data_5IEN # _model_server_result.job_id IyGnjn60lHK036WmzXwx-g _model_server_result.datetime_utc '2024-12-24 01:36:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ien # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5IEN # _exptl.entry_id 5IEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.637 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IEN _cell.length_a 48.831 _cell.length_b 60.415 _cell.length_c 93.942 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H44 O2' _chem_comp.formula_weight 400.637 _chem_comp.id VDY _chem_comp.mon_nstd_flag . _chem_comp.name 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '25-HYDROXYVITAMIN D3' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 VDY sing 376 n n O1 HO1 VDY sing 377 n n O2 C25 VDY sing 378 n n O2 HO2 VDY sing 379 n n C1 C2 VDY sing 380 n n C1 C10 VDY sing 381 n n C1 H11 VDY sing 382 n n C1 H12 VDY sing 383 n n C2 C3 VDY sing 384 n n C2 H21 VDY sing 385 n n C2 H22 VDY sing 386 n n C3 C4 VDY sing 387 n n C3 H31 VDY sing 388 n n C4 C5 VDY sing 389 n n C4 H41 VDY sing 390 n n C4 H42 VDY sing 391 n n C5 C6 VDY doub 392 z n C5 C10 VDY sing 393 n n C6 C7 VDY sing 394 n n C6 H61 VDY sing 395 n n C7 C8 VDY doub 396 e n C7 H71 VDY sing 397 n n C8 C9 VDY sing 398 n n C8 C14 VDY sing 399 n n C9 C11 VDY sing 400 n n C9 H91 VDY sing 401 n n C9 H92 VDY sing 402 n n C10 C19 VDY doub 403 n n C11 C12 VDY sing 404 n n C11 H111 VDY sing 405 n n C11 H112 VDY sing 406 n n C12 C13 VDY sing 407 n n C12 H121 VDY sing 408 n n C12 H122 VDY sing 409 n n C13 C14 VDY sing 410 n n C13 C17 VDY sing 411 n n C13 C18 VDY sing 412 n n C14 C15 VDY sing 413 n n C14 H141 VDY sing 414 n n C15 C16 VDY sing 415 n n C15 H151 VDY sing 416 n n C15 H152 VDY sing 417 n n C16 C17 VDY sing 418 n n C16 H161 VDY sing 419 n n C16 H162 VDY sing 420 n n C17 C20 VDY sing 421 n n C17 H171 VDY sing 422 n n C18 H181 VDY sing 423 n n C18 H182 VDY sing 424 n n C18 H183 VDY sing 425 n n C19 H191 VDY sing 426 n n C19 H192 VDY sing 427 n n C20 C21 VDY sing 428 n n C20 C22 VDY sing 429 n n C20 H201 VDY sing 430 n n C21 H211 VDY sing 431 n n C21 H212 VDY sing 432 n n C21 H213 VDY sing 433 n n C22 C23 VDY sing 434 n n C22 H221 VDY sing 435 n n C22 H222 VDY sing 436 n n C23 C24 VDY sing 437 n n C23 H231 VDY sing 438 n n C23 H232 VDY sing 439 n n C24 C25 VDY sing 440 n n C24 H241 VDY sing 441 n n C24 H242 VDY sing 442 n n C25 C26 VDY sing 443 n n C25 C27 VDY sing 444 n n C26 H261 VDY sing 445 n n C26 H262 VDY sing 446 n n C26 H263 VDY sing 447 n n C27 H271 VDY sing 448 n n C27 H272 VDY sing 449 n n C27 H273 VDY sing 450 n n # _atom_sites.entry_id 5IEN _atom_sites.fract_transf_matrix[1][1] 0.020479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VDY A 1 201 1 VDY VDY . D 3 GOL A 1 202 1 GOL GOL . E 2 VDY B 1 201 2 VDY VDY . F 4 HOH A 1 301 22 HOH HOH . F 4 HOH A 2 302 13 HOH HOH . F 4 HOH A 3 303 57 HOH HOH . F 4 HOH A 4 304 28 HOH HOH . F 4 HOH A 5 305 19 HOH HOH . F 4 HOH A 6 306 40 HOH HOH . F 4 HOH A 7 307 76 HOH HOH . F 4 HOH A 8 308 24 HOH HOH . F 4 HOH A 9 309 27 HOH HOH . F 4 HOH A 10 310 74 HOH HOH . F 4 HOH A 11 311 2 HOH HOH . F 4 HOH A 12 312 49 HOH HOH . F 4 HOH A 13 313 17 HOH HOH . F 4 HOH A 14 314 56 HOH HOH . F 4 HOH A 15 315 34 HOH HOH . F 4 HOH A 16 316 80 HOH HOH . F 4 HOH A 17 317 54 HOH HOH . F 4 HOH A 18 318 41 HOH HOH . F 4 HOH A 19 319 84 HOH HOH . F 4 HOH A 20 320 39 HOH HOH . F 4 HOH A 21 321 70 HOH HOH . F 4 HOH A 22 322 3 HOH HOH . F 4 HOH A 23 323 29 HOH HOH . F 4 HOH A 24 324 35 HOH HOH . F 4 HOH A 25 325 33 HOH HOH . F 4 HOH A 26 326 83 HOH HOH . F 4 HOH A 27 327 8 HOH HOH . F 4 HOH A 28 328 61 HOH HOH . F 4 HOH A 29 329 5 HOH HOH . F 4 HOH A 30 330 79 HOH HOH . F 4 HOH A 31 331 51 HOH HOH . F 4 HOH A 32 332 48 HOH HOH . F 4 HOH A 33 333 97 HOH HOH . F 4 HOH A 34 334 36 HOH HOH . F 4 HOH A 35 335 46 HOH HOH . F 4 HOH A 36 336 16 HOH HOH . F 4 HOH A 37 337 103 HOH HOH . F 4 HOH A 38 338 6 HOH HOH . F 4 HOH A 39 339 64 HOH HOH . F 4 HOH A 40 340 72 HOH HOH . F 4 HOH A 41 341 107 HOH HOH . F 4 HOH A 42 342 96 HOH HOH . F 4 HOH A 43 343 58 HOH HOH . F 4 HOH A 44 344 68 HOH HOH . F 4 HOH A 45 345 65 HOH HOH . F 4 HOH A 46 346 53 HOH HOH . F 4 HOH A 47 347 23 HOH HOH . G 4 HOH B 1 301 26 HOH HOH . G 4 HOH B 2 302 4 HOH HOH . G 4 HOH B 3 303 69 HOH HOH . G 4 HOH B 4 304 38 HOH HOH . G 4 HOH B 5 305 90 HOH HOH . G 4 HOH B 6 306 104 HOH HOH . G 4 HOH B 7 307 20 HOH HOH . G 4 HOH B 8 308 32 HOH HOH . G 4 HOH B 9 309 1 HOH HOH . G 4 HOH B 10 310 81 HOH HOH . G 4 HOH B 11 311 12 HOH HOH . G 4 HOH B 12 312 18 HOH HOH . G 4 HOH B 13 313 52 HOH HOH . G 4 HOH B 14 314 37 HOH HOH . G 4 HOH B 15 315 11 HOH HOH . G 4 HOH B 16 316 9 HOH HOH . G 4 HOH B 17 317 93 HOH HOH . G 4 HOH B 18 318 50 HOH HOH . G 4 HOH B 19 319 95 HOH HOH . G 4 HOH B 20 320 10 HOH HOH . G 4 HOH B 21 321 88 HOH HOH . G 4 HOH B 22 322 21 HOH HOH . G 4 HOH B 23 323 15 HOH HOH . G 4 HOH B 24 324 25 HOH HOH . G 4 HOH B 25 325 63 HOH HOH . G 4 HOH B 26 326 60 HOH HOH . G 4 HOH B 27 327 31 HOH HOH . G 4 HOH B 28 328 47 HOH HOH . G 4 HOH B 29 329 7 HOH HOH . G 4 HOH B 30 330 55 HOH HOH . G 4 HOH B 31 331 14 HOH HOH . G 4 HOH B 32 332 71 HOH HOH . G 4 HOH B 33 333 92 HOH HOH . G 4 HOH B 34 334 106 HOH HOH . G 4 HOH B 35 335 98 HOH HOH . G 4 HOH B 36 336 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VDY . . . E 2 16.491 3.166 -39.789 1 53.79 ? O1 VDY 201 B 1 HETATM 2 O O2 VDY . . . E 2 17.674 10.522 -25.767 1 36.5 ? O2 VDY 201 B 1 HETATM 3 C C1 VDY . . . E 2 16.832 6.046 -39.637 1 49.62 ? C1 VDY 201 B 1 HETATM 4 C C2 VDY . . . E 2 17.518 5.146 -40.64 1 49.46 ? C2 VDY 201 B 1 HETATM 5 C C3 VDY . . . E 2 17.732 3.764 -40.065 1 47.23 ? C3 VDY 201 B 1 HETATM 6 C C4 VDY . . . E 2 18.539 3.848 -38.786 1 48.36 ? C4 VDY 201 B 1 HETATM 7 C C5 VDY . . . E 2 17.836 4.756 -37.837 1 41.1 ? C5 VDY 201 B 1 HETATM 8 C C6 VDY . . . E 2 17.805 4.512 -36.536 1 47.05 ? C6 VDY 201 B 1 HETATM 9 C C7 VDY . . . E 2 16.819 5.123 -35.676 1 40.21 ? C7 VDY 201 B 1 HETATM 10 C C8 VDY . . . E 2 16.838 4.837 -34.399 1 37.8 ? C8 VDY 201 B 1 HETATM 11 C C9 VDY . . . E 2 17.085 3.449 -33.927 1 36.38 ? C9 VDY 201 B 1 HETATM 12 C C10 VDY . . . E 2 17.636 6.069 -38.393 1 43.42 ? C10 VDY 201 B 1 HETATM 13 C C11 VDY . . . E 2 17.919 3.512 -32.684 1 35.39 ? C11 VDY 201 B 1 HETATM 14 C C12 VDY . . . E 2 17.438 4.495 -31.628 1 36.8 ? C12 VDY 201 B 1 HETATM 15 C C13 VDY . . . E 2 17.079 5.818 -32.191 1 36.87 ? C13 VDY 201 B 1 HETATM 16 C C14 VDY . . . E 2 16.115 5.612 -33.374 1 35.44 ? C14 VDY 201 B 1 HETATM 17 C C15 VDY . . . E 2 15.771 7.027 -33.744 1 37.3 ? C15 VDY 201 B 1 HETATM 18 C C16 VDY . . . E 2 15.722 7.748 -32.388 1 36.09 ? C16 VDY 201 B 1 HETATM 19 C C17 VDY . . . E 2 16.247 6.761 -31.355 1 39.11 ? C17 VDY 201 B 1 HETATM 20 C C18 VDY . . . E 2 18.342 6.504 -32.634 1 38.56 ? C18 VDY 201 B 1 HETATM 21 C C19 VDY . . . E 2 17.801 7.161 -37.712 1 44.77 ? C19 VDY 201 B 1 HETATM 22 C C20 VDY . . . E 2 17.043 7.496 -30.295 1 35.38 ? C20 VDY 201 B 1 HETATM 23 C C21 VDY . . . E 2 17.528 6.481 -29.298 1 35.79 ? C21 VDY 201 B 1 HETATM 24 C C22 VDY . . . E 2 16.213 8.49 -29.535 1 35.33 ? C22 VDY 201 B 1 HETATM 25 C C23 VDY . . . E 2 17.172 9.467 -28.906 1 38.79 ? C23 VDY 201 B 1 HETATM 26 C C24 VDY . . . E 2 16.488 10.234 -27.805 1 35.54 ? C24 VDY 201 B 1 HETATM 27 C C25 VDY . . . E 2 17.397 11.131 -26.968 1 34.43 ? C25 VDY 201 B 1 HETATM 28 C C26 VDY . . . E 2 18.734 11.445 -27.575 1 36.74 ? C26 VDY 201 B 1 HETATM 29 C C27 VDY . . . E 2 16.663 12.411 -26.652 1 33.99 ? C27 VDY 201 B 1 HETATM 30 H HO1 VDY . . . E 2 16.676 2.362 -39.29 1 64.55 ? HO1 VDY 201 B 1 HETATM 31 H HO2 VDY . . . E 2 18.145 9.712 -25.972 1 43.8 ? HO2 VDY 201 B 1 HETATM 32 H H11 VDY . . . E 2 15.849 5.645 -39.419 1 59.54 ? H11 VDY 201 B 1 HETATM 33 H H12 VDY . . . E 2 16.75 7.05 -40.035 1 59.54 ? H12 VDY 201 B 1 HETATM 34 H H21 VDY . . . E 2 18.478 5.581 -40.901 1 59.36 ? H21 VDY 201 B 1 HETATM 35 H H22 VDY . . . E 2 16.901 5.065 -41.527 1 59.36 ? H22 VDY 201 B 1 HETATM 36 H H31 VDY . . . E 2 18.27 3.157 -40.782 1 56.67 ? H31 VDY 201 B 1 HETATM 37 H H41 VDY . . . E 2 19.52 4.253 -39.006 1 58.03 ? H41 VDY 201 B 1 HETATM 38 H H42 VDY . . . E 2 18.634 2.859 -38.352 1 58.03 ? H42 VDY 201 B 1 HETATM 39 H H61 VDY . . . E 2 18.611 3.956 -36.093 1 56.46 ? H61 VDY 201 B 1 HETATM 40 H H71 VDY . . . E 2 16.272 5.978 -36.024 1 48.25 ? H71 VDY 201 B 1 HETATM 41 H H91 VDY . . . E 2 16.144 2.958 -33.714 1 43.65 ? H91 VDY 201 B 1 HETATM 42 H H92 VDY . . . E 2 17.618 2.898 -34.693 1 43.65 ? H92 VDY 201 B 1 HETATM 43 H H111 VDY . . . E 2 17.934 2.519 -32.25 1 42.47 ? H111 VDY 201 B 1 HETATM 44 H H112 VDY . . . E 2 18.932 3.782 -32.962 1 42.47 ? H112 VDY 201 B 1 HETATM 45 H H121 VDY . . . E 2 16.567 4.083 -31.136 1 44.16 ? H121 VDY 201 B 1 HETATM 46 H H122 VDY . . . E 2 18.23 4.637 -30.903 1 44.16 ? H122 VDY 201 B 1 HETATM 47 H H141 VDY . . . E 2 15.232 5.08 -33.049 1 42.53 ? H141 VDY 201 B 1 HETATM 48 H H151 VDY . . . E 2 14.804 7.068 -34.233 1 44.76 ? H151 VDY 201 B 1 HETATM 49 H H152 VDY . . . E 2 16.549 7.448 -34.37 1 44.76 ? H152 VDY 201 B 1 HETATM 50 H H161 VDY . . . E 2 14.7 8.016 -32.149 1 43.31 ? H161 VDY 201 B 1 HETATM 51 H H162 VDY . . . E 2 16.354 8.629 -32.41 1 43.31 ? H162 VDY 201 B 1 HETATM 52 H H171 VDY . . . E 2 15.42 6.225 -30.903 1 46.94 ? H171 VDY 201 B 1 HETATM 53 H H181 VDY . . . E 2 18.781 5.961 -33.46 1 46.27 ? H181 VDY 201 B 1 HETATM 54 H H182 VDY . . . E 2 18.112 7.516 -32.947 1 46.27 ? H182 VDY 201 B 1 HETATM 55 H H183 VDY . . . E 2 19.043 6.533 -31.809 1 46.27 ? H183 VDY 201 B 1 HETATM 56 H H191 VDY . . . E 2 18.313 7.122 -36.768 1 53.72 ? H191 VDY 201 B 1 HETATM 57 H H192 VDY . . . E 2 17.674 8.106 -38.207 1 53.72 ? H192 VDY 201 B 1 HETATM 58 H H201 VDY . . . E 2 17.885 7.998 -30.75 1 42.45 ? H201 VDY 201 B 1 HETATM 59 H H211 VDY . . . E 2 17.689 6.965 -28.343 1 42.95 ? H211 VDY 201 B 1 HETATM 60 H H212 VDY . . . E 2 16.782 5.701 -29.187 1 42.95 ? H212 VDY 201 B 1 HETATM 61 H H213 VDY . . . E 2 18.458 6.048 -29.648 1 42.95 ? H213 VDY 201 B 1 HETATM 62 H H221 VDY . . . E 2 15.536 9.004 -30.204 1 42.39 ? H221 VDY 201 B 1 HETATM 63 H H222 VDY . . . E 2 15.653 7.977 -28.762 1 42.39 ? H222 VDY 201 B 1 HETATM 64 H H231 VDY . . . E 2 18.016 8.927 -28.496 1 46.55 ? H231 VDY 201 B 1 HETATM 65 H H232 VDY . . . E 2 17.526 10.158 -29.661 1 46.55 ? H232 VDY 201 B 1 HETATM 66 H H241 VDY . . . E 2 15.716 10.845 -28.256 1 42.64 ? H241 VDY 201 B 1 HETATM 67 H H242 VDY . . . E 2 16.011 9.522 -27.144 1 42.64 ? H242 VDY 201 B 1 HETATM 68 H H261 VDY . . . E 2 19.397 11.799 -26.796 1 44.09 ? H261 VDY 201 B 1 HETATM 69 H H262 VDY . . . E 2 19.158 10.551 -28.015 1 44.09 ? H262 VDY 201 B 1 HETATM 70 H H263 VDY . . . E 2 18.621 12.207 -28.335 1 44.09 ? H263 VDY 201 B 1 HETATM 71 H H271 VDY . . . E 2 16.997 12.793 -25.697 1 40.79 ? H271 VDY 201 B 1 HETATM 72 H H272 VDY . . . E 2 16.86 13.147 -27.424 1 40.79 ? H272 VDY 201 B 1 HETATM 73 H H273 VDY . . . E 2 15.597 12.213 -26.61 1 40.79 ? H273 VDY 201 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 73 #