data_5IEL # _model_server_result.job_id ypOMyLoCmocCYJjQEWECsg _model_server_result.datetime_utc '2025-01-15 17:07:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5IEL # _exptl.entry_id 5IEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.397 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IEL _cell.length_a 80.756 _cell.length_b 80.756 _cell.length_c 36.561 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? covale ? covale1 A NZ LYS 1 A LYS 1 1_555 B C6 6B9 . A 6B9 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? # _chem_comp.formula 'C21 H13 N O5 S' _chem_comp.formula_weight 391.397 _chem_comp.id 6B9 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C6 6B9 sing 1 n n C6 N 6B9 doub 2 n n N C5 6B9 sing 3 n n C C5 6B9 doub 4 n y C C1 6B9 sing 5 n y C5 C4 6B9 sing 6 n y C1 C2 6B9 doub 7 n y C4 C3 6B9 doub 8 n y C2 C3 6B9 sing 9 n y C2 C8 6B9 sing 10 n n C3 C7 6B9 sing 11 n n C14 C13 6B9 doub 12 n n C14 C9 6B9 sing 13 n n C13 C12 6B9 sing 14 n n C8 C9 6B9 doub 15 n n C8 C16 6B9 sing 16 n n O C7 6B9 doub 17 n n C7 O1 6B9 sing 18 n n C9 C10 6B9 sing 19 n n C17 C16 6B9 sing 20 n y C17 C18 6B9 doub 21 n y C16 C15 6B9 doub 22 n y C12 O2 6B9 doub 23 n n C12 C11 6B9 sing 24 n n C18 C19 6B9 sing 25 n y C10 C11 6B9 doub 26 n n C10 O3 6B9 sing 27 n n C15 O3 6B9 sing 28 n n C15 C20 6B9 sing 29 n y C19 C20 6B9 doub 30 n y C19 O4 6B9 sing 31 n n C4 H1 6B9 sing 32 n n C6 H2 6B9 sing 33 n n S H3 6B9 sing 34 n n C H4 6B9 sing 35 n n O1 H5 6B9 sing 36 n n C1 H6 6B9 sing 37 n n C17 H7 6B9 sing 38 n n C18 H8 6B9 sing 39 n n O4 H9 6B9 sing 40 n n C20 H10 6B9 sing 41 n n C11 H11 6B9 sing 42 n n C13 H13 6B9 sing 43 n n C14 H14 6B9 sing 44 n n # _atom_sites.entry_id 5IEL _atom_sites.fract_transf_matrix[1][1] 0.012383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6B9 A 1 201 130 6B9 FCZ . C 3 HOH A 1 301 35 HOH HOH . C 3 HOH A 2 302 190 HOH HOH . C 3 HOH A 3 303 183 HOH HOH . C 3 HOH A 4 304 261 HOH HOH . C 3 HOH A 5 305 194 HOH HOH . C 3 HOH A 6 306 67 HOH HOH . C 3 HOH A 7 307 51 HOH HOH . C 3 HOH A 8 308 79 HOH HOH . C 3 HOH A 9 309 252 HOH HOH . C 3 HOH A 10 310 23 HOH HOH . C 3 HOH A 11 311 198 HOH HOH . C 3 HOH A 12 312 65 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 39 HOH HOH . C 3 HOH A 15 315 219 HOH HOH . C 3 HOH A 16 316 171 HOH HOH . C 3 HOH A 17 317 231 HOH HOH . C 3 HOH A 18 318 2 HOH HOH . C 3 HOH A 19 319 85 HOH HOH . C 3 HOH A 20 320 38 HOH HOH . C 3 HOH A 21 321 59 HOH HOH . C 3 HOH A 22 322 1 HOH HOH . C 3 HOH A 23 323 184 HOH HOH . C 3 HOH A 24 324 68 HOH HOH . C 3 HOH A 25 325 10 HOH HOH . C 3 HOH A 26 326 101 HOH HOH . C 3 HOH A 27 327 45 HOH HOH . C 3 HOH A 28 328 71 HOH HOH . C 3 HOH A 29 329 43 HOH HOH . C 3 HOH A 30 330 56 HOH HOH . C 3 HOH A 31 331 225 HOH HOH . C 3 HOH A 32 332 90 HOH HOH . C 3 HOH A 33 333 9 HOH HOH . C 3 HOH A 34 334 220 HOH HOH . C 3 HOH A 35 335 36 HOH HOH . C 3 HOH A 36 336 125 HOH HOH . C 3 HOH A 37 337 18 HOH HOH . C 3 HOH A 38 338 260 HOH HOH . C 3 HOH A 39 339 20 HOH HOH . C 3 HOH A 40 340 109 HOH HOH . C 3 HOH A 41 341 40 HOH HOH . C 3 HOH A 42 342 66 HOH HOH . C 3 HOH A 43 343 93 HOH HOH . C 3 HOH A 44 344 57 HOH HOH . C 3 HOH A 45 345 24 HOH HOH . C 3 HOH A 46 346 21 HOH HOH . C 3 HOH A 47 347 33 HOH HOH . C 3 HOH A 48 348 211 HOH HOH . C 3 HOH A 49 349 30 HOH HOH . C 3 HOH A 50 350 25 HOH HOH . C 3 HOH A 51 351 64 HOH HOH . C 3 HOH A 52 352 53 HOH HOH . C 3 HOH A 53 353 41 HOH HOH . C 3 HOH A 54 354 37 HOH HOH . C 3 HOH A 55 355 48 HOH HOH . C 3 HOH A 56 356 29 HOH HOH . C 3 HOH A 57 357 62 HOH HOH . C 3 HOH A 58 358 257 HOH HOH . C 3 HOH A 59 359 89 HOH HOH . C 3 HOH A 60 360 42 HOH HOH . C 3 HOH A 61 361 217 HOH HOH . C 3 HOH A 62 362 12 HOH HOH . C 3 HOH A 63 363 8 HOH HOH . C 3 HOH A 64 364 81 HOH HOH . C 3 HOH A 65 365 46 HOH HOH . C 3 HOH A 66 366 22 HOH HOH . C 3 HOH A 67 367 32 HOH HOH . C 3 HOH A 68 368 26 HOH HOH . C 3 HOH A 69 369 34 HOH HOH . C 3 HOH A 70 370 16 HOH HOH . C 3 HOH A 71 371 60 HOH HOH . C 3 HOH A 72 372 213 HOH HOH . C 3 HOH A 73 373 14 HOH HOH . C 3 HOH A 74 374 17 HOH HOH . C 3 HOH A 75 375 77 HOH HOH . C 3 HOH A 76 376 216 HOH HOH . C 3 HOH A 77 377 73 HOH HOH . C 3 HOH A 78 378 212 HOH HOH . C 3 HOH A 79 379 124 HOH HOH . C 3 HOH A 80 380 74 HOH HOH . C 3 HOH A 81 381 7 HOH HOH . C 3 HOH A 82 382 247 HOH HOH . C 3 HOH A 83 383 95 HOH HOH . C 3 HOH A 84 384 94 HOH HOH . C 3 HOH A 85 385 236 HOH HOH . C 3 HOH A 86 386 253 HOH HOH . C 3 HOH A 87 387 61 HOH HOH . C 3 HOH A 88 388 72 HOH HOH . C 3 HOH A 89 389 258 HOH HOH . C 3 HOH A 90 390 15 HOH HOH . C 3 HOH A 91 391 249 HOH HOH . C 3 HOH A 92 392 91 HOH HOH . C 3 HOH A 93 393 27 HOH HOH . C 3 HOH A 94 394 28 HOH HOH . C 3 HOH A 95 395 49 HOH HOH . C 3 HOH A 96 396 233 HOH HOH . C 3 HOH A 97 397 75 HOH HOH . C 3 HOH A 98 398 4 HOH HOH . C 3 HOH A 99 399 11 HOH HOH . C 3 HOH A 100 400 179 HOH HOH . C 3 HOH A 101 401 134 HOH HOH . C 3 HOH A 102 402 237 HOH HOH . C 3 HOH A 103 403 200 HOH HOH . C 3 HOH A 104 404 54 HOH HOH . C 3 HOH A 105 405 215 HOH HOH . C 3 HOH A 106 406 84 HOH HOH . C 3 HOH A 107 407 47 HOH HOH . C 3 HOH A 108 408 203 HOH HOH . C 3 HOH A 109 409 92 HOH HOH . C 3 HOH A 110 410 112 HOH HOH . C 3 HOH A 111 411 88 HOH HOH . C 3 HOH A 112 412 224 HOH HOH . C 3 HOH A 113 413 69 HOH HOH . C 3 HOH A 114 414 241 HOH HOH . C 3 HOH A 115 415 263 HOH HOH . C 3 HOH A 116 416 256 HOH HOH . C 3 HOH A 117 417 222 HOH HOH . C 3 HOH A 118 418 31 HOH HOH . C 3 HOH A 119 419 5 HOH HOH . C 3 HOH A 120 420 63 HOH HOH . C 3 HOH A 121 421 192 HOH HOH . C 3 HOH A 122 422 102 HOH HOH . C 3 HOH A 123 423 129 HOH HOH . C 3 HOH A 124 424 246 HOH HOH . C 3 HOH A 125 425 229 HOH HOH . C 3 HOH A 126 426 169 HOH HOH . C 3 HOH A 127 427 250 HOH HOH . C 3 HOH A 128 428 133 HOH HOH . C 3 HOH A 129 429 255 HOH HOH . C 3 HOH A 130 430 193 HOH HOH . C 3 HOH A 131 431 174 HOH HOH . C 3 HOH A 132 432 70 HOH HOH . C 3 HOH A 133 433 168 HOH HOH . C 3 HOH A 134 434 100 HOH HOH . C 3 HOH A 135 435 87 HOH HOH . C 3 HOH A 136 436 114 HOH HOH . C 3 HOH A 137 437 117 HOH HOH . C 3 HOH A 138 438 195 HOH HOH . C 3 HOH A 139 439 50 HOH HOH . C 3 HOH A 140 440 206 HOH HOH . C 3 HOH A 141 441 248 HOH HOH . C 3 HOH A 142 442 167 HOH HOH . C 3 HOH A 143 443 76 HOH HOH . C 3 HOH A 144 444 251 HOH HOH . C 3 HOH A 145 445 113 HOH HOH . C 3 HOH A 146 446 242 HOH HOH . C 3 HOH A 147 447 156 HOH HOH . C 3 HOH A 148 448 173 HOH HOH . C 3 HOH A 149 449 191 HOH HOH . C 3 HOH A 150 450 82 HOH HOH . C 3 HOH A 151 451 187 HOH HOH . C 3 HOH A 152 452 58 HOH HOH . C 3 HOH A 153 453 185 HOH HOH . C 3 HOH A 154 454 170 HOH HOH . C 3 HOH A 155 455 166 HOH HOH . C 3 HOH A 156 456 264 HOH HOH . C 3 HOH A 157 457 254 HOH HOH . C 3 HOH A 158 458 197 HOH HOH . C 3 HOH A 159 459 266 HOH HOH . C 3 HOH A 160 460 262 HOH HOH . C 3 HOH A 161 461 138 HOH HOH . C 3 HOH A 162 462 186 HOH HOH . C 3 HOH A 163 463 189 HOH HOH . C 3 HOH A 164 464 201 HOH HOH . C 3 HOH A 165 465 196 HOH HOH . C 3 HOH A 166 466 265 HOH HOH . C 3 HOH A 167 467 204 HOH HOH . C 3 HOH A 168 468 199 HOH HOH . C 3 HOH A 169 469 245 HOH HOH . C 3 HOH A 170 470 205 HOH HOH . C 3 HOH A 171 471 128 HOH HOH . C 3 HOH A 172 472 226 HOH HOH . C 3 HOH A 173 473 244 HOH HOH . C 3 HOH A 174 474 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 6B9 . . . B 2 -8.301 12.155 -6.777 1 20.77 ? O 6B9 201 A 1 HETATM 2 C C7 6B9 . . . B 2 -7.386 11.323 -6.62 1 19.85 ? C7 6B9 201 A 1 HETATM 3 C C3 6B9 . . . B 2 -6.661 10.712 -7.805 1 16.76 ? C3 6B9 201 A 1 HETATM 4 C C4 6B9 . . . B 2 -6.212 11.605 -8.75 1 16.56 ? C4 6B9 201 A 1 HETATM 5 C C5 6B9 . . . B 2 -5.541 11.154 -9.863 1 17.27 ? C5 6B9 201 A 1 HETATM 6 N N 6B9 . . . B 2 -5.096 11.977 -10.897 1 18.05 ? N 6B9 201 A 1 HETATM 7 C C6 6B9 . . . B 2 -3.878 12.174 -11.421 1 17.76 ? C6 6B9 201 A 1 HETATM 8 S S 6B9 . . . B 2 -3.554 12.921 -12.775 1 20.33 ? S 6B9 201 A 1 HETATM 9 C C 6B9 . . . B 2 -5.296 9.773 -10.017 1 18.55 ? C 6B9 201 A 1 HETATM 10 O O1 6B9 . . . B 2 -7.076 10.855 -5.392 1 20.74 ? O1 6B9 201 A 1 HETATM 11 C C8 6B9 . . . B 2 -6.931 8.522 -6.836 1 17.54 ? C8 6B9 201 A 1 HETATM 12 C C2 6B9 . . . B 2 -6.413 9.333 -7.967 1 16.56 ? C2 6B9 201 A 1 HETATM 13 C C1 6B9 . . . B 2 -5.736 8.869 -9.069 1 17.48 ? C1 6B9 201 A 1 HETATM 14 C C16 6B9 . . . B 2 -5.974 7.575 -6.179 1 18.4 ? C16 6B9 201 A 1 HETATM 15 C C17 6B9 . . . B 2 -4.599 7.649 -6.41 1 17.92 ? C17 6B9 201 A 1 HETATM 16 C C18 6B9 . . . B 2 -3.728 6.78 -5.767 1 20.05 ? C18 6B9 201 A 1 HETATM 17 C C19 6B9 . . . B 2 -4.229 5.785 -4.906 1 21.71 ? C19 6B9 201 A 1 HETATM 18 O O4 6B9 . . . B 2 -3.373 4.918 -4.296 1 28.5 ? O4 6B9 201 A 1 HETATM 19 C C20 6B9 . . . B 2 -5.601 5.669 -4.685 1 21.24 ? C20 6B9 201 A 1 HETATM 20 C C15 6B9 . . . B 2 -6.45 6.569 -5.306 1 18.81 ? C15 6B9 201 A 1 HETATM 21 O O3 6B9 . . . B 2 -7.813 6.403 -5.018 1 19.98 ? O3 6B9 201 A 1 HETATM 22 C C10 6B9 . . . B 2 -8.737 7.222 -5.658 1 18.74 ? C10 6B9 201 A 1 HETATM 23 C C11 6B9 . . . B 2 -10.07 7.003 -5.34 1 21.37 ? C11 6B9 201 A 1 HETATM 24 C C12 6B9 . . . B 2 -11.062 7.732 -6.018 1 20.1 ? C12 6B9 201 A 1 HETATM 25 O O2 6B9 . . . B 2 -12.355 7.422 -5.713 1 24.22 ? O2 6B9 201 A 1 HETATM 26 C C13 6B9 . . . B 2 -10.709 8.688 -6.978 1 19.55 ? C13 6B9 201 A 1 HETATM 27 C C14 6B9 . . . B 2 -9.368 8.907 -7.263 1 17.93 ? C14 6B9 201 A 1 HETATM 28 C C9 6B9 . . . B 2 -8.355 8.202 -6.605 1 17.49 ? C9 6B9 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #