data_5IDP # _model_server_result.job_id VFTO4MuWU5biDAQDhu72CQ _model_server_result.datetime_utc '2024-10-19 16:33:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5idp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5IDP # _exptl.entry_id 5IDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.379 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3-amino-1H-indazol-5-yl)[(2S)-2-(4-fluorophenyl)piperidin-1-yl]methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IDP _cell.length_a 71.113 _cell.length_b 71.093 _cell.length_c 172.335 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 F N4 O' _chem_comp.formula_weight 338.379 _chem_comp.id 6A6 _chem_comp.mon_nstd_flag . _chem_comp.name (3-amino-1H-indazol-5-yl)[(2S)-2-(4-fluorophenyl)piperidin-1-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C2 6A6 sing 1 n n C2 C3 6A6 doub 2 n y C2 C7 6A6 sing 3 n y C3 C4 6A6 sing 4 n y C7 C6 6A6 doub 5 n y C4 C5 6A6 doub 6 n y N26 C25 6A6 sing 7 n n C6 C5 6A6 sing 8 n y C5 C8 6A6 sing 9 n n C25 N24 6A6 doub 10 n y C25 C19 6A6 sing 11 n y N24 N23 6A6 sing 12 n y C8 N14 6A6 sing 13 n n C8 C10 6A6 sing 14 n n C18 C19 6A6 doub 15 n y C18 C17 6A6 sing 16 n y C19 C20 6A6 sing 17 n y C13 N14 6A6 sing 18 n n C13 C12 6A6 sing 19 n n N14 C15 6A6 sing 20 n n C10 C11 6A6 sing 21 n n N23 C20 6A6 sing 22 n y C15 C17 6A6 sing 23 n n C15 O16 6A6 doub 24 n n C12 C11 6A6 sing 25 n n C17 C22 6A6 doub 26 n y C20 C21 6A6 doub 27 n y C22 C21 6A6 sing 28 n y C3 H1 6A6 sing 29 n n C4 H2 6A6 sing 30 n n C6 H3 6A6 sing 31 n n C7 H4 6A6 sing 32 n n C8 H5 6A6 sing 33 n n C11 H6 6A6 sing 34 n n C11 H7 6A6 sing 35 n n C12 H8 6A6 sing 36 n n C12 H9 6A6 sing 37 n n C18 H10 6A6 sing 38 n n C21 H11 6A6 sing 39 n n C10 H12 6A6 sing 40 n n C10 H13 6A6 sing 41 n n C13 H14 6A6 sing 42 n n C13 H15 6A6 sing 43 n n C22 H16 6A6 sing 44 n n N23 H17 6A6 sing 45 n n N26 H18 6A6 sing 46 n n N26 H19 6A6 sing 47 n n # _atom_sites.entry_id 5IDP _atom_sites.fract_transf_matrix[1][1] 0.014062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 6A6 A 1 401 1 6A6 INX . D 4 FMT A 1 402 1 FMT FMT . E 4 FMT A 1 403 2 FMT FMT . F 4 FMT B 1 301 3 FMT FMT . G 4 FMT B 1 302 4 FMT FMT . H 4 FMT B 1 303 5 FMT FMT . I 5 HOH A 1 501 56 HOH HOH . I 5 HOH A 2 502 28 HOH HOH . I 5 HOH A 3 503 64 HOH HOH . I 5 HOH A 4 504 3 HOH HOH . I 5 HOH A 5 505 9 HOH HOH . I 5 HOH A 6 506 10 HOH HOH . I 5 HOH A 7 507 48 HOH HOH . I 5 HOH A 8 508 41 HOH HOH . I 5 HOH A 9 509 61 HOH HOH . I 5 HOH A 10 510 46 HOH HOH . I 5 HOH A 11 511 63 HOH HOH . I 5 HOH A 12 512 25 HOH HOH . I 5 HOH A 13 513 45 HOH HOH . I 5 HOH A 14 514 29 HOH HOH . I 5 HOH A 15 515 31 HOH HOH . I 5 HOH A 16 516 44 HOH HOH . I 5 HOH A 17 517 40 HOH HOH . I 5 HOH A 18 518 11 HOH HOH . I 5 HOH A 19 519 43 HOH HOH . I 5 HOH A 20 520 24 HOH HOH . I 5 HOH A 21 521 57 HOH HOH . I 5 HOH A 22 522 13 HOH HOH . I 5 HOH A 23 523 27 HOH HOH . I 5 HOH A 24 524 62 HOH HOH . I 5 HOH A 25 525 1 HOH HOH . I 5 HOH A 26 526 23 HOH HOH . I 5 HOH A 27 527 26 HOH HOH . I 5 HOH A 28 528 59 HOH HOH . I 5 HOH A 29 529 60 HOH HOH . I 5 HOH A 30 530 7 HOH HOH . I 5 HOH A 31 531 42 HOH HOH . I 5 HOH A 32 532 58 HOH HOH . I 5 HOH A 33 533 18 HOH HOH . I 5 HOH A 34 534 15 HOH HOH . I 5 HOH A 35 535 20 HOH HOH . I 5 HOH A 36 536 14 HOH HOH . I 5 HOH A 37 537 38 HOH HOH . I 5 HOH A 38 538 39 HOH HOH . I 5 HOH A 39 539 2 HOH HOH . I 5 HOH A 40 540 54 HOH HOH . I 5 HOH A 41 541 16 HOH HOH . I 5 HOH A 42 542 12 HOH HOH . I 5 HOH A 43 543 66 HOH HOH . J 5 HOH B 1 401 34 HOH HOH . J 5 HOH B 2 402 30 HOH HOH . J 5 HOH B 3 403 49 HOH HOH . J 5 HOH B 4 404 55 HOH HOH . J 5 HOH B 5 405 51 HOH HOH . J 5 HOH B 6 406 53 HOH HOH . J 5 HOH B 7 407 5 HOH HOH . J 5 HOH B 8 408 4 HOH HOH . J 5 HOH B 9 409 6 HOH HOH . J 5 HOH B 10 410 47 HOH HOH . J 5 HOH B 11 411 19 HOH HOH . J 5 HOH B 12 412 36 HOH HOH . J 5 HOH B 13 413 33 HOH HOH . J 5 HOH B 14 414 35 HOH HOH . J 5 HOH B 15 415 17 HOH HOH . J 5 HOH B 16 416 50 HOH HOH . J 5 HOH B 17 417 22 HOH HOH . J 5 HOH B 18 418 8 HOH HOH . J 5 HOH B 19 419 37 HOH HOH . J 5 HOH B 20 420 32 HOH HOH . J 5 HOH B 21 421 21 HOH HOH . J 5 HOH B 22 422 65 HOH HOH . J 5 HOH B 23 423 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6A6 . . . C 3 -3.121 -12.853 6.303 1 72.61 ? C2 6A6 401 A 1 HETATM 2 C C3 6A6 . . . C 3 -4.111 -13.598 6.936 1 72.79 ? C3 6A6 401 A 1 HETATM 3 C C4 6A6 . . . C 3 -4.228 -13.591 8.323 1 62.5 ? C4 6A6 401 A 1 HETATM 4 C C5 6A6 . . . C 3 -3.35 -12.841 9.103 1 63.05 ? C5 6A6 401 A 1 HETATM 5 C C6 6A6 . . . C 3 -2.367 -12.086 8.444 1 66.56 ? C6 6A6 401 A 1 HETATM 6 C C7 6A6 . . . C 3 -2.245 -12.097 7.064 1 69.1 ? C7 6A6 401 A 1 HETATM 7 C C8 6A6 . . . C 3 -3.466 -12.811 10.63 1 59.39 ? C8 6A6 401 A 1 HETATM 8 C C11 6A6 . . . C 3 -1.926 -13.687 12.396 1 59 ? C11 6A6 401 A 1 HETATM 9 C C12 6A6 . . . C 3 -2.091 -15.115 11.878 1 56.99 ? C12 6A6 401 A 1 HETATM 10 C C15 6A6 . . . C 3 -5.439 -13.904 11.854 1 48.12 ? C15 6A6 401 A 1 HETATM 11 C C17 6A6 . . . C 3 -6.239 -12.654 11.939 1 52.46 ? C17 6A6 401 A 1 HETATM 12 C C18 6A6 . . . C 3 -6.415 -11.901 10.781 1 48.66 ? C18 6A6 401 A 1 HETATM 13 C C19 6A6 . . . C 3 -7.131 -10.722 10.803 1 47.61 ? C19 6A6 401 A 1 HETATM 14 C C21 6A6 . . . C 3 -7.572 -11.046 13.166 1 50.87 ? C21 6A6 401 A 1 HETATM 15 F F1 6A6 . . . C 3 -3.003 -12.861 4.959 1 70.78 ? F1 6A6 401 A 1 HETATM 16 C C10 6A6 . . . C 3 -2.062 -12.711 11.258 1 57.48 ? C10 6A6 401 A 1 HETATM 17 C C13 6A6 . . . C 3 -3.459 -15.263 11.201 1 54.12 ? C13 6A6 401 A 1 HETATM 18 N N14 6A6 . . . C 3 -4.198 -13.974 11.245 1 47.23 ? N14 6A6 401 A 1 HETATM 19 O O16 6A6 . . . C 3 -5.945 -14.896 12.353 1 45.22 ? O16 6A6 401 A 1 HETATM 20 C C20 6A6 . . . C 3 -7.726 -10.274 12 1 51.82 ? C20 6A6 401 A 1 HETATM 21 C C22 6A6 . . . C 3 -6.842 -12.212 13.139 1 52.07 ? C22 6A6 401 A 1 HETATM 22 N N23 6A6 . . . C 3 -8.353 -9.098 11.683 1 48.73 ? N23 6A6 401 A 1 HETATM 23 N N24 6A6 . . . C 3 -8.149 -8.813 10.323 1 48.23 ? N24 6A6 401 A 1 HETATM 24 C C25 6A6 . . . C 3 -7.44 -9.756 9.764 1 47.58 ? C25 6A6 401 A 1 HETATM 25 N N26 6A6 . . . C 3 -7.018 -9.848 8.437 1 48.45 ? N26 6A6 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #