data_5IDV
#
_model_server_result.job_id            -EuOjQcBgvi7EdQDGDLV4Q 
_model_server_result.datetime_utc      '2024-12-01 19:22:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5idv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5IDV 
#
_exptl.entry_id    5IDV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IDV 
_cell.length_a            65.22 
_cell.length_b            89.03 
_cell.length_c            104.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5IDV 
_atom_sites.fract_transf_matrix[1][1]    0.015333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011232 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009602 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 301 301 EDO EDO . 
C 2 EDO A 1 302 302 EDO EDO . 
D 3 HOH A 1 401 348 HOH HOH . 
D 3 HOH A 2 402 270 HOH HOH . 
D 3 HOH A 3 403 282 HOH HOH . 
D 3 HOH A 4 404 85 HOH HOH . 
D 3 HOH A 5 405 225 HOH HOH . 
D 3 HOH A 6 406 259 HOH HOH . 
D 3 HOH A 7 407 195 HOH HOH . 
D 3 HOH A 8 408 174 HOH HOH . 
D 3 HOH A 9 409 291 HOH HOH . 
D 3 HOH A 10 410 189 HOH HOH . 
D 3 HOH A 11 411 123 HOH HOH . 
D 3 HOH A 12 412 286 HOH HOH . 
D 3 HOH A 13 413 228 HOH HOH . 
D 3 HOH A 14 414 41 HOH HOH . 
D 3 HOH A 15 415 98 HOH HOH . 
D 3 HOH A 16 416 342 HOH HOH . 
D 3 HOH A 17 417 254 HOH HOH . 
D 3 HOH A 18 418 337 HOH HOH . 
D 3 HOH A 19 419 201 HOH HOH . 
D 3 HOH A 20 420 236 HOH HOH . 
D 3 HOH A 21 421 303 HOH HOH . 
D 3 HOH A 22 422 210 HOH HOH . 
D 3 HOH A 23 423 312 HOH HOH . 
D 3 HOH A 24 424 45 HOH HOH . 
D 3 HOH A 25 425 240 HOH HOH . 
D 3 HOH A 26 426 89 HOH HOH . 
D 3 HOH A 27 427 274 HOH HOH . 
D 3 HOH A 28 428 169 HOH HOH . 
D 3 HOH A 29 429 243 HOH HOH . 
D 3 HOH A 30 430 273 HOH HOH . 
D 3 HOH A 31 431 268 HOH HOH . 
D 3 HOH A 32 432 80 HOH HOH . 
D 3 HOH A 33 433 53 HOH HOH . 
D 3 HOH A 34 434 72 HOH HOH . 
D 3 HOH A 35 435 334 HOH HOH . 
D 3 HOH A 36 436 32 HOH HOH . 
D 3 HOH A 37 437 287 HOH HOH . 
D 3 HOH A 38 438 207 HOH HOH . 
D 3 HOH A 39 439 183 HOH HOH . 
D 3 HOH A 40 440 250 HOH HOH . 
D 3 HOH A 41 441 79 HOH HOH . 
D 3 HOH A 42 442 290 HOH HOH . 
D 3 HOH A 43 443 87 HOH HOH . 
D 3 HOH A 44 444 163 HOH HOH . 
D 3 HOH A 45 445 12 HOH HOH . 
D 3 HOH A 46 446 142 HOH HOH . 
D 3 HOH A 47 447 258 HOH HOH . 
D 3 HOH A 48 448 113 HOH HOH . 
D 3 HOH A 49 449 168 HOH HOH . 
D 3 HOH A 50 450 220 HOH HOH . 
D 3 HOH A 51 451 128 HOH HOH . 
D 3 HOH A 52 452 100 HOH HOH . 
D 3 HOH A 53 453 46 HOH HOH . 
D 3 HOH A 54 454 64 HOH HOH . 
D 3 HOH A 55 455 324 HOH HOH . 
D 3 HOH A 56 456 107 HOH HOH . 
D 3 HOH A 57 457 74 HOH HOH . 
D 3 HOH A 58 458 50 HOH HOH . 
D 3 HOH A 59 459 106 HOH HOH . 
D 3 HOH A 60 460 28 HOH HOH . 
D 3 HOH A 61 461 108 HOH HOH . 
D 3 HOH A 62 462 294 HOH HOH . 
D 3 HOH A 63 463 261 HOH HOH . 
D 3 HOH A 64 464 39 HOH HOH . 
D 3 HOH A 65 465 137 HOH HOH . 
D 3 HOH A 66 466 83 HOH HOH . 
D 3 HOH A 67 467 154 HOH HOH . 
D 3 HOH A 68 468 65 HOH HOH . 
D 3 HOH A 69 469 92 HOH HOH . 
D 3 HOH A 70 470 181 HOH HOH . 
D 3 HOH A 71 471 81 HOH HOH . 
D 3 HOH A 72 472 208 HOH HOH . 
D 3 HOH A 73 473 6 HOH HOH . 
D 3 HOH A 74 474 58 HOH HOH . 
D 3 HOH A 75 475 262 HOH HOH . 
D 3 HOH A 76 476 13 HOH HOH . 
D 3 HOH A 77 477 159 HOH HOH . 
D 3 HOH A 78 478 144 HOH HOH . 
D 3 HOH A 79 479 43 HOH HOH . 
D 3 HOH A 80 480 251 HOH HOH . 
D 3 HOH A 81 481 180 HOH HOH . 
D 3 HOH A 82 482 139 HOH HOH . 
D 3 HOH A 83 483 47 HOH HOH . 
D 3 HOH A 84 484 146 HOH HOH . 
D 3 HOH A 85 485 249 HOH HOH . 
D 3 HOH A 86 486 66 HOH HOH . 
D 3 HOH A 87 487 126 HOH HOH . 
D 3 HOH A 88 488 105 HOH HOH . 
D 3 HOH A 89 489 130 HOH HOH . 
D 3 HOH A 90 490 230 HOH HOH . 
D 3 HOH A 91 491 125 HOH HOH . 
D 3 HOH A 92 492 60 HOH HOH . 
D 3 HOH A 93 493 11 HOH HOH . 
D 3 HOH A 94 494 350 HOH HOH . 
D 3 HOH A 95 495 31 HOH HOH . 
D 3 HOH A 96 496 2 HOH HOH . 
D 3 HOH A 97 497 27 HOH HOH . 
D 3 HOH A 98 498 140 HOH HOH . 
D 3 HOH A 99 499 70 HOH HOH . 
D 3 HOH A 100 500 131 HOH HOH . 
D 3 HOH A 101 501 57 HOH HOH . 
D 3 HOH A 102 502 238 HOH HOH . 
D 3 HOH A 103 503 153 HOH HOH . 
D 3 HOH A 104 504 223 HOH HOH . 
D 3 HOH A 105 505 121 HOH HOH . 
D 3 HOH A 106 506 218 HOH HOH . 
D 3 HOH A 107 507 141 HOH HOH . 
D 3 HOH A 108 508 62 HOH HOH . 
D 3 HOH A 109 509 59 HOH HOH . 
D 3 HOH A 110 510 295 HOH HOH . 
D 3 HOH A 111 511 71 HOH HOH . 
D 3 HOH A 112 512 9 HOH HOH . 
D 3 HOH A 113 513 178 HOH HOH . 
D 3 HOH A 114 514 307 HOH HOH . 
D 3 HOH A 115 515 48 HOH HOH . 
D 3 HOH A 116 516 237 HOH HOH . 
D 3 HOH A 117 517 44 HOH HOH . 
D 3 HOH A 118 518 36 HOH HOH . 
D 3 HOH A 119 519 24 HOH HOH . 
D 3 HOH A 120 520 67 HOH HOH . 
D 3 HOH A 121 521 136 HOH HOH . 
D 3 HOH A 122 522 33 HOH HOH . 
D 3 HOH A 123 523 233 HOH HOH . 
D 3 HOH A 124 524 133 HOH HOH . 
D 3 HOH A 125 525 246 HOH HOH . 
D 3 HOH A 126 526 114 HOH HOH . 
D 3 HOH A 127 527 4 HOH HOH . 
D 3 HOH A 128 528 54 HOH HOH . 
D 3 HOH A 129 529 8 HOH HOH . 
D 3 HOH A 130 530 94 HOH HOH . 
D 3 HOH A 131 531 122 HOH HOH . 
D 3 HOH A 132 532 116 HOH HOH . 
D 3 HOH A 133 533 63 HOH HOH . 
D 3 HOH A 134 534 96 HOH HOH . 
D 3 HOH A 135 535 222 HOH HOH . 
D 3 HOH A 136 536 150 HOH HOH . 
D 3 HOH A 137 537 165 HOH HOH . 
D 3 HOH A 138 538 132 HOH HOH . 
D 3 HOH A 139 539 297 HOH HOH . 
D 3 HOH A 140 540 205 HOH HOH . 
D 3 HOH A 141 541 55 HOH HOH . 
D 3 HOH A 142 542 84 HOH HOH . 
D 3 HOH A 143 543 314 HOH HOH . 
D 3 HOH A 144 544 93 HOH HOH . 
D 3 HOH A 145 545 152 HOH HOH . 
D 3 HOH A 146 546 76 HOH HOH . 
D 3 HOH A 147 547 212 HOH HOH . 
D 3 HOH A 148 548 101 HOH HOH . 
D 3 HOH A 149 549 192 HOH HOH . 
D 3 HOH A 150 550 172 HOH HOH . 
D 3 HOH A 151 551 52 HOH HOH . 
D 3 HOH A 152 552 95 HOH HOH . 
D 3 HOH A 153 553 229 HOH HOH . 
D 3 HOH A 154 554 176 HOH HOH . 
D 3 HOH A 155 555 15 HOH HOH . 
D 3 HOH A 156 556 206 HOH HOH . 
D 3 HOH A 157 557 190 HOH HOH . 
D 3 HOH A 158 558 61 HOH HOH . 
D 3 HOH A 159 559 310 HOH HOH . 
D 3 HOH A 160 560 18 HOH HOH . 
D 3 HOH A 161 561 38 HOH HOH . 
D 3 HOH A 162 562 162 HOH HOH . 
D 3 HOH A 163 563 102 HOH HOH . 
D 3 HOH A 164 564 111 HOH HOH . 
D 3 HOH A 165 565 173 HOH HOH . 
D 3 HOH A 166 566 157 HOH HOH . 
D 3 HOH A 167 567 256 HOH HOH . 
D 3 HOH A 168 568 73 HOH HOH . 
D 3 HOH A 169 569 40 HOH HOH . 
D 3 HOH A 170 570 200 HOH HOH . 
D 3 HOH A 171 571 88 HOH HOH . 
D 3 HOH A 172 572 248 HOH HOH . 
D 3 HOH A 173 573 86 HOH HOH . 
D 3 HOH A 174 574 226 HOH HOH . 
D 3 HOH A 175 575 91 HOH HOH . 
D 3 HOH A 176 576 242 HOH HOH . 
D 3 HOH A 177 577 119 HOH HOH . 
D 3 HOH A 178 578 16 HOH HOH . 
D 3 HOH A 179 579 219 HOH HOH . 
D 3 HOH A 180 580 269 HOH HOH . 
D 3 HOH A 181 581 56 HOH HOH . 
D 3 HOH A 182 582 298 HOH HOH . 
D 3 HOH A 183 583 42 HOH HOH . 
D 3 HOH A 184 584 68 HOH HOH . 
D 3 HOH A 185 585 90 HOH HOH . 
D 3 HOH A 186 586 151 HOH HOH . 
D 3 HOH A 187 587 213 HOH HOH . 
D 3 HOH A 188 588 51 HOH HOH . 
D 3 HOH A 189 589 209 HOH HOH . 
D 3 HOH A 190 590 109 HOH HOH . 
D 3 HOH A 191 591 97 HOH HOH . 
D 3 HOH A 192 592 145 HOH HOH . 
D 3 HOH A 193 593 103 HOH HOH . 
D 3 HOH A 194 594 216 HOH HOH . 
D 3 HOH A 195 595 264 HOH HOH . 
D 3 HOH A 196 596 10 HOH HOH . 
D 3 HOH A 197 597 313 HOH HOH . 
D 3 HOH A 198 598 21 HOH HOH . 
D 3 HOH A 199 599 182 HOH HOH . 
D 3 HOH A 200 600 25 HOH HOH . 
D 3 HOH A 201 601 199 HOH HOH . 
D 3 HOH A 202 602 211 HOH HOH . 
D 3 HOH A 203 603 308 HOH HOH . 
D 3 HOH A 204 604 77 HOH HOH . 
D 3 HOH A 205 605 194 HOH HOH . 
D 3 HOH A 206 606 160 HOH HOH . 
D 3 HOH A 207 607 239 HOH HOH . 
D 3 HOH A 208 608 82 HOH HOH . 
D 3 HOH A 209 609 345 HOH HOH . 
D 3 HOH A 210 610 99 HOH HOH . 
D 3 HOH A 211 611 171 HOH HOH . 
D 3 HOH A 212 612 23 HOH HOH . 
D 3 HOH A 213 613 346 HOH HOH . 
D 3 HOH A 214 614 299 HOH HOH . 
D 3 HOH A 215 615 266 HOH HOH . 
D 3 HOH A 216 616 315 HOH HOH . 
D 3 HOH A 217 617 112 HOH HOH . 
D 3 HOH A 218 618 305 HOH HOH . 
D 3 HOH A 219 619 247 HOH HOH . 
D 3 HOH A 220 620 214 HOH HOH . 
D 3 HOH A 221 621 115 HOH HOH . 
D 3 HOH A 222 622 179 HOH HOH . 
D 3 HOH A 223 623 285 HOH HOH . 
D 3 HOH A 224 624 20 HOH HOH . 
D 3 HOH A 225 625 193 HOH HOH . 
D 3 HOH A 226 626 161 HOH HOH . 
D 3 HOH A 227 627 289 HOH HOH . 
D 3 HOH A 228 628 221 HOH HOH . 
D 3 HOH A 229 629 336 HOH HOH . 
D 3 HOH A 230 630 280 HOH HOH . 
D 3 HOH A 231 631 293 HOH HOH . 
D 3 HOH A 232 632 124 HOH HOH . 
D 3 HOH A 233 633 260 HOH HOH . 
D 3 HOH A 234 634 104 HOH HOH . 
D 3 HOH A 235 635 333 HOH HOH . 
D 3 HOH A 236 636 155 HOH HOH . 
D 3 HOH A 237 637 281 HOH HOH . 
D 3 HOH A 238 638 197 HOH HOH . 
D 3 HOH A 239 639 26 HOH HOH . 
D 3 HOH A 240 640 134 HOH HOH . 
D 3 HOH A 241 641 263 HOH HOH . 
D 3 HOH A 242 642 244 HOH HOH . 
D 3 HOH A 243 643 34 HOH HOH . 
D 3 HOH A 244 644 319 HOH HOH . 
D 3 HOH A 245 645 129 HOH HOH . 
D 3 HOH A 246 646 170 HOH HOH . 
D 3 HOH A 247 647 288 HOH HOH . 
D 3 HOH A 248 648 147 HOH HOH . 
D 3 HOH A 249 649 227 HOH HOH . 
D 3 HOH A 250 650 22 HOH HOH . 
D 3 HOH A 251 651 255 HOH HOH . 
D 3 HOH A 252 652 276 HOH HOH . 
D 3 HOH A 253 653 265 HOH HOH . 
D 3 HOH A 254 654 69 HOH HOH . 
D 3 HOH A 255 655 19 HOH HOH . 
D 3 HOH A 256 656 275 HOH HOH . 
D 3 HOH A 257 657 283 HOH HOH . 
D 3 HOH A 258 658 309 HOH HOH . 
D 3 HOH A 259 659 320 HOH HOH . 
D 3 HOH A 260 660 127 HOH HOH . 
D 3 HOH A 261 661 143 HOH HOH . 
D 3 HOH A 262 662 301 HOH HOH . 
D 3 HOH A 263 663 37 HOH HOH . 
D 3 HOH A 264 664 215 HOH HOH . 
D 3 HOH A 265 665 292 HOH HOH . 
D 3 HOH A 266 666 231 HOH HOH . 
D 3 HOH A 267 667 245 HOH HOH . 
D 3 HOH A 268 668 332 HOH HOH . 
D 3 HOH A 269 669 177 HOH HOH . 
D 3 HOH A 270 670 75 HOH HOH . 
D 3 HOH A 271 671 253 HOH HOH . 
D 3 HOH A 272 672 166 HOH HOH . 
D 3 HOH A 273 673 232 HOH HOH . 
D 3 HOH A 274 674 187 HOH HOH . 
D 3 HOH A 275 675 217 HOH HOH . 
D 3 HOH A 276 676 204 HOH HOH . 
D 3 HOH A 277 677 296 HOH HOH . 
D 3 HOH A 278 678 198 HOH HOH . 
D 3 HOH A 279 679 241 HOH HOH . 
D 3 HOH A 280 680 306 HOH HOH . 
D 3 HOH A 281 681 135 HOH HOH . 
D 3 HOH A 282 682 304 HOH HOH . 
D 3 HOH A 283 683 148 HOH HOH . 
D 3 HOH A 284 684 184 HOH HOH . 
D 3 HOH A 285 685 196 HOH HOH . 
D 3 HOH A 286 686 344 HOH HOH . 
D 3 HOH A 287 687 267 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 -32.275 -20.005 -4.386 1 26.94 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . C 2 -32.548 -21.334 -5.014 1 31.1 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . C 2 -33.083 -18.927 -5.236 1 23.16 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . C 2 -34.308 -18.515 -4.512 1 21.18 ? O2 EDO 302 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#