data_5IDD # _model_server_result.job_id vNYa8o_dkXrYr-SHU9deuA _model_server_result.datetime_utc '2024-11-16 07:46:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5idd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5IDD # _exptl.entry_id 5IDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.76 _cell.angle_beta 71.99 _cell.angle_gamma 68.33 _cell.entry_id 5IDD _cell.length_a 26.957 _cell.length_b 31.794 _cell.length_c 34.055 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 H PT PT . A PT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 I PT PT . A PT 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc3 A NE2 HIS 15 A HIS 15 1_555 J PT PT . A PT 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 A O TYR 53 A TYR 53 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc5 A O SER 60 A SER 60 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc6 A O ARG 61 A ARG 61 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc7 A O CYS 64 A CYS 64 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc8 A OG SER 72 A SER 72 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc9 A OG SER 91 A SER 91 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 252 n n N O2 NO3 sing 253 n n N O3 NO3 sing 254 n n # _atom_sites.entry_id 5IDD _atom_sites.fract_transf_matrix[1][1] 0.037096 _atom_sites.fract_transf_matrix[1][2] -0.014741 _atom_sites.fract_transf_matrix[1][3] -0.013682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033845 _atom_sites.fract_transf_matrix[2][3] 0.003567 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 201 206 NO3 NO3 . C 2 NO3 A 1 202 207 NO3 NO3 . D 2 NO3 A 1 203 209 NO3 NO3 . E 2 NO3 A 1 204 211 NO3 NO3 . F 2 NO3 A 1 205 212 NO3 NO3 . G 3 NA A 1 206 215 NA NA . H 4 PT A 1 207 1 PT PT . I 4 PT A 1 208 1 PT PT . J 4 PT A 1 209 3 PT PT . K 3 NA A 1 210 1 NA NA . L 5 DMS A 1 211 1 DMS DMS . M 2 NO3 A 1 212 1 NO3 NO3 . N 2 NO3 A 1 213 2 NO3 NO3 . O 6 ACT A 1 214 1 ACT ACT . P 7 HOH A 1 301 304 HOH HOH . P 7 HOH A 2 302 346 HOH HOH . P 7 HOH A 3 303 387 HOH HOH . P 7 HOH A 4 304 392 HOH HOH . P 7 HOH A 5 305 307 HOH HOH . P 7 HOH A 6 306 390 HOH HOH . P 7 HOH A 7 307 313 HOH HOH . P 7 HOH A 8 308 316 HOH HOH . P 7 HOH A 9 309 308 HOH HOH . P 7 HOH A 10 310 311 HOH HOH . P 7 HOH A 11 311 314 HOH HOH . P 7 HOH A 12 312 315 HOH HOH . P 7 HOH A 13 313 382 HOH HOH . P 7 HOH A 14 314 312 HOH HOH . P 7 HOH A 15 315 383 HOH HOH . P 7 HOH A 16 316 381 HOH HOH . P 7 HOH A 17 317 318 HOH HOH . P 7 HOH A 18 318 317 HOH HOH . P 7 HOH A 19 319 378 HOH HOH . P 7 HOH A 20 320 396 HOH HOH . P 7 HOH A 21 321 320 HOH HOH . P 7 HOH A 22 322 321 HOH HOH . P 7 HOH A 23 323 354 HOH HOH . P 7 HOH A 24 324 384 HOH HOH . P 7 HOH A 25 325 322 HOH HOH . P 7 HOH A 26 326 329 HOH HOH . P 7 HOH A 27 327 319 HOH HOH . P 7 HOH A 28 328 324 HOH HOH . P 7 HOH A 29 329 323 HOH HOH . P 7 HOH A 30 330 325 HOH HOH . P 7 HOH A 31 331 334 HOH HOH . P 7 HOH A 32 332 398 HOH HOH . P 7 HOH A 33 333 379 HOH HOH . P 7 HOH A 34 334 389 HOH HOH . P 7 HOH A 35 335 330 HOH HOH . P 7 HOH A 36 336 385 HOH HOH . P 7 HOH A 37 337 388 HOH HOH . P 7 HOH A 38 338 386 HOH HOH . P 7 HOH A 39 339 342 HOH HOH . P 7 HOH A 40 340 336 HOH HOH . P 7 HOH A 41 341 335 HOH HOH . P 7 HOH A 42 342 326 HOH HOH . P 7 HOH A 43 343 328 HOH HOH . P 7 HOH A 44 344 333 HOH HOH . P 7 HOH A 45 345 339 HOH HOH . P 7 HOH A 46 346 338 HOH HOH . P 7 HOH A 47 347 345 HOH HOH . P 7 HOH A 48 348 337 HOH HOH . P 7 HOH A 49 349 343 HOH HOH . P 7 HOH A 50 350 340 HOH HOH . P 7 HOH A 51 351 393 HOH HOH . P 7 HOH A 52 352 352 HOH HOH . P 7 HOH A 53 353 353 HOH HOH . P 7 HOH A 54 354 348 HOH HOH . P 7 HOH A 55 355 349 HOH HOH . P 7 HOH A 56 356 350 HOH HOH . P 7 HOH A 57 357 344 HOH HOH . P 7 HOH A 58 358 364 HOH HOH . P 7 HOH A 59 359 356 HOH HOH . P 7 HOH A 60 360 391 HOH HOH . P 7 HOH A 61 361 355 HOH HOH . P 7 HOH A 62 362 357 HOH HOH . P 7 HOH A 63 363 358 HOH HOH . P 7 HOH A 64 364 360 HOH HOH . P 7 HOH A 65 365 366 HOH HOH . P 7 HOH A 66 366 361 HOH HOH . P 7 HOH A 67 367 363 HOH HOH . P 7 HOH A 68 368 341 HOH HOH . P 7 HOH A 69 369 367 HOH HOH . P 7 HOH A 70 370 369 HOH HOH . P 7 HOH A 71 371 370 HOH HOH . P 7 HOH A 72 372 371 HOH HOH . P 7 HOH A 73 373 1 HOH HOH . P 7 HOH A 74 374 380 HOH HOH . P 7 HOH A 75 375 374 HOH HOH . P 7 HOH A 76 376 376 HOH HOH . P 7 HOH A 77 377 375 HOH HOH . P 7 HOH A 78 378 327 HOH HOH . P 7 HOH A 79 379 377 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . F 2 -21.128 -26.583 -10.607 0.92 39.3 ? N NO3 205 A 1 HETATM 2 O O1 NO3 . . . F 2 -19.94 -26.384 -10.511 0.92 52.27 ? O1 NO3 205 A 1 HETATM 3 O O2 NO3 . . . F 2 -21.644 -27.483 -11.544 0.92 39.64 ? O2 NO3 205 A 1 HETATM 4 O O3 NO3 . . . F 2 -21.967 -25.843 -9.808 0.92 28.79 ? O3 NO3 205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #