.fract_transf_matrix[1][1] 0.014207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 69Z A 1 401 1 69Z INX . D 4 EDO A 1 402 1 EDO EDO . E 4 EDO A 1 403 2 EDO EDO . F 4 EDO A 1 404 3 EDO EDO . G 5 FMT A 1 405 10 FMT FMT . H 5 FMT A 1 406 11 FMT FMT . I 5 FMT A 1 407 12 FMT FMT . J 5 FMT B 1 301 4 FMT FMT . K 5 FMT B 1 302 5 FMT FMT . L 5 FMT B 1 303 6 FMT FMT . M 5 FMT B 1 304 7 FMT FMT . N 5 FMT B 1 305 8 FMT FMT . O 5 FMT B 1 306 9 FMT FMT . P 6 HOH A 1 501 23 HOH HOH . P 6 HOH A 2 502 14 HOH HOH . P 6 HOH A 3 503 217 HOH HOH . P 6 HOH A 4 504 97 HOH HOH . P 6 HOH A 5 505 43 HOH HOH . P 6 HOH A 6 506 148 HOH HOH . P 6 HOH A 7 507 183 HOH HOH . P 6 HOH A 8 508 155 HOH HOH . P 6 HOH A 9 509 122 HOH HOH . P 6 HOH A 10 510 27 HOH HOH . P 6 HOH A 11 511 15 HOH HOH . P 6 HOH A 12 512 89 HOH HOH . P 6 HOH A 13 513 138 HOH HOH . P 6 HOH A 14 514 159 HOH HOH . P 6 HOH A 15 515 209 HOH HOH . P 6 HOH A 16 516 1 HOH HOH . P 6 HOH A 17 517 54 HOH HOH . P 6 HOH A 18 518 91 HOH HOH . P 6 HOH A 19 519 51 HOH HOH . P 6 HOH A 20 520 86 HOH HOH . P 6 HOH A 21 521 123 HOH HOH . P 6 HOH A 22 522 207 HOH HOH . P 6 HOH A 23 523 93 HOH HOH . P 6 HOH A 24 524 68 HOH HOH . P 6 HOH A 25 525 18 HOH HOH . P 6 HOH A 26 526 50 HOH HOH . P 6 HOH A 27 527 16 HOH HOH . P 6 HOH A 28 528 77 HOH HOH . P 6 HOH A 29 529 78 HOH HOH . P 6 HOH A 30 530 109 HOH HOH . P 6 HOH A 31 531 26 HOH HOH . P 6 HOH A 32 532 3 HOH HOH . P 6 HOH A 33 533 24 HOH HOH . P 6 HOH A 34 534 127 HOH HOH . P 6 HOH A 35 535 42 HOH HOH . P 6 HOH A 36 536 188 HOH HOH . P 6 HOH A 37 537 201 HOH HOH . P 6 HOH A 38 538 28 HOH HOH . P 6 HOH A 39 539 32 HOH HOH . P 6 HOH A 40 540 160 HOH HOH . P 6 HOH A 41 541 169 HOH HOH . P 6 HOH A 42 542 79 HOH HOH . P 6 HOH A 43 543 5 HOH HOH . P 6 HOH A 44 544 213 HOH HOH . P 6 HOH A 45 545 196 HOH HOH . P 6 HOH A 46 546 40 HOH HOH . P 6 HOH A 47 547 126 HOH HOH . P 6 HOH A 48 548 108 HOH HOH . P 6 HOH A 49 549 96 HOH HOH . P 6 HOH A 50 550 4 HOH HOH . P 6 HOH A 51 551 55 HOH HOH . P 6 HOH A 52 552 17 HOH HOH . P 6 HOH A 53 553 19 HOH HOH . P 6 HOH A 54 554 83 HOH HOH . P 6 HOH A 55 555 107 HOH HOH . P 6 HOH A 56 556 106 HOH HOH . P 6 HOH A 57 557 36 HOH HOH . P 6 HOH A 58 558 121 HOH HOH . P 6 HOH A 59 559 162 HOH HOH . P 6 HOH A 60 560 47 HOH HOH . P 6 HOH A 61 561 98 HOH HOH . P 6 HOH A 62 562 101 HOH HOH . P 6 HOH A 63 563 195 HOH HOH . P 6 HOH A 64 564 110 HOH HOH . P 6 HOH A 65 565 219 HOH HOH . P 6 HOH A 66 566 80 HOH HOH . P 6 HOH A 67 567 210 HOH HOH . P 6 HOH A 68 568 12 HOH HOH . P 6 HOH A 69 569 2 HOH HOH . P 6 HOH A 70 570 35 HOH HOH . P 6 HOH A 71 571 135 HOH HOH . P 6 HOH A 72 572 49 HOH HOH . P 6 HOH A 73 573 88 HOH HOH . P 6 HOH A 74 574 34 HOH HOH . P 6 HOH A 75 575 99 HOH HOH . P 6 HOH A 76 576 46 HOH HOH . P 6 HOH A 77 577 81 HOH HOH . P 6 HOH A 78 578 31 HOH HOH . P 6 HOH A 79 579 115 HOH HOH . P 6 HOH A 80 580 25 HOH HOH . P 6 HOH A 81 581 211 HOH HOH . P 6 HOH A 82 582 30 HOH HOH . P 6 HOH A 83 583 100 HOH HOH . P 6 HOH A 84 584 22 HOH HOH . P 6 HOH A 85 585 38 HOH HOH . P 6 HOH A 86 586 124 HOH HOH . P 6 HOH A 87 587 29 HOH HOH . P 6 HOH A 88 588 111 HOH HOH . P 6 HOH A 89 589 120 HOH HOH . P 6 HOH A 90 590 45 HOH HOH . P 6 HOH A 91 591 116 HOH HOH . P 6 HOH A 92 592 119 HOH HOH . P 6 HOH A 93 593 184 HOH HOH . P 6 HOH A 94 594 85 HOH HOH . P 6 HOH A 95 595 44 HOH HOH . P 6 HOH A 96 596 154 HOH HOH . P 6 HOH A 97 597 92 HOH HOH . P 6 HOH A 98 598 37 HOH HOH . P 6 HOH A 99 599 87 HOH HOH . P 6 HOH A 100 600 158 HOH HOH . P 6 HOH A 101 601 41 HOH HOH . P 6 HOH A 102 602 21 HOH HOH . P 6 HOH A 103 603 176 HOH HOH . P 6 HOH A 104 604 20 HOH HOH . P 6 HOH A 105 605 103 HOH HOH . P 6 HOH A 106 606 166 HOH HOH . P 6 HOH A 107 607 198 HOH HOH . P 6 HOH A 108 608 82 HOH HOH . P 6 HOH A 109 609 102 HOH HOH . P 6 HOH A 110 610 218 HOH HOH . P 6 HOH A 111 611 224 HOH HOH . P 6 HOH A 112 612 105 HOH HOH . P 6 HOH A 113 613 153 HOH HOH . P 6 HOH A 114 614 39 HOH HOH . P 6 HOH A 115 615 149 HOH HOH . P 6 HOH A 116 616 173 HOH HOH . P 6 HOH A 117 617 205 HOH HOH . P 6 HOH A 118 618 125 HOH HOH . P 6 HOH A 119 619 200 HOH HOH . P 6 HOH A 120 620 177 HOH HOH . P 6 HOH A 121 621 221 HOH HOH . P 6 HOH A 122 622 156 HOH HOH . P 6 HOH A 123 623 171 HOH HOH . P 6 HOH A 124 624 172 HOH HOH . P 6 HOH A 125 625 84 HOH HOH . P 6 HOH A 126 626 139 HOH HOH . P 6 HOH A 127 627 168 HOH HOH . P 6 HOH A 128 628 53 HOH HOH . P 6 HOH A 129 629 222 HOH HOH . P 6 HOH A 130 630 170 HOH HOH . P 6 HOH A 131 631 164 HOH HOH . P 6 HOH A 132 632 214 HOH HOH . P 6 HOH A 133 633 223 HOH HOH . P 6 HOH A 134 634 128 HOH HOH . P 6 HOH A 135 635 33 HOH HOH . P 6 HOH A 136 636 141 HOH HOH . P 6 HOH A 137 637 94 HOH HOH . P 6 HOH A 138 638 167 HOH HOH . P 6 HOH A 139 639 104 HOH HOH . P 6 HOH A 140 640 165 HOH HOH . P 6 HOH A 141 641 90 HOH HOH . P 6 HOH A 142 642 216 HOH HOH . P 6 HOH A 143 643 174 HOH HOH . Q 6 HOH B 1 401 199 HOH HOH . Q 6 HOH B 2 402 157 HOH HOH . Q 6 HOH B 3 403 8 HOH HOH . Q 6 HOH B 4 404 163 HOH HOH . Q 6 HOH B 5 405 75 HOH HOH . Q 6 HOH B 6 406 70 HOH HOH . Q 6 HOH B 7 407 191 HOH HOH . Q 6 HOH B 8 408 72 HOH HOH . Q 6 HOH B 9 409 58 HOH HOH . Q 6 HOH B 10 410 151 HOH HOH . Q 6 HOH B 11 411 197 HOH HOH . Q 6 HOH B 12 412 113 HOH HOH . Q 6 HOH B 13 413 10 HOH HOH . Q 6 HOH B 14 414 61 HOH HOH . Q 6 HOH B 15 415 152 HOH HOH . Q 6 HOH B 16 416 204 HOH HOH . Q 6 HOH B 17 417 7 HOH HOH . Q 6 HOH B 18 418 136 HOH HOH . Q 6 HOH B 19 419 203 HOH HOH . Q 6 HOH B 20 420 52 HOH HOH . Q 6 HOH B 21 421 95 HOH HOH . Q 6 HOH B 22 422 73 HOH HOH . Q 6 HOH B 23 423 63 HOH HOH . Q 6 HOH B 24 424 132 HOH HOH . Q 6 HOH B 25 425 9 HOH HOH . Q 6 HOH B 26 426 142 HOH HOH . Q 6 HOH B 27 427 6 HOH HOH . Q 6 HOH B 28 428 48 HOH HOH . Q 6 HOH B 29 429 137 HOH HOH . Q 6 HOH B 30 430 71 HOH HOH . Q 6 HOH B 31 431 65 HOH HOH . Q 6 HOH B 32 432 129 HOH HOH . Q 6 HOH B 33 433 66 HOH HOH . Q 6 HOH B 34 434 60 HOH HOH . Q 6 HOH B 35 435 64 HOH HOH . Q 6 HOH B 36 436 74 HOH HOH . Q 6 HOH B 37 437 178 HOH HOH . Q 6 HOH B 38 438 131 HOH HOH . Q 6 HOH B 39 439 190 HOH HOH . Q 6 HOH B 40 440 57 HOH HOH . Q 6 HOH B 41 441 150 HOH HOH . Q 6 HOH B 42 442 112 HOH HOH . Q 6 HOH B 43 443 59 HOH HOH . Q 6 HOH B 44 444 56 HOH HOH . Q 6 HOH B 45 445 114 HOH HOH . Q 6 HOH B 46 446 11 HOH HOH . Q 6 HOH B 47 447 117 HOH HOH . Q 6 HOH B 48 448 182 HOH HOH . Q 6 HOH B 49 449 220 HOH HOH . Q 6 HOH B 50 450 145 HOH HOH . Q 6 HOH B 51 451 189 HOH HOH . Q 6 HOH B 52 452 62 HOH HOH . Q 6 HOH B 53 453 69 HOH HOH . Q 6 HOH B 54 454 161 HOH HOH . Q 6 HOH B 55 455 187 HOH HOH . Q 6 HOH B 56 456 133 HOH HOH . Q 6 HOH B 57 457 194 HOH HOH . Q 6 HOH B 58 458 144 HOH HOH . Q 6 HOH B 59 459 215 HOH HOH . Q 6 HOH B 60 460 208 HOH HOH . Q 6 HOH B 61 461 206 HOH HOH . Q 6 HOH B 62 462 175 HOH HOH . Q 6 HOH B 63 463 181 HOH HOH . Q 6 HOH B 64 464 134 HOH HOH . Q 6 HOH B 65 465 192 HOH HOH . Q 6 HOH B 66 466 146 HOH HOH . Q 6 HOH B 67 467 179 HOH HOH . Q 6 HOH B 68 468 212 HOH HOH . Q 6 HOH B 69 469 202 HOH HOH . Q 6 HOH B 70 470 180 HOH HOH . Q 6 HOH B 71 471 76 HOH HOH . Q 6 HOH B 72 472 185 HOH HOH . Q 6 HOH B 73 473 193 HOH HOH . Q 6 HOH B 74 474 147 HOH HOH . Q 6 HOH B 75 475 130 HOH HOH . Q 6 HOH B 76 476 186 HOH HOH . Q 6 HOH B 77 477 67 HOH HOH . Q 6 HOH B 78 478 118 HOH HOH . Q 6 HOH B 79 479 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 69Z . . . C 3 4.759 12.454 6.531 1 59.23 ? C2 69Z 401 A 1 HETATM 2 C C3 69Z . . . C 3 5.254 13.462 7.352 1 51.98 ? C3 69Z 401 A 1 HETATM 3 C C4 69Z . . . C 3 5.02 13.441 8.72 1 53.92 ? C4 69Z 401 A 1 HETATM 4 C C5 69Z . . . C 3 4.286 12.398 9.285 1 54.78 ? C5 69Z 401 A 1 HETATM 5 C C6 69Z . . . C 3 3.793 11.394 8.458 1 52.42 ? C6 69Z 401 A 1 HETATM 6 C C7 69Z . . . C 3 4.024 11.417 7.091 1 50.21 ? C7 69Z 401 A 1 HETATM 7 C C8 69Z . . . C 3 4 12.302 10.772 1 52.74 ? C8 69Z 401 A 1 HETATM 8 C C11 69Z . . . C 3 2.762 14.297 11.199 1 52.3 ? C11 69Z 401 A 1 HETATM 9 C C12 69Z . . . C 3 4.103 14.364 11.977 1 55.11 ? C12 69Z 401 A 1 HETATM 10 N N13 69Z . . . C 3 4.872 13.151 11.621 1 50.03 ? N13 69Z 401 A 1 HETATM 11 C C16 69Z . . . C 3 6.844 11.677 11.635 1 51.26 ? C16 69Z 401 A 1 HETATM 12 C C19 69Z . . . C 3 8.106 9.562 11.322 1 47.78 ? C19 69Z 401 A 1 HETATM 13 C C23 69Z . . . C 3 7.421 9.378 7.718 1 44.37 ? C23 69Z 401 A 1 HETATM 14 CL CL1 69Z . . . C 3 5.046 12.481 4.816 1 67.32 ? CL1 69Z 401 A 1 HETATM 15 C C10 69Z . . . C 3 2.556 12.767 11.048 1 58.63 ? C10 69Z 401 A 1 HETATM 16 C C14 69Z . . . C 3 6.143 12.91 12.038 1 52.74 ? C14 69Z 401 A 1 HETATM 17 O O15 69Z . . . C 3 6.709 13.714 12.75 1 63.91 ? O15 69Z 401 A 1 HETATM 18 N N17 69Z . . . C 3 6.869 11.244 10.426 1 44.7 ? N17 69Z 401 A 1 HETATM 19 N N18 69Z . . . C 3 7.543 10.069 10.188 1 44.51 ? N18 69Z 401 A 1 HETATM 20 C C20 69Z . . . C 3 8.733 8.418 10.959 1 51.18 ? C20 69Z 401 A 1 HETATM 21 N N21 69Z . . . C 3 8.547 8.224 9.641 1 46.44 ? N21 69Z 401 A 1 HETATM 22 C C22 69Z . . . C 3 7.847 9.211 9.158 1 50.94 ? C22 69Z 401 A 1 HETATM 23 S S24 69Z . . . C 3 7.759 10.614 12.697 1 46.57 ? S24 69Z 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #