data_5ID9 # _model_server_result.job_id B3OpSWzjNfDRUoHbqnWwPA _model_server_result.datetime_utc '2024-11-24 08:58:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5id9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 5ID9 # _exptl.entry_id 5ID9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ID9 _cell.length_a 93.86 _cell.length_b 93.86 _cell.length_c 141.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ID9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 139 n n C O2 FMT sing 140 n n C H FMT sing 141 n n O2 HO2 FMT sing 142 n n # _atom_sites.entry_id 5ID9 _atom_sites.fract_transf_matrix[1][1] 0.010654 _atom_sites.fract_transf_matrix[1][2] 0.006151 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6A4 A 1 601 1 6A4 m2c . C 3 MLI A 1 602 1 MLI MLI . D 3 MLI A 1 603 2 MLI MLI . E 3 MLI A 1 604 3 MLI MLI . F 4 FMT A 1 605 4 FMT FMT . G 4 FMT A 1 606 5 FMT FMT . H 4 FMT A 1 607 6 FMT FMT . I 4 FMT A 1 608 7 FMT FMT . J 5 HOH A 1 701 94 HOH HOH . J 5 HOH A 2 702 12 HOH HOH . J 5 HOH A 3 703 6 HOH HOH . J 5 HOH A 4 704 86 HOH HOH . J 5 HOH A 5 705 90 HOH HOH . J 5 HOH A 6 706 4 HOH HOH . J 5 HOH A 7 707 68 HOH HOH . J 5 HOH A 8 708 57 HOH HOH . J 5 HOH A 9 709 22 HOH HOH . J 5 HOH A 10 710 49 HOH HOH . J 5 HOH A 11 711 97 HOH HOH . J 5 HOH A 12 712 39 HOH HOH . J 5 HOH A 13 713 26 HOH HOH . J 5 HOH A 14 714 36 HOH HOH . J 5 HOH A 15 715 67 HOH HOH . J 5 HOH A 16 716 16 HOH HOH . J 5 HOH A 17 717 23 HOH HOH . J 5 HOH A 18 718 73 HOH HOH . J 5 HOH A 19 719 2 HOH HOH . J 5 HOH A 20 720 75 HOH HOH . J 5 HOH A 21 721 58 HOH HOH . J 5 HOH A 22 722 35 HOH HOH . J 5 HOH A 23 723 27 HOH HOH . J 5 HOH A 24 724 54 HOH HOH . J 5 HOH A 25 725 38 HOH HOH . J 5 HOH A 26 726 99 HOH HOH . J 5 HOH A 27 727 92 HOH HOH . J 5 HOH A 28 728 53 HOH HOH . J 5 HOH A 29 729 91 HOH HOH . J 5 HOH A 30 730 21 HOH HOH . J 5 HOH A 31 731 25 HOH HOH . J 5 HOH A 32 732 93 HOH HOH . J 5 HOH A 33 733 70 HOH HOH . J 5 HOH A 34 734 1 HOH HOH . J 5 HOH A 35 735 82 HOH HOH . J 5 HOH A 36 736 10 HOH HOH . J 5 HOH A 37 737 17 HOH HOH . J 5 HOH A 38 738 45 HOH HOH . J 5 HOH A 39 739 24 HOH HOH . J 5 HOH A 40 740 71 HOH HOH . J 5 HOH A 41 741 41 HOH HOH . J 5 HOH A 42 742 29 HOH HOH . J 5 HOH A 43 743 77 HOH HOH . J 5 HOH A 44 744 74 HOH HOH . J 5 HOH A 45 745 88 HOH HOH . J 5 HOH A 46 746 55 HOH HOH . J 5 HOH A 47 747 44 HOH HOH . J 5 HOH A 48 748 11 HOH HOH . J 5 HOH A 49 749 65 HOH HOH . J 5 HOH A 50 750 72 HOH HOH . J 5 HOH A 51 751 14 HOH HOH . J 5 HOH A 52 752 42 HOH HOH . J 5 HOH A 53 753 31 HOH HOH . J 5 HOH A 54 754 79 HOH HOH . J 5 HOH A 55 755 69 HOH HOH . J 5 HOH A 56 756 46 HOH HOH . J 5 HOH A 57 757 59 HOH HOH . J 5 HOH A 58 758 87 HOH HOH . J 5 HOH A 59 759 89 HOH HOH . J 5 HOH A 60 760 8 HOH HOH . J 5 HOH A 61 761 3 HOH HOH . J 5 HOH A 62 762 15 HOH HOH . J 5 HOH A 63 763 5 HOH HOH . J 5 HOH A 64 764 28 HOH HOH . J 5 HOH A 65 765 78 HOH HOH . J 5 HOH A 66 766 30 HOH HOH . J 5 HOH A 67 767 63 HOH HOH . J 5 HOH A 68 768 96 HOH HOH . J 5 HOH A 69 769 48 HOH HOH . J 5 HOH A 70 770 43 HOH HOH . J 5 HOH A 71 771 32 HOH HOH . J 5 HOH A 72 772 19 HOH HOH . J 5 HOH A 73 773 13 HOH HOH . J 5 HOH A 74 774 9 HOH HOH . J 5 HOH A 75 775 34 HOH HOH . J 5 HOH A 76 776 40 HOH HOH . J 5 HOH A 77 777 50 HOH HOH . J 5 HOH A 78 778 83 HOH HOH . J 5 HOH A 79 779 56 HOH HOH . J 5 HOH A 80 780 81 HOH HOH . J 5 HOH A 81 781 66 HOH HOH . J 5 HOH A 82 782 95 HOH HOH . J 5 HOH A 83 783 7 HOH HOH . J 5 HOH A 84 784 61 HOH HOH . J 5 HOH A 85 785 64 HOH HOH . J 5 HOH A 86 786 20 HOH HOH . J 5 HOH A 87 787 51 HOH HOH . J 5 HOH A 88 788 85 HOH HOH . J 5 HOH A 89 789 80 HOH HOH . J 5 HOH A 90 790 33 HOH HOH . J 5 HOH A 91 791 62 HOH HOH . J 5 HOH A 92 792 47 HOH HOH . J 5 HOH A 93 793 84 HOH HOH . J 5 HOH A 94 794 18 HOH HOH . J 5 HOH A 95 795 52 HOH HOH . J 5 HOH A 96 796 37 HOH HOH . J 5 HOH A 97 797 76 HOH HOH . J 5 HOH A 98 798 60 HOH HOH . J 5 HOH A 99 799 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . H 4 55.792 32.812 67.622 1 56.56 ? C FMT 607 A 1 HETATM 2 O O1 FMT . . . H 4 55.889 32.645 68.849 1 52.18 ? O1 FMT 607 A 1 HETATM 3 O O2 FMT . . . H 4 55.464 34.014 67.095 1 54.02 ? O2 FMT 607 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #