data_5IEN # _model_server_result.job_id LJq903rezBSim8Q1zxLErw _model_server_result.datetime_utc '2024-12-24 01:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ien # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5IEN # _exptl.entry_id 5IEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.637 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IEN _cell.length_a 48.831 _cell.length_b 60.415 _cell.length_c 93.942 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H44 O2' _chem_comp.formula_weight 400.637 _chem_comp.id VDY _chem_comp.mon_nstd_flag . _chem_comp.name 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '25-HYDROXYVITAMIN D3' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 VDY sing 376 n n O1 HO1 VDY sing 377 n n O2 C25 VDY sing 378 n n O2 HO2 VDY sing 379 n n C1 C2 VDY sing 380 n n C1 C10 VDY sing 381 n n C1 H11 VDY sing 382 n n C1 H12 VDY sing 383 n n C2 C3 VDY sing 384 n n C2 H21 VDY sing 385 n n C2 H22 VDY sing 386 n n C3 C4 VDY sing 387 n n C3 H31 VDY sing 388 n n C4 C5 VDY sing 389 n n C4 H41 VDY sing 390 n n C4 H42 VDY sing 391 n n C5 C6 VDY doub 392 z n C5 C10 VDY sing 393 n n C6 C7 VDY sing 394 n n C6 H61 VDY sing 395 n n C7 C8 VDY doub 396 e n C7 H71 VDY sing 397 n n C8 C9 VDY sing 398 n n C8 C14 VDY sing 399 n n C9 C11 VDY sing 400 n n C9 H91 VDY sing 401 n n C9 H92 VDY sing 402 n n C10 C19 VDY doub 403 n n C11 C12 VDY sing 404 n n C11 H111 VDY sing 405 n n C11 H112 VDY sing 406 n n C12 C13 VDY sing 407 n n C12 H121 VDY sing 408 n n C12 H122 VDY sing 409 n n C13 C14 VDY sing 410 n n C13 C17 VDY sing 411 n n C13 C18 VDY sing 412 n n C14 C15 VDY sing 413 n n C14 H141 VDY sing 414 n n C15 C16 VDY sing 415 n n C15 H151 VDY sing 416 n n C15 H152 VDY sing 417 n n C16 C17 VDY sing 418 n n C16 H161 VDY sing 419 n n C16 H162 VDY sing 420 n n C17 C20 VDY sing 421 n n C17 H171 VDY sing 422 n n C18 H181 VDY sing 423 n n C18 H182 VDY sing 424 n n C18 H183 VDY sing 425 n n C19 H191 VDY sing 426 n n C19 H192 VDY sing 427 n n C20 C21 VDY sing 428 n n C20 C22 VDY sing 429 n n C20 H201 VDY sing 430 n n C21 H211 VDY sing 431 n n C21 H212 VDY sing 432 n n C21 H213 VDY sing 433 n n C22 C23 VDY sing 434 n n C22 H221 VDY sing 435 n n C22 H222 VDY sing 436 n n C23 C24 VDY sing 437 n n C23 H231 VDY sing 438 n n C23 H232 VDY sing 439 n n C24 C25 VDY sing 440 n n C24 H241 VDY sing 441 n n C24 H242 VDY sing 442 n n C25 C26 VDY sing 443 n n C25 C27 VDY sing 444 n n C26 H261 VDY sing 445 n n C26 H262 VDY sing 446 n n C26 H263 VDY sing 447 n n C27 H271 VDY sing 448 n n C27 H272 VDY sing 449 n n C27 H273 VDY sing 450 n n # _atom_sites.entry_id 5IEN _atom_sites.fract_transf_matrix[1][1] 0.020479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VDY A 1 201 1 VDY VDY . D 3 GOL A 1 202 1 GOL GOL . E 2 VDY B 1 201 2 VDY VDY . F 4 HOH A 1 301 22 HOH HOH . F 4 HOH A 2 302 13 HOH HOH . F 4 HOH A 3 303 57 HOH HOH . F 4 HOH A 4 304 28 HOH HOH . F 4 HOH A 5 305 19 HOH HOH . F 4 HOH A 6 306 40 HOH HOH . F 4 HOH A 7 307 76 HOH HOH . F 4 HOH A 8 308 24 HOH HOH . F 4 HOH A 9 309 27 HOH HOH . F 4 HOH A 10 310 74 HOH HOH . F 4 HOH A 11 311 2 HOH HOH . F 4 HOH A 12 312 49 HOH HOH . F 4 HOH A 13 313 17 HOH HOH . F 4 HOH A 14 314 56 HOH HOH . F 4 HOH A 15 315 34 HOH HOH . F 4 HOH A 16 316 80 HOH HOH . F 4 HOH A 17 317 54 HOH HOH . F 4 HOH A 18 318 41 HOH HOH . F 4 HOH A 19 319 84 HOH HOH . F 4 HOH A 20 320 39 HOH HOH . F 4 HOH A 21 321 70 HOH HOH . F 4 HOH A 22 322 3 HOH HOH . F 4 HOH A 23 323 29 HOH HOH . F 4 HOH A 24 324 35 HOH HOH . F 4 HOH A 25 325 33 HOH HOH . F 4 HOH A 26 326 83 HOH HOH . F 4 HOH A 27 327 8 HOH HOH . F 4 HOH A 28 328 61 HOH HOH . F 4 HOH A 29 329 5 HOH HOH . F 4 HOH A 30 330 79 HOH HOH . F 4 HOH A 31 331 51 HOH HOH . F 4 HOH A 32 332 48 HOH HOH . F 4 HOH A 33 333 97 HOH HOH . F 4 HOH A 34 334 36 HOH HOH . F 4 HOH A 35 335 46 HOH HOH . F 4 HOH A 36 336 16 HOH HOH . F 4 HOH A 37 337 103 HOH HOH . F 4 HOH A 38 338 6 HOH HOH . F 4 HOH A 39 339 64 HOH HOH . F 4 HOH A 40 340 72 HOH HOH . F 4 HOH A 41 341 107 HOH HOH . F 4 HOH A 42 342 96 HOH HOH . F 4 HOH A 43 343 58 HOH HOH . F 4 HOH A 44 344 68 HOH HOH . F 4 HOH A 45 345 65 HOH HOH . F 4 HOH A 46 346 53 HOH HOH . F 4 HOH A 47 347 23 HOH HOH . G 4 HOH B 1 301 26 HOH HOH . G 4 HOH B 2 302 4 HOH HOH . G 4 HOH B 3 303 69 HOH HOH . G 4 HOH B 4 304 38 HOH HOH . G 4 HOH B 5 305 90 HOH HOH . G 4 HOH B 6 306 104 HOH HOH . G 4 HOH B 7 307 20 HOH HOH . G 4 HOH B 8 308 32 HOH HOH . G 4 HOH B 9 309 1 HOH HOH . G 4 HOH B 10 310 81 HOH HOH . G 4 HOH B 11 311 12 HOH HOH . G 4 HOH B 12 312 18 HOH HOH . G 4 HOH B 13 313 52 HOH HOH . G 4 HOH B 14 314 37 HOH HOH . G 4 HOH B 15 315 11 HOH HOH . G 4 HOH B 16 316 9 HOH HOH . G 4 HOH B 17 317 93 HOH HOH . G 4 HOH B 18 318 50 HOH HOH . G 4 HOH B 19 319 95 HOH HOH . G 4 HOH B 20 320 10 HOH HOH . G 4 HOH B 21 321 88 HOH HOH . G 4 HOH B 22 322 21 HOH HOH . G 4 HOH B 23 323 15 HOH HOH . G 4 HOH B 24 324 25 HOH HOH . G 4 HOH B 25 325 63 HOH HOH . G 4 HOH B 26 326 60 HOH HOH . G 4 HOH B 27 327 31 HOH HOH . G 4 HOH B 28 328 47 HOH HOH . G 4 HOH B 29 329 7 HOH HOH . G 4 HOH B 30 330 55 HOH HOH . G 4 HOH B 31 331 14 HOH HOH . G 4 HOH B 32 332 71 HOH HOH . G 4 HOH B 33 333 92 HOH HOH . G 4 HOH B 34 334 106 HOH HOH . G 4 HOH B 35 335 98 HOH HOH . G 4 HOH B 36 336 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VDY . . . C 2 5.719 0.072 -1.464 1 48 ? O1 VDY 201 A 1 HETATM 2 O O2 VDY . . . C 2 0.439 2.553 -15.738 1 40.52 ? O2 VDY 201 A 1 HETATM 3 C C1 VDY . . . C 2 3.262 1.235 -1.841 1 48.42 ? C1 VDY 201 A 1 HETATM 4 C C2 VDY . . . C 2 3.513 0.151 -0.813 1 43.85 ? C2 VDY 201 A 1 HETATM 5 C C3 VDY . . . C 2 4.632 -0.739 -1.259 1 46.05 ? C3 VDY 201 A 1 HETATM 6 C C4 VDY . . . C 2 4.284 -1.38 -2.573 1 43.85 ? C4 VDY 201 A 1 HETATM 7 C C5 VDY . . . C 2 4.079 -0.321 -3.585 1 45.14 ? C5 VDY 201 A 1 HETATM 8 C C6 VDY . . . C 2 4.495 -0.515 -4.833 1 44.76 ? C6 VDY 201 A 1 HETATM 9 C C7 VDY . . . C 2 4.398 0.518 -5.845 1 45.36 ? C7 VDY 201 A 1 HETATM 10 C C8 VDY . . . C 2 4.743 0.288 -7.095 1 46.06 ? C8 VDY 201 A 1 HETATM 11 C C9 VDY . . . C 2 5.713 -0.795 -7.45 1 44.22 ? C9 VDY 201 A 1 HETATM 12 C C10 VDY . . . C 2 3.061 0.64 -3.192 1 44.98 ? C10 VDY 201 A 1 HETATM 13 C C11 VDY . . . C 2 5.307 -1.403 -8.755 1 40.74 ? C11 VDY 201 A 1 HETATM 14 C C12 VDY . . . C 2 5.1 -0.365 -9.852 1 44.83 ? C12 VDY 201 A 1 HETATM 15 C C13 VDY . . . C 2 4.104 0.662 -9.44 1 39.73 ? C13 VDY 201 A 1 HETATM 16 C C14 VDY . . . C 2 4.647 1.323 -8.158 1 42.49 ? C14 VDY 201 A 1 HETATM 17 C C15 VDY . . . C 2 3.631 2.415 -7.916 1 42.04 ? C15 VDY 201 A 1 HETATM 18 C C16 VDY . . . C 2 3.342 2.908 -9.33 1 40.5 ? C16 VDY 201 A 1 HETATM 19 C C17 VDY . . . C 2 3.907 1.875 -10.312 1 38.44 ? C17 VDY 201 A 1 HETATM 20 C C18 VDY . . . C 2 2.793 -0.011 -9.154 1 40.78 ? C18 VDY 201 A 1 HETATM 21 C C19 VDY . . . C 2 2.107 1.064 -3.969 1 44.09 ? C19 VDY 201 A 1 HETATM 22 C C20 VDY . . . C 2 2.913 1.738 -11.467 1 37.96 ? C20 VDY 201 A 1 HETATM 23 C C21 VDY . . . C 2 3.358 0.655 -12.413 1 36.95 ? C21 VDY 201 A 1 HETATM 24 C C22 VDY . . . C 2 2.829 3.063 -12.206 1 35.29 ? C22 VDY 201 A 1 HETATM 25 C C23 VDY . . . C 2 2.099 3.041 -13.535 1 39.13 ? C23 VDY 201 A 1 HETATM 26 C C24 VDY . . . C 2 0.61 3.102 -13.361 1 40.44 ? C24 VDY 201 A 1 HETATM 27 C C25 VDY . . . C 2 -0.164 3.208 -14.665 1 39.74 ? C25 VDY 201 A 1 HETATM 28 C C26 VDY . . . C 2 -1.486 2.517 -14.472 1 42.16 ? C26 VDY 201 A 1 HETATM 29 C C27 VDY . . . C 2 -0.401 4.67 -15.017 1 37.95 ? C27 VDY 201 A 1 HETATM 30 H HO1 VDY . . . C 2 6.416 -0.495 -1.801 1 57.6 ? HO1 VDY 201 A 1 HETATM 31 H HO2 VDY . . . C 2 0.527 1.625 -15.507 1 48.62 ? HO2 VDY 201 A 1 HETATM 32 H H11 VDY . . . C 2 4.122 1.896 -1.878 1 58.1 ? H11 VDY 201 A 1 HETATM 33 H H12 VDY . . . C 2 2.377 1.792 -1.565 1 58.1 ? H12 VDY 201 A 1 HETATM 34 H H21 VDY . . . C 2 2.617 -0.446 -0.681 1 52.62 ? H21 VDY 201 A 1 HETATM 35 H H22 VDY . . . C 2 3.789 0.608 0.129 1 52.62 ? H22 VDY 201 A 1 HETATM 36 H H31 VDY . . . C 2 4.849 -1.489 -0.509 1 55.26 ? H31 VDY 201 A 1 HETATM 37 H H41 VDY . . . C 2 3.37 -1.953 -2.467 1 52.62 ? H41 VDY 201 A 1 HETATM 38 H H42 VDY . . . C 2 5.095 -2.026 -2.886 1 52.62 ? H42 VDY 201 A 1 HETATM 39 H H61 VDY . . . C 2 4.929 -1.462 -5.089 1 53.71 ? H61 VDY 201 A 1 HETATM 40 H H71 VDY . . . C 2 4.04 1.493 -5.573 1 54.43 ? H71 VDY 201 A 1 HETATM 41 H H91 VDY . . . C 2 6.706 -0.372 -7.549 1 53.06 ? H91 VDY 201 A 1 HETATM 42 H H92 VDY . . . C 2 5.712 -1.554 -6.677 1 53.06 ? H92 VDY 201 A 1 HETATM 43 H H111 VDY . . . C 2 6.085 -2.09 -9.065 1 48.88 ? H111 VDY 201 A 1 HETATM 44 H H112 VDY . . . C 2 4.385 -1.953 -8.606 1 48.88 ? H112 VDY 201 A 1 HETATM 45 H H121 VDY . . . C 2 6.042 0.132 -10.051 1 53.79 ? H121 VDY 201 A 1 HETATM 46 H H122 VDY . . . C 2 4.753 -0.855 -10.755 1 53.79 ? H122 VDY 201 A 1 HETATM 47 H H141 VDY . . . C 2 5.62 1.752 -8.354 1 50.99 ? H141 VDY 201 A 1 HETATM 48 H H151 VDY . . . C 2 4.053 3.215 -7.314 1 50.45 ? H151 VDY 201 A 1 HETATM 49 H H152 VDY . . . C 2 2.733 2.011 -7.464 1 50.45 ? H152 VDY 201 A 1 HETATM 50 H H161 VDY . . . C 2 3.829 3.867 -9.484 1 48.6 ? H161 VDY 201 A 1 HETATM 51 H H162 VDY . . . C 2 2.272 3.007 -9.474 1 48.6 ? H162 VDY 201 A 1 HETATM 52 H H171 VDY . . . C 2 4.867 2.208 -10.687 1 46.13 ? H171 VDY 201 A 1 HETATM 53 H H181 VDY . . . C 2 2.954 -0.803 -8.433 1 48.94 ? H181 VDY 201 A 1 HETATM 54 H H182 VDY . . . C 2 2.098 0.715 -8.747 1 48.94 ? H182 VDY 201 A 1 HETATM 55 H H183 VDY . . . C 2 2.393 -0.426 -10.072 1 48.94 ? H183 VDY 201 A 1 HETATM 56 H H191 VDY . . . C 2 2.129 0.799 -5.006 1 52.91 ? H191 VDY 201 A 1 HETATM 57 H H192 VDY . . . C 2 1.5 1.891 -3.646 1 52.91 ? H192 VDY 201 A 1 HETATM 58 H H201 VDY . . . C 2 1.938 1.489 -11.07 1 45.55 ? H201 VDY 201 A 1 HETATM 59 H H211 VDY . . . C 2 3.498 1.055 -13.408 1 44.35 ? H211 VDY 201 A 1 HETATM 60 H H212 VDY . . . C 2 4.295 0.235 -12.069 1 44.35 ? H212 VDY 201 A 1 HETATM 61 H H213 VDY . . . C 2 2.602 -0.123 -12.437 1 44.35 ? H213 VDY 201 A 1 HETATM 62 H H221 VDY . . . C 2 2.327 3.773 -11.561 1 42.35 ? H221 VDY 201 A 1 HETATM 63 H H222 VDY . . . C 2 3.839 3.412 -12.383 1 42.35 ? H222 VDY 201 A 1 HETATM 64 H H231 VDY . . . C 2 2.404 3.898 -14.124 1 46.96 ? H231 VDY 201 A 1 HETATM 65 H H232 VDY . . . C 2 2.36 2.135 -14.07 1 46.96 ? H232 VDY 201 A 1 HETATM 66 H H241 VDY . . . C 2 0.294 2.205 -12.84 1 48.53 ? H241 VDY 201 A 1 HETATM 67 H H242 VDY . . . C 2 0.369 3.964 -12.751 1 48.53 ? H242 VDY 201 A 1 HETATM 68 H H261 VDY . . . C 2 -2.261 3.088 -14.97 1 50.59 ? H261 VDY 201 A 1 HETATM 69 H H262 VDY . . . C 2 -1.428 1.528 -14.912 1 50.59 ? H262 VDY 201 A 1 HETATM 70 H H263 VDY . . . C 2 -1.727 2.433 -13.417 1 50.59 ? H263 VDY 201 A 1 HETATM 71 H H271 VDY . . . C 2 -1.446 4.83 -15.26 1 45.54 ? H271 VDY 201 A 1 HETATM 72 H H272 VDY . . . C 2 -0.127 5.295 -14.174 1 45.54 ? H272 VDY 201 A 1 HETATM 73 H H273 VDY . . . C 2 0.21 4.94 -15.87 1 45.54 ? H273 VDY 201 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 73 #