data_5IE6 # _model_server_result.job_id zrYMaXe6evuRY4ij8Uwxhg _model_server_result.datetime_utc '2025-01-19 19:45:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ie6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 5IE6 # _exptl.entry_id 5IE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,7S,11E)-7,14,16-trihydroxy-3-methyl-3,4,5,6,7,8,9,10-octahydro-1H-2-benzoxacyclotetradecin-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IE6 _cell.length_a 86.043 _cell.length_b 86.043 _cell.length_c 470.111 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G 1 1 C,H 2 1 C,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C18 H24 O5' _chem_comp.formula_weight 320.38 _chem_comp.id ZHB _chem_comp.mon_nstd_flag . _chem_comp.name (3S,7S,11E)-7,14,16-trihydroxy-3-methyl-3,4,5,6,7,8,9,10-octahydro-1H-2-benzoxacyclotetradecin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAD CAS ZHB sing 376 n n OAB CAQ ZHB doub 377 n n CAS CAH ZHB doub 378 n y CAS CAU ZHB sing 379 n y CAH CAR ZHB sing 380 n y CAA CAV ZHB sing 381 n n CAQ CAU ZHB sing 382 n n CAQ OAP ZHB sing 383 n n CAU CAT ZHB doub 384 n y CAR OAC ZHB sing 385 n n CAR CAI ZHB doub 386 n y CAV OAP ZHB sing 387 n n CAV CAM ZHB sing 388 n n CAT CAI ZHB sing 389 n y CAT CAG ZHB sing 390 n n CAM CAL ZHB sing 391 n n CAG CAF ZHB doub 392 e n CAL CAO ZHB sing 393 n n CAF CAJ ZHB sing 394 n n CAO CAW ZHB sing 395 n n CAJ CAK ZHB sing 396 n n CAW CAN ZHB sing 397 n n CAW OAE ZHB sing 398 n n CAN CAK ZHB sing 399 n n CAO H1 ZHB sing 400 n n CAO H2 ZHB sing 401 n n CAL H3 ZHB sing 402 n n CAL H4 ZHB sing 403 n n CAM H5 ZHB sing 404 n n CAM H6 ZHB sing 405 n n CAV H7 ZHB sing 406 n n CAA H8 ZHB sing 407 n n CAA H9 ZHB sing 408 n n CAA H10 ZHB sing 409 n n OAD H11 ZHB sing 410 n n CAH H12 ZHB sing 411 n n OAC H13 ZHB sing 412 n n CAI H14 ZHB sing 413 n n CAG H15 ZHB sing 414 n n CAF H16 ZHB sing 415 n n CAJ H17 ZHB sing 416 n n CAJ H18 ZHB sing 417 n n CAK H19 ZHB sing 418 n n CAK H20 ZHB sing 419 n n CAN H21 ZHB sing 420 n n CAN H22 ZHB sing 421 n n CAW H23 ZHB sing 422 n n OAE H24 ZHB sing 423 n n # _atom_sites.entry_id 5IE6 _atom_sites.fract_transf_matrix[1][1] 0.011622 _atom_sites.fract_transf_matrix[1][2] 0.00671 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZHB A 1 300 300 ZHB ZHB . E 2 ZHB B 1 301 301 ZHB ZHB . F 3 HOH A 1 401 13 HOH HOH . F 3 HOH A 2 402 195 HOH HOH . F 3 HOH A 3 403 123 HOH HOH . F 3 HOH A 4 404 38 HOH HOH . F 3 HOH A 5 405 76 HOH HOH . F 3 HOH A 6 406 145 HOH HOH . F 3 HOH A 7 407 176 HOH HOH . F 3 HOH A 8 408 70 HOH HOH . F 3 HOH A 9 409 28 HOH HOH . F 3 HOH A 10 410 27 HOH HOH . F 3 HOH A 11 411 148 HOH HOH . F 3 HOH A 12 412 71 HOH HOH . F 3 HOH A 13 413 67 HOH HOH . F 3 HOH A 14 414 63 HOH HOH . F 3 HOH A 15 415 180 HOH HOH . F 3 HOH A 16 416 32 HOH HOH . F 3 HOH A 17 417 66 HOH HOH . F 3 HOH A 18 418 134 HOH HOH . F 3 HOH A 19 419 62 HOH HOH . F 3 HOH A 20 420 65 HOH HOH . F 3 HOH A 21 421 46 HOH HOH . F 3 HOH A 22 422 80 HOH HOH . F 3 HOH A 23 423 34 HOH HOH . F 3 HOH A 24 424 131 HOH HOH . F 3 HOH A 25 425 21 HOH HOH . F 3 HOH A 26 426 53 HOH HOH . F 3 HOH A 27 427 29 HOH HOH . F 3 HOH A 28 428 16 HOH HOH . F 3 HOH A 29 429 17 HOH HOH . F 3 HOH A 30 430 20 HOH HOH . F 3 HOH A 31 431 1 HOH HOH . F 3 HOH A 32 432 64 HOH HOH . F 3 HOH A 33 433 199 HOH HOH . F 3 HOH A 34 434 100 HOH HOH . F 3 HOH A 35 435 183 HOH HOH . F 3 HOH A 36 436 33 HOH HOH . F 3 HOH A 37 437 7 HOH HOH . F 3 HOH A 38 438 141 HOH HOH . F 3 HOH A 39 439 127 HOH HOH . F 3 HOH A 40 440 12 HOH HOH . F 3 HOH A 41 441 47 HOH HOH . F 3 HOH A 42 442 54 HOH HOH . F 3 HOH A 43 443 166 HOH HOH . F 3 HOH A 44 444 164 HOH HOH . F 3 HOH A 45 445 44 HOH HOH . F 3 HOH A 46 446 79 HOH HOH . F 3 HOH A 47 447 30 HOH HOH . F 3 HOH A 48 448 170 HOH HOH . F 3 HOH A 49 449 5 HOH HOH . F 3 HOH A 50 450 68 HOH HOH . F 3 HOH A 51 451 93 HOH HOH . F 3 HOH A 52 452 186 HOH HOH . F 3 HOH A 53 453 104 HOH HOH . F 3 HOH A 54 454 3 HOH HOH . F 3 HOH A 55 455 49 HOH HOH . F 3 HOH A 56 456 169 HOH HOH . F 3 HOH A 57 457 56 HOH HOH . F 3 HOH A 58 458 72 HOH HOH . F 3 HOH A 59 459 59 HOH HOH . F 3 HOH A 60 460 124 HOH HOH . F 3 HOH A 61 461 86 HOH HOH . F 3 HOH A 62 462 73 HOH HOH . F 3 HOH A 63 463 177 HOH HOH . F 3 HOH A 64 464 152 HOH HOH . F 3 HOH A 65 465 78 HOH HOH . F 3 HOH A 66 466 45 HOH HOH . F 3 HOH A 67 467 210 HOH HOH . F 3 HOH A 68 468 193 HOH HOH . F 3 HOH A 69 469 42 HOH HOH . F 3 HOH A 70 470 89 HOH HOH . F 3 HOH A 71 471 179 HOH HOH . F 3 HOH A 72 472 209 HOH HOH . F 3 HOH A 73 473 217 HOH HOH . F 3 HOH A 74 474 203 HOH HOH . F 3 HOH A 75 475 167 HOH HOH . G 3 HOH B 1 401 51 HOH HOH . G 3 HOH B 2 402 10 HOH HOH . G 3 HOH B 3 403 171 HOH HOH . G 3 HOH B 4 404 31 HOH HOH . G 3 HOH B 5 405 8 HOH HOH . G 3 HOH B 6 406 81 HOH HOH . G 3 HOH B 7 407 40 HOH HOH . G 3 HOH B 8 408 25 HOH HOH . G 3 HOH B 9 409 157 HOH HOH . G 3 HOH B 10 410 208 HOH HOH . G 3 HOH B 11 411 74 HOH HOH . G 3 HOH B 12 412 84 HOH HOH . G 3 HOH B 13 413 192 HOH HOH . G 3 HOH B 14 414 58 HOH HOH . G 3 HOH B 15 415 37 HOH HOH . G 3 HOH B 16 416 57 HOH HOH . G 3 HOH B 17 417 15 HOH HOH . G 3 HOH B 18 418 61 HOH HOH . G 3 HOH B 19 419 200 HOH HOH . G 3 HOH B 20 420 196 HOH HOH . G 3 HOH B 21 421 18 HOH HOH . G 3 HOH B 22 422 19 HOH HOH . G 3 HOH B 23 423 211 HOH HOH . G 3 HOH B 24 424 82 HOH HOH . G 3 HOH B 25 425 87 HOH HOH . G 3 HOH B 26 426 83 HOH HOH . G 3 HOH B 27 427 43 HOH HOH . G 3 HOH B 28 428 11 HOH HOH . G 3 HOH B 29 429 158 HOH HOH . G 3 HOH B 30 430 24 HOH HOH . G 3 HOH B 31 431 149 HOH HOH . G 3 HOH B 32 432 6 HOH HOH . G 3 HOH B 33 433 23 HOH HOH . G 3 HOH B 34 434 26 HOH HOH . G 3 HOH B 35 435 2 HOH HOH . G 3 HOH B 36 436 109 HOH HOH . G 3 HOH B 37 437 119 HOH HOH . G 3 HOH B 38 438 103 HOH HOH . G 3 HOH B 39 439 172 HOH HOH . G 3 HOH B 40 440 214 HOH HOH . G 3 HOH B 41 441 168 HOH HOH . G 3 HOH B 42 442 182 HOH HOH . G 3 HOH B 43 443 9 HOH HOH . G 3 HOH B 44 444 35 HOH HOH . G 3 HOH B 45 445 173 HOH HOH . G 3 HOH B 46 446 48 HOH HOH . G 3 HOH B 47 447 95 HOH HOH . G 3 HOH B 48 448 147 HOH HOH . G 3 HOH B 49 449 165 HOH HOH . G 3 HOH B 50 450 39 HOH HOH . G 3 HOH B 51 451 162 HOH HOH . G 3 HOH B 52 452 50 HOH HOH . G 3 HOH B 53 453 159 HOH HOH . G 3 HOH B 54 454 22 HOH HOH . G 3 HOH B 55 455 155 HOH HOH . G 3 HOH B 56 456 14 HOH HOH . G 3 HOH B 57 457 175 HOH HOH . G 3 HOH B 58 458 156 HOH HOH . G 3 HOH B 59 459 174 HOH HOH . G 3 HOH B 60 460 85 HOH HOH . G 3 HOH B 61 461 218 HOH HOH . G 3 HOH B 62 462 212 HOH HOH . G 3 HOH B 63 463 207 HOH HOH . H 3 HOH C 1 301 116 HOH HOH . H 3 HOH C 2 302 161 HOH HOH . H 3 HOH C 3 303 99 HOH HOH . H 3 HOH C 4 304 181 HOH HOH . H 3 HOH C 5 305 160 HOH HOH . H 3 HOH C 6 306 111 HOH HOH . H 3 HOH C 7 307 36 HOH HOH . H 3 HOH C 8 308 77 HOH HOH . H 3 HOH C 9 309 154 HOH HOH . H 3 HOH C 10 310 69 HOH HOH . H 3 HOH C 11 311 130 HOH HOH . H 3 HOH C 12 312 205 HOH HOH . H 3 HOH C 13 313 112 HOH HOH . H 3 HOH C 14 314 115 HOH HOH . H 3 HOH C 15 315 185 HOH HOH . H 3 HOH C 16 316 132 HOH HOH . H 3 HOH C 17 317 221 HOH HOH . H 3 HOH C 18 318 178 HOH HOH . H 3 HOH C 19 319 105 HOH HOH . H 3 HOH C 20 320 41 HOH HOH . H 3 HOH C 21 321 88 HOH HOH . H 3 HOH C 22 322 117 HOH HOH . H 3 HOH C 23 323 92 HOH HOH . H 3 HOH C 24 324 75 HOH HOH . H 3 HOH C 25 325 153 HOH HOH . H 3 HOH C 26 326 204 HOH HOH . H 3 HOH C 27 327 223 HOH HOH . H 3 HOH C 28 328 108 HOH HOH . H 3 HOH C 29 329 118 HOH HOH . H 3 HOH C 30 330 55 HOH HOH . H 3 HOH C 31 331 151 HOH HOH . H 3 HOH C 32 332 4 HOH HOH . H 3 HOH C 33 333 102 HOH HOH . H 3 HOH C 34 334 98 HOH HOH . H 3 HOH C 35 335 139 HOH HOH . H 3 HOH C 36 336 107 HOH HOH . H 3 HOH C 37 337 106 HOH HOH . H 3 HOH C 38 338 94 HOH HOH . H 3 HOH C 39 339 216 HOH HOH . H 3 HOH C 40 340 126 HOH HOH . H 3 HOH C 41 341 194 HOH HOH . H 3 HOH C 42 342 129 HOH HOH . H 3 HOH C 43 343 197 HOH HOH . H 3 HOH C 44 344 110 HOH HOH . H 3 HOH C 45 345 138 HOH HOH . H 3 HOH C 46 346 198 HOH HOH . H 3 HOH C 47 347 133 HOH HOH . H 3 HOH C 48 348 52 HOH HOH . H 3 HOH C 49 349 135 HOH HOH . H 3 HOH C 50 350 146 HOH HOH . H 3 HOH C 51 351 190 HOH HOH . H 3 HOH C 52 352 120 HOH HOH . H 3 HOH C 53 353 187 HOH HOH . H 3 HOH C 54 354 201 HOH HOH . H 3 HOH C 55 355 188 HOH HOH . H 3 HOH C 56 356 96 HOH HOH . H 3 HOH C 57 357 191 HOH HOH . H 3 HOH C 58 358 128 HOH HOH . H 3 HOH C 59 359 113 HOH HOH . H 3 HOH C 60 360 91 HOH HOH . H 3 HOH C 61 361 97 HOH HOH . H 3 HOH C 62 362 136 HOH HOH . H 3 HOH C 63 363 140 HOH HOH . H 3 HOH C 64 364 219 HOH HOH . H 3 HOH C 65 365 60 HOH HOH . H 3 HOH C 66 366 121 HOH HOH . H 3 HOH C 67 367 215 HOH HOH . H 3 HOH C 68 368 202 HOH HOH . H 3 HOH C 69 369 144 HOH HOH . H 3 HOH C 70 370 122 HOH HOH . H 3 HOH C 71 371 189 HOH HOH . H 3 HOH C 72 372 226 HOH HOH . H 3 HOH C 73 373 206 HOH HOH . H 3 HOH C 74 374 101 HOH HOH . H 3 HOH C 75 375 213 HOH HOH . H 3 HOH C 76 376 150 HOH HOH . H 3 HOH C 77 377 125 HOH HOH . H 3 HOH C 78 378 114 HOH HOH . H 3 HOH C 79 379 163 HOH HOH . H 3 HOH C 80 380 227 HOH HOH . H 3 HOH C 81 381 225 HOH HOH . H 3 HOH C 82 382 143 HOH HOH . H 3 HOH C 83 383 184 HOH HOH . H 3 HOH C 84 384 228 HOH HOH . H 3 HOH C 85 385 137 HOH HOH . H 3 HOH C 86 386 142 HOH HOH . H 3 HOH C 87 387 224 HOH HOH . H 3 HOH C 88 388 222 HOH HOH . H 3 HOH C 89 389 90 HOH HOH . H 3 HOH C 90 390 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAO ZHB . . . D 2 -7.331 15.592 4.819 1 61.81 ? CAO ZHB 300 A 1 HETATM 2 C CAL ZHB . . . D 2 -8.485 16.092 5.666 1 62.48 ? CAL ZHB 300 A 1 HETATM 3 C CAM ZHB . . . D 2 -8.558 15.296 6.955 1 67.76 ? CAM ZHB 300 A 1 HETATM 4 C CAV ZHB . . . D 2 -9.995 15.22 7.455 1 61.19 ? CAV ZHB 300 A 1 HETATM 5 C CAA ZHB . . . D 2 -9.935 14.482 8.79 1 72.44 ? CAA ZHB 300 A 1 HETATM 6 O OAP ZHB . . . D 2 -10.809 14.524 6.474 1 54.84 ? OAP ZHB 300 A 1 HETATM 7 C CAQ ZHB . . . D 2 -11.961 13.918 6.867 1 56.5 ? CAQ ZHB 300 A 1 HETATM 8 O OAB ZHB . . . D 2 -12.537 14.14 7.936 1 62.3 ? OAB ZHB 300 A 1 HETATM 9 C CAU ZHB . . . D 2 -12.305 12.811 6.096 1 57.52 ? CAU ZHB 300 A 1 HETATM 10 C CAS ZHB . . . D 2 -12.972 11.761 6.725 1 52 ? CAS ZHB 300 A 1 HETATM 11 O OAD ZHB . . . D 2 -13.306 11.936 8.017 1 50.78 ? OAD ZHB 300 A 1 HETATM 12 C CAH ZHB . . . D 2 -13.252 10.567 6.085 1 58.83 ? CAH ZHB 300 A 1 HETATM 13 C CAR ZHB . . . D 2 -12.892 10.431 4.756 1 55.22 ? CAR ZHB 300 A 1 HETATM 14 O OAC ZHB . . . D 2 -13.185 9.289 4.093 1 68.64 ? OAC ZHB 300 A 1 HETATM 15 C CAI ZHB . . . D 2 -12.277 11.476 4.088 1 51.59 ? CAI ZHB 300 A 1 HETATM 16 C CAT ZHB . . . D 2 -11.92 12.651 4.755 1 62.69 ? CAT ZHB 300 A 1 HETATM 17 C CAG ZHB . . . D 2 -11.335 13.647 3.973 1 58.76 ? CAG ZHB 300 A 1 HETATM 18 C CAF ZHB . . . D 2 -10.628 13.207 2.854 1 72.57 ? CAF ZHB 300 A 1 HETATM 19 C CAJ ZHB . . . D 2 -10.336 13.985 1.751 1 68.69 ? CAJ ZHB 300 A 1 HETATM 20 C CAK ZHB . . . D 2 -9.563 15.179 2.123 1 62.55 ? CAK ZHB 300 A 1 HETATM 21 C CAN ZHB . . . D 2 -8.183 14.75 2.594 1 59.25 ? CAN ZHB 300 A 1 HETATM 22 C CAW ZHB . . . D 2 -7.662 15.946 3.385 1 62.99 ? CAW ZHB 300 A 1 HETATM 23 O OAE ZHB . . . D 2 -6.538 16.536 2.73 1 68.83 ? OAE ZHB 300 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #