data_5ID2
#
_model_server_result.job_id            1zv6aIV9Le1u9AJcUnRFJg 
_model_server_result.datetime_utc      '2024-11-18 09:33:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5id2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":202}' 
#
_entry.id    5ID2 
#
_exptl.entry_id    5ID2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ID2 
_cell.length_a            146.906 
_cell.length_b            146.906 
_cell.length_c            33.616 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ID2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        77 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I 1 1 
C,D,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 55 A ILE 44 1_555 A N CSO 56 A CSO 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CSO 56 A CSO 45 1_555 A N GLN 57 A GLN 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 D C ILE 55 D ILE 44 1_555 D N CSO 56 D CSO 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 D C CSO 56 D CSO 45 1_555 D N GLN 57 D GLN 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     5ID2 
_atom_sites.fract_transf_matrix[1][1]    0.006807 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 201 1 GOL GOL . 
F 4 ACT B 1 201 1 ACT ACT . 
G 3 GOL B 1 202 1 GOL GOL . 
H 5 HOH A 1 301 79 HOH HOH . 
H 5 HOH A 2 302 43 HOH HOH . 
H 5 HOH A 3 303 221 HOH HOH . 
H 5 HOH A 4 304 95 HOH HOH . 
H 5 HOH A 5 305 62 HOH HOH . 
H 5 HOH A 6 306 111 HOH HOH . 
H 5 HOH A 7 307 213 HOH HOH . 
H 5 HOH A 8 308 212 HOH HOH . 
H 5 HOH A 9 309 109 HOH HOH . 
H 5 HOH A 10 310 132 HOH HOH . 
H 5 HOH A 11 311 68 HOH HOH . 
H 5 HOH A 12 312 114 HOH HOH . 
H 5 HOH A 13 313 41 HOH HOH . 
H 5 HOH A 14 314 124 HOH HOH . 
H 5 HOH A 15 315 84 HOH HOH . 
H 5 HOH A 16 316 191 HOH HOH . 
H 5 HOH A 17 317 80 HOH HOH . 
H 5 HOH A 18 318 163 HOH HOH . 
H 5 HOH A 19 319 215 HOH HOH . 
H 5 HOH A 20 320 39 HOH HOH . 
H 5 HOH A 21 321 73 HOH HOH . 
H 5 HOH A 22 322 63 HOH HOH . 
H 5 HOH A 23 323 133 HOH HOH . 
H 5 HOH A 24 324 181 HOH HOH . 
H 5 HOH A 25 325 101 HOH HOH . 
H 5 HOH A 26 326 51 HOH HOH . 
H 5 HOH A 27 327 46 HOH HOH . 
H 5 HOH A 28 328 152 HOH HOH . 
H 5 HOH A 29 329 143 HOH HOH . 
H 5 HOH A 30 330 97 HOH HOH . 
H 5 HOH A 31 331 85 HOH HOH . 
H 5 HOH A 32 332 66 HOH HOH . 
H 5 HOH A 33 333 82 HOH HOH . 
H 5 HOH A 34 334 166 HOH HOH . 
H 5 HOH A 35 335 226 HOH HOH . 
H 5 HOH A 36 336 70 HOH HOH . 
H 5 HOH A 37 337 83 HOH HOH . 
H 5 HOH A 38 338 214 HOH HOH . 
H 5 HOH A 39 339 147 HOH HOH . 
H 5 HOH A 40 340 171 HOH HOH . 
H 5 HOH A 41 341 64 HOH HOH . 
H 5 HOH A 42 342 47 HOH HOH . 
H 5 HOH A 43 343 145 HOH HOH . 
H 5 HOH A 44 344 156 HOH HOH . 
H 5 HOH A 45 345 81 HOH HOH . 
H 5 HOH A 46 346 228 HOH HOH . 
H 5 HOH A 47 347 231 HOH HOH . 
H 5 HOH A 48 348 115 HOH HOH . 
H 5 HOH A 49 349 172 HOH HOH . 
H 5 HOH A 50 350 42 HOH HOH . 
H 5 HOH A 51 351 151 HOH HOH . 
H 5 HOH A 52 352 167 HOH HOH . 
H 5 HOH A 53 353 184 HOH HOH . 
I 5 HOH B 1 301 116 HOH HOH . 
I 5 HOH B 2 302 19 HOH HOH . 
I 5 HOH B 3 303 5 HOH HOH . 
I 5 HOH B 4 304 194 HOH HOH . 
I 5 HOH B 5 305 190 HOH HOH . 
I 5 HOH B 6 306 107 HOH HOH . 
I 5 HOH B 7 307 48 HOH HOH . 
I 5 HOH B 8 308 137 HOH HOH . 
I 5 HOH B 9 309 2 HOH HOH . 
I 5 HOH B 10 310 183 HOH HOH . 
I 5 HOH B 11 311 207 HOH HOH . 
I 5 HOH B 12 312 119 HOH HOH . 
I 5 HOH B 13 313 21 HOH HOH . 
I 5 HOH B 14 314 117 HOH HOH . 
I 5 HOH B 15 315 182 HOH HOH . 
I 5 HOH B 16 316 12 HOH HOH . 
I 5 HOH B 17 317 94 HOH HOH . 
I 5 HOH B 18 318 105 HOH HOH . 
I 5 HOH B 19 319 44 HOH HOH . 
I 5 HOH B 20 320 229 HOH HOH . 
I 5 HOH B 21 321 10 HOH HOH . 
I 5 HOH B 22 322 201 HOH HOH . 
I 5 HOH B 23 323 227 HOH HOH . 
I 5 HOH B 24 324 123 HOH HOH . 
I 5 HOH B 25 325 196 HOH HOH . 
I 5 HOH B 26 326 20 HOH HOH . 
I 5 HOH B 27 327 157 HOH HOH . 
I 5 HOH B 28 328 87 HOH HOH . 
I 5 HOH B 29 329 96 HOH HOH . 
I 5 HOH B 30 330 131 HOH HOH . 
I 5 HOH B 31 331 185 HOH HOH . 
I 5 HOH B 32 332 8 HOH HOH . 
I 5 HOH B 33 333 178 HOH HOH . 
I 5 HOH B 34 334 3 HOH HOH . 
I 5 HOH B 35 335 4 HOH HOH . 
I 5 HOH B 36 336 7 HOH HOH . 
I 5 HOH B 37 337 127 HOH HOH . 
I 5 HOH B 38 338 6 HOH HOH . 
I 5 HOH B 39 339 129 HOH HOH . 
I 5 HOH B 40 340 18 HOH HOH . 
I 5 HOH B 41 341 204 HOH HOH . 
I 5 HOH B 42 342 200 HOH HOH . 
I 5 HOH B 43 343 206 HOH HOH . 
I 5 HOH B 44 344 211 HOH HOH . 
I 5 HOH B 45 345 9 HOH HOH . 
I 5 HOH B 46 346 50 HOH HOH . 
I 5 HOH B 47 347 203 HOH HOH . 
I 5 HOH B 48 348 177 HOH HOH . 
I 5 HOH B 49 349 161 HOH HOH . 
I 5 HOH B 50 350 197 HOH HOH . 
I 5 HOH B 51 351 49 HOH HOH . 
I 5 HOH B 52 352 23 HOH HOH . 
I 5 HOH B 53 353 193 HOH HOH . 
I 5 HOH B 54 354 24 HOH HOH . 
I 5 HOH B 55 355 86 HOH HOH . 
I 5 HOH B 56 356 17 HOH HOH . 
I 5 HOH B 57 357 144 HOH HOH . 
I 5 HOH B 58 358 67 HOH HOH . 
I 5 HOH B 59 359 45 HOH HOH . 
I 5 HOH B 60 360 164 HOH HOH . 
I 5 HOH B 61 361 175 HOH HOH . 
I 5 HOH B 62 362 180 HOH HOH . 
I 5 HOH B 63 363 209 HOH HOH . 
I 5 HOH B 64 364 205 HOH HOH . 
I 5 HOH B 65 365 198 HOH HOH . 
I 5 HOH B 66 366 225 HOH HOH . 
I 5 HOH B 67 367 22 HOH HOH . 
I 5 HOH B 68 368 195 HOH HOH . 
I 5 HOH B 69 369 174 HOH HOH . 
J 5 HOH C 1 201 216 HOH HOH . 
J 5 HOH C 2 202 176 HOH HOH . 
J 5 HOH C 3 203 15 HOH HOH . 
J 5 HOH C 4 204 113 HOH HOH . 
J 5 HOH C 5 205 59 HOH HOH . 
J 5 HOH C 6 206 149 HOH HOH . 
J 5 HOH C 7 207 224 HOH HOH . 
J 5 HOH C 8 208 25 HOH HOH . 
J 5 HOH C 9 209 110 HOH HOH . 
J 5 HOH C 10 210 118 HOH HOH . 
J 5 HOH C 11 211 106 HOH HOH . 
J 5 HOH C 12 212 91 HOH HOH . 
J 5 HOH C 13 213 76 HOH HOH . 
J 5 HOH C 14 214 134 HOH HOH . 
J 5 HOH C 15 215 16 HOH HOH . 
J 5 HOH C 16 216 165 HOH HOH . 
J 5 HOH C 17 217 104 HOH HOH . 
J 5 HOH C 18 218 33 HOH HOH . 
J 5 HOH C 19 219 54 HOH HOH . 
J 5 HOH C 20 220 141 HOH HOH . 
J 5 HOH C 21 221 78 HOH HOH . 
J 5 HOH C 22 222 30 HOH HOH . 
J 5 HOH C 23 223 14 HOH HOH . 
J 5 HOH C 24 224 77 HOH HOH . 
J 5 HOH C 25 225 102 HOH HOH . 
J 5 HOH C 26 226 71 HOH HOH . 
J 5 HOH C 27 227 170 HOH HOH . 
J 5 HOH C 28 228 13 HOH HOH . 
J 5 HOH C 29 229 60 HOH HOH . 
J 5 HOH C 30 230 58 HOH HOH . 
J 5 HOH C 31 231 35 HOH HOH . 
J 5 HOH C 32 232 168 HOH HOH . 
J 5 HOH C 33 233 188 HOH HOH . 
J 5 HOH C 34 234 61 HOH HOH . 
J 5 HOH C 35 235 53 HOH HOH . 
J 5 HOH C 36 236 162 HOH HOH . 
J 5 HOH C 37 237 160 HOH HOH . 
J 5 HOH C 38 238 72 HOH HOH . 
J 5 HOH C 39 239 154 HOH HOH . 
J 5 HOH C 40 240 223 HOH HOH . 
J 5 HOH C 41 241 55 HOH HOH . 
J 5 HOH C 42 242 57 HOH HOH . 
J 5 HOH C 43 243 179 HOH HOH . 
J 5 HOH C 44 244 142 HOH HOH . 
J 5 HOH C 45 245 52 HOH HOH . 
J 5 HOH C 46 246 56 HOH HOH . 
J 5 HOH C 47 247 90 HOH HOH . 
J 5 HOH C 48 248 222 HOH HOH . 
J 5 HOH C 49 249 32 HOH HOH . 
J 5 HOH C 50 250 34 HOH HOH . 
J 5 HOH C 51 251 98 HOH HOH . 
J 5 HOH C 52 252 136 HOH HOH . 
J 5 HOH C 53 253 69 HOH HOH . 
J 5 HOH C 54 254 122 HOH HOH . 
J 5 HOH C 55 255 217 HOH HOH . 
J 5 HOH C 56 256 99 HOH HOH . 
J 5 HOH C 57 257 93 HOH HOH . 
J 5 HOH C 58 258 65 HOH HOH . 
J 5 HOH C 59 259 153 HOH HOH . 
J 5 HOH C 60 260 31 HOH HOH . 
K 5 HOH D 1 201 169 HOH HOH . 
K 5 HOH D 2 202 121 HOH HOH . 
K 5 HOH D 3 203 112 HOH HOH . 
K 5 HOH D 4 204 140 HOH HOH . 
K 5 HOH D 5 205 28 HOH HOH . 
K 5 HOH D 6 206 126 HOH HOH . 
K 5 HOH D 7 207 26 HOH HOH . 
K 5 HOH D 8 208 146 HOH HOH . 
K 5 HOH D 9 209 36 HOH HOH . 
K 5 HOH D 10 210 74 HOH HOH . 
K 5 HOH D 11 211 130 HOH HOH . 
K 5 HOH D 12 212 150 HOH HOH . 
K 5 HOH D 13 213 103 HOH HOH . 
K 5 HOH D 14 214 210 HOH HOH . 
K 5 HOH D 15 215 27 HOH HOH . 
K 5 HOH D 16 216 38 HOH HOH . 
K 5 HOH D 17 217 100 HOH HOH . 
K 5 HOH D 18 218 218 HOH HOH . 
K 5 HOH D 19 219 29 HOH HOH . 
K 5 HOH D 20 220 40 HOH HOH . 
K 5 HOH D 21 221 199 HOH HOH . 
K 5 HOH D 22 222 148 HOH HOH . 
K 5 HOH D 23 223 1 HOH HOH . 
K 5 HOH D 24 224 125 HOH HOH . 
K 5 HOH D 25 225 92 HOH HOH . 
K 5 HOH D 26 226 202 HOH HOH . 
K 5 HOH D 27 227 138 HOH HOH . 
K 5 HOH D 28 228 120 HOH HOH . 
K 5 HOH D 29 229 192 HOH HOH . 
K 5 HOH D 30 230 155 HOH HOH . 
K 5 HOH D 31 231 75 HOH HOH . 
K 5 HOH D 32 232 11 HOH HOH . 
K 5 HOH D 33 233 37 HOH HOH . 
K 5 HOH D 34 234 135 HOH HOH . 
K 5 HOH D 35 235 208 HOH HOH . 
K 5 HOH D 36 236 108 HOH HOH . 
K 5 HOH D 37 237 230 HOH HOH . 
K 5 HOH D 38 238 219 HOH HOH . 
K 5 HOH D 39 239 189 HOH HOH . 
K 5 HOH D 40 240 159 HOH HOH . 
K 5 HOH D 41 241 158 HOH HOH . 
K 5 HOH D 42 242 173 HOH HOH . 
K 5 HOH D 43 243 187 HOH HOH . 
K 5 HOH D 44 244 186 HOH HOH . 
K 5 HOH D 45 245 128 HOH HOH . 
K 5 HOH D 46 246 89 HOH HOH . 
K 5 HOH D 47 247 220 HOH HOH . 
K 5 HOH D 48 248 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 32.434 17.994 -10.86 1 45.42 ? C1 GOL 202 B 1 
HETATM 2 O O1 GOL . . . G 3 32.292 19.138 -10.018 1 49.08 ? O1 GOL 202 B 1 
HETATM 3 C C2 GOL . . . G 3 33.877 17.994 -11.352 1 45.45 ? C2 GOL 202 B 1 
HETATM 4 O O2 GOL . . . G 3 34.718 18.46 -10.285 1 48.95 ? O2 GOL 202 B 1 
HETATM 5 C C3 GOL . . . G 3 34.319 16.627 -11.891 1 44.42 ? C3 GOL 202 B 1 
HETATM 6 O O3 GOL . . . G 3 33.19 15.839 -12.279 1 43.84 ? O3 GOL 202 B 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#